stx12 (stx12,LOC107700764,LOC107712603,LOC107689533)


Basic Information

Item Value
gene id stx12
gene name stx12,LOC107700764,LOC107712603,LOC107689533
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3583094 ~ 3590653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218000.1
CCGAGTGAGGAACGGCCCTGAGCTGAAGTAAGATCATTATATGTATTCACCGGAATTAGCAAAACAACTCTCTGACAgcacatCGTTTTCAGGCACGGATACGCTTCCTGCTCTAGTTTCCTCCACCCTTTGTCCCGAGACGCCCGTCGGAGCCAGCTGAACAGCCCGCAGTCATGTCGTACGGACGGACCGAGCAGCGCGCCTCGCCAAAGGACTTCAGCAGCCTGATCCAGACATGCAGCTCCAACATCCAAAAGATCACGCAGAACAcGGCACAAATCAAGAGCTTGGTAAACCAACTGGGAACAAAACAAGACACCAGCGACCTGAGGGAGAGACTTCAGCAGGTGCAGCACTACACAAACCAGCTGGCCAAGGAGACCAACAAACACCTGAAAGACCTgggctcgctctctctccccGCCTCCCTGTCCGAACAGAGACAGCAGAAGATCCAGAAGGACCGGCTGATGAACGATTTCTCCGCCGCTCTCAACAACTTCCAGGCAGTGCAGCGCCGAGCcgcagagaaagagaaggagtcTGTGGCCAGAGCCCGAGCAGGGTCTCGACTCTCGGCTGAAGATGGAGGTCATGAAGAGCAGCTGGTCTCCTTTGATAAtaatgatgatTGGGGTAAGACCACCACTCAGATAGAAGACGTGGCCATAACAGAGGAGGACCTGGAGCTcattaaagaaagagaaaccGCCATTCGACAACTTGAGTCAGACATTTTGGATGTGAATCAGATTTTCAAGGATCTTGCGGTGATGATCCACGATCAGGGTGAAATGATAGATAGCATAGAGGCTAATGTGGAGAGTGCAGAGGTGCATGTGGAAAGAGGAGCTGAGCAGCTCCAGAGAGCAGCTCACTATCAGCAAAAGTCTCGTAAGAAGATGTGCATCCTGGCGGTGGTCCTTGCCTTATTGGTCGGCGTTATCGGCCTTATCATCTGGGCGTCGACAAAGTGAAGATCCTTCCTCTACTCTTCCCCTTTTCCTctcatttctttaatttattttctcgCTCGCAAACCCAGTGCCATCCTCATGGAAAGGGAGGTCCTCAAAGGCTCTCAGCAGCACCTGTAGGTCCGTCTCTGTAGTTTCTGCAGGGTTAGATACAGTATGAAGTGGCTTAAGCGAATGTAACATTCCCTAGACTCTCCCCTCCGGACCTTTAGTTCCTAATGAAGGAGGATGAGCTCATGGATGGGGTGGGGAAAAGTGATATAAGATTTCATTTTGATGCTTGTGATATATTTCTAGCACTAACACTACtttacatttcttaataaaGTCAGGTTATTTCATTGAATTGCAATAAGATGTAAAAATTCAATTTTGATgacattttgttctctttttacATCTTACTGTAATGTAAATTTGGCTTTAGACGTTTTGTACATTGTACATTTCAACTGTTTCAGATTTGTCAAGTCACTCCAAAGGTTAACAGCAAACTGCTTAGATGAGCTGCAGAATTAACCGTGCGTTAGACACCATGTCATTGATACCGTAAACCAGTAGACTAGTAGAACTGCAAATATGAAGCAGCAATGATACCTAAAGCTCAAACATTTCTCAACTTGAGTTTCAATACTGTTACTGGTGTTAACTGACAGGTTTATTATACAGGTCTATTATATGGTGGTCATATAGCTGTAAATGTGTTGTATAAGAACTCGTAATCAATACTATGGCTGAAATCGATTTGTATATTACAACATTAAAAGTCTGCACAGTACgttaaaatgatgtaaaaagaTTTGCACCCATACTTTTAGAACATGCAAAAATTATtgtccttttttcctttttaaaaattgatttatatGACTTCTATGAGTACGTGAGTAAAGAAATGTGTCTTAATCGA
>XM_043218001.1
TGCTCTCGAAGGCTCTGCCCCTTAGCGGAAGTAAAAAGTGCACCAGACCGGAAGTCCCGAGTGAGGAACGGCCCTGAGCTGAACGTTTTCAGGCACGGATACGCTTCCTGCTCTAGTTTCCTCCACCCTTTGTCCCGAGACGCCCGTCGGAGCCAGCTGAACAGCCCGCAGTCATGTCGTACGGACGGACCGAGCAGCGCGCCTCGCCAAAGGACTTCAGCAGCCTGATCCAGACATGCAGCTCCAACATCCAAAAGATCACGCAGAACAcGGCACAAATCAAGAGCTTGGTAAACCAACTGGGAACAAAACAAGACACCAGCGACCTGAGGGAGAGACTTCAGCAGGTGCAGCACTACACAAACCAGCTGGCCAAGGAGACCAACAAACACCTGAAAGACCTgggctcgctctctctccccGCCTCCCTGTCCGAACAGAGACAGCAGAAGATCCAGAAGGACCGGCTGATGAACGATTTCTCCGCCGCTCTCAACAACTTCCAGGCAGTGCAGCGCCGAGCcgcagagaaagagaaggagtcTGTGGCCAGAGCCCGAGCAGGGTCTCGACTCTCGGCTGAAGATGGAGGTCATGAAGAGCAGCTGGTCTCCTTTGATAAtaatgatgatTGGGGTAAGACCACCACTCAGATAGAAGACGTGGCCATAACAGAGGAGGACCTGGAGCTcattaaagaaagagaaaccGCCATTCGACAACTTGAGTCAGACATTTTGGATGTGAATCAGATTTTCAAGGATCTTGCGGTGATGATCCACGATCAGGGTGAAATGATAGATAGCATAGAGGCTAATGTGGAGAGTGCAGAGGTGCATGTGGAAAGAGGAGCTGAGCAGCTCCAGAGAGCAGCTCACTATCAGCAAAAGTCTCGTAAGAAGATGTGCATCCTGGCGGTGGTCCTTGCCTTATTGGTCGGCGTTATCGGCCTTATCATCTGGGCGTCGACAAAGTGAAGATCCTTCCTCTACTCTTCCCCTTTTCCTctcatttctttaatttattttctcgCTCGCAAACCCAGTGCCATCCTCATGGAAAGGGAGGTCCTCAAAGGCTCTCAGCAGCACCTGTAGGTCCGTCTCTGTAGTTTCTGCAGGGTTAGATACAGTATGAAGTGGCTTAAGCGAATGTAACATTCCCTAGACTCTCCCCTCCGGACCTTTAGTTCCTAATGAAGGAGGATGAGCTCATGGATGGGGTGGGGAAAAGTGATATAAGATTTCATTTTGATGCTTGTGATATATTTCTAGCACTAACACTACtttacatttcttaataaaGTCAGGTTATTTCATTGAATTGCAATAAGATGTAAAAATTCAATTTTGATgacattttgttctctttttacATCTTACTGTAATGTAAATTTGGCTTTAGACGTTTTGTACATTGTACATTTCAACTGTTTCAGATTTGTCAAGTCACTCCAAAGGTTAACAGCAAACTGCTTAGATGAGCTGCAGAATTAACCGTGCGTTAGACACCATGTCATTGATACCGTAAACCAGTAGACTAGTAGAACTGCAAATATGAAGCAGCAATGATACCTAAAGCTCAAACATTTCTCAACTTGAGTTTCAATACTGTTACTGGTGTTAACTGACAGGTTTATTATACAGGTCTATTATATGGTGGTCATATAGCTGTAAATGTGTTGTATAAGAACTCGTAATCAATACTATGGCTGAAATCGATTTGTATATTACAACATTAAAAGTCTGCACAGTACgttaaaatgatgtaaaaagaTTTGCACCCATACTTTTAGAACATGCAAAAATTATtgtccttttttcctttttaaaaattgatttatatGACTTCTATGAGTACGTGAGTAAAGAAATGTGTCTTAATCGA

Function

symbol description
stx12 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

NR:

description
syntaxin-12-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K13813 STX12, STX13; syntaxin 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218000.1 False 1887 mRNA 0.45 10 3583150 3590653
XM_043218001.1 True 1887 mRNA 0.45 10 3583094 3590653

Neighbor

gene id symbol gene type direction distance location
trnau1apa LOC107754918,LOC107689564,LOC107567591 coding upstream 704 3577978 ~ 3582390 (+)
paqr7a LOC107567589,LOC107754930,LOC107689535 coding upstream 12110 3567014 ~ 3570984 (+)
nr0b2b NA coding upstream 74383 3504109 ~ 3508711 (+)
tbxta ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085 coding upstream 91870 3486502 ~ 3491224 (+)
LOC122323611 NA coding upstream 419452 3150077 ~ 3163642 (+)
ccn2b LOC107550649,LOC107700780,LOC107712605,LOC107578025,LOC107754917,LOC107689532 coding downstream 26488 3617141 ~ 3622533 (+)
epb41a epb41a,epb41,LOC107689531,LOC107569307,LOC107754926 coding downstream 33122 3623775 ~ 3679373 (+)
lrp12 lrp12,LOC107754924,LOC107689529,LOC107714470,LOC107559399,LOC107668711,LOC107569303 coding downstream 249588 3840241 ~ 3852009 (+)
LOC122323814 NA coding downstream 268811 3859464 ~ 3862610 (+)
LOC122323815 NA coding downstream 272575 3863228 ~ 3891965 (+)
G130150 NA non-coding upstream 41700 3465239 ~ 3541394 (+)
G130148 NA non-coding upstream 42326 3537502 ~ 3540768 (+)
G130168 NA non-coding upstream 64696 3516460 ~ 3518398 (+)
G130138 NA non-coding upstream 84540 3496699 ~ 3498554 (+)
G130141 NA non-coding upstream 142907 3439713 ~ 3440187 (+)
G130313 LOC105892072 non-coding downstream 307408 3898061 ~ 4076098 (+)
G130315 NA non-coding downstream 339560 3930213 ~ 3935051 (+)
G130318 NA non-coding downstream 354742 3945395 ~ 3964718 (+)
G130336 NA non-coding downstream 560024 4150677 ~ 4160027 (+)
G130338 NA non-coding downstream 585615 4176268 ~ 4199257 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other upstream 6901 3572262 ~ 3576193 (+)
G130077 NA other upstream 489380 3093067 ~ 3093714 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other upstream 604678 2959593 ~ 2978416 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other upstream 689493 2889623 ~ 2893601 (+)
LOC122323290 NA other upstream 695466 2885413 ~ 2887628 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other downstream 169214 3759867 ~ 3760985 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other downstream 654115 4244768 ~ 4259085 (+)
ptpn2b ptpn2b,LOC107738314,LOC107552315,LOC107672871,LOC107748370,LOC107666587,LOC108438851 other downstream 803932 4394585 ~ 4406579 (+)
znf706 znf706,LOC107672881,LOC103394271,LOC107748367,LOC107552318,LOC107698658 other downstream 869222 4459875 ~ 4464904 (+)
pabpc1b pabpc1b,LOC107672855,LOC107698655,LOC107552320,LOC107748365,LOC107738317,LOC107550093 other downstream 893047 4483700 ~ 4493780 (+)

Expression


Co-expression Network