slc52a2 (slc52a2,LOC107656640,LOC107739551,LOC107748697,LOC107592033,LOC107697026,LOC107563698,LOC107748696,LOC107697021,LOC107656639)


Basic Information

Item Value
gene id slc52a2
gene name slc52a2,LOC107656640,LOC107739551,LOC107748697,LOC107592033,LOC107697026,LOC107563698,LOC107748696,LOC107697021,LOC107656639
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16655212 ~ 16663534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218002.1
CTCTTTGTAAGTGATTCGCTGAAGCAAAGTGGACTAGCAGTGCCTTTTTAGCCAAATAGAACGCATGGAATACGTCCAATCAAAGATTGTTCAGACGCACACGTGACTGAACAGGGAAGTCCGTGATGTAGAGTGGACGGTCCTctgttttatgaaaattattGCCTGGGTCCAAAGAAACACGCTGCACAGCATACCTGTAACTACTACAAAGAAAAGACTACTACAGCCGAATAAGTCGCGTGCCTCACCAGATGGTTTAAAAAACAAGCCAAGCCACTTTGATGTTCAACTATGGAGGACCTGCAAGACTTTGGTTCCTCTAGTGCAAGTGCTAAGACCATTTCTGCTGAGCTCAAGGATGATTTTTACTCCAAGCTTGTCGCTGACTTCCTTGGTGCTCATTACGGGGAGCTGTTGGAGCTGGACGAAAAGCCCTGGAAAATTCGCATGTTGATTCAGATTGGACTGATGAGAGAGGAGCAAGATATTTCATGGGTTGATTTAATTCAGTGGCTCCAAAAGATTGCCCCAATGTTTCAGTCGGCTGATTTTCGAAGCTTGATTGAGAGGAACACCACGACAGCTTTGAGCTTAACTGGAGGTGCCAGGCAGAAGTTTCTTGATTCAGATGTAAACTTTGAATTTGTTGGACCTATATGTGATAGTATTGGAATCGGAAGAAGAGATTTACTTGAAATGTCTGACTTTTCTGATCGTGCAAAATTAACTGCTCTCACAAATGGACTCATTCTCGAATTGACAAATTTTATTTCACGAGAGAAATTAGACCCGGTTGTCCTAGTGTCCTGGATTCGTAACTTTGAGCCTTTATTTTGTAGTGATGGCAAGATTCAAAGAGCCTATAGGCTCCTACGGTCAAGTCTTAAGAATTTCAGAATACAGTATCGCAACAATCAGAGGAGCCGAAAGAGGAGCCGCGGATTTCTGGATGAGTTTCTTCAGAGTCCGTTTGATCTTGCTCCTGAAGCTGATGCAGATGATATTGAATACAGGAGGGTGGCAATGGTCAAAGCACATCTGAGGAAGAAACGGCGTATTTCCATGCATAAACCTAACTCTTTGGTCAAGGAGGAGGATGAGTCCTTCCGTATTTCGCAGACAGATATGACTGTGAAAACTCACCCTGAACCCAAGCAAATGCCTGATTTGTTCAGTGTTAAAAACGAACAGAGATCAGAGAGCCATCAAATACCAATACGGTCACTGAAAGATGACAAAGAAGACCCAAGAACCGACACGGGCGACAATGTAACACTTCTGGATATCTCTGTGCTGTCTTGGCAAAAGATTGCAGAAATGAATGGAGGAAAGAACGAAGCTGCCAAGAAGGTTTCACTAGATCTGCTTCAAAATCACTTCTCTGCAATGCTAAAGGAAGATGCTAATCTAAGAACTCTCGATGACAAAGTCAAAGTAAGCACACATCCACTAGTGCCAGCATTGCATTTCCTGCGTTACATCTGCCAGTTCCTTTTCGAACTCATTGATGTAATTGACCAGCAAATGATATCATTTGAAAAAGATATAGTGTACACCATGGGTGAGAAACTTGGACGTGACAAGCACCCCAGGTTTCGGAGTTTTGTCAACTTCGATGAGAGTGCAGTGACCCGTTACATACACATGGCTTCGGAAATGTTATGTCCAAGCGAGGAGACCAACCCTAATTACCGCAGGCACTGGCTTGCTTTTTGTCTTGAAAGAAAAAACCCTTCCAAACTGCCTATTTATAGGTCAAATCGTATCATTAACTACTTTGAAGCAGCCGCTGGACTCATTCACCATCATGAAGATGTTGCTCTCTTTGTATCTGACCTGCAGCTCCTGAATGATGACTCGAATATTCTGTTGGAGAGTGTCAATGCTGACGCAAGTGATGAGGCTTTACAGGCATTGGTCTGTGTGGTTGCTGTTGTGTACCTTAAAGTCTTGGGACCCTTTTGGCAGCTTCTGAAGAGTGATGGAGAATATCCTCTTTTCAGTAGATATATCCTGTGCTTGTATGAAAAGCTTTTGGAATGGTCGCAAGATGCGAGTTGCCTTTTGCAACCAGAGGCCTTTGTCAATGTATTCTTACAGGTTCCAATGCAAGAGGTGACTTTTGGAGGAGTGTTCAGATTTTGCCGTGATAATGCAGAGAACCAATTCGGTACTCTGATAAAAGCTTGCTTAGAAAGGATGATGAAAGCCCTCGCAGCTGTACTAGAGGACAATCTTAAAGATTTCTTACCTGGTGGTGAACACTGCAAAGATCTGCCTTCGGATATAGCCGTTCAAATGGCaaactgcacatttttacaGCTTATGGGCGAGTACCCCTTTGGTCATGCATACCCATATGAGAAGAACAGGCCTGATAAAACTCTTGGTCGGACAGAGGGTTCAGTTTCTGAAAATGCAGAACAAGACCCTTCCTGGGAGACAGCAGATGAACCTACATCAGCAGTGGTCACAATGTCACCTGCTAAAACCACTCAAAAACGCTACTCCATCTTTGACGGAGCAAATTTCAATGCCGCCAAAAAAATGAAGGTGTCTAGACTTAAGCAAAAAGCCCAGGATCACATTTATAGGAAAATGATCATTGGAGCAGTTTCAAAATACGGTGGCCCATGTAAAAGCAAGCAAGACGTTGAACGATTGCTCACAAAACTAGAAGGTGCAAGCCATGCTCATATACGTGAAGTCATTCGCTGTGAGCTGAACTACCAGAAGAGCATCTTGGGTTCCAGAGACAAAAAGCTAACTCGTATAGGATTCTCTTTGAGTGACATGGTTTCTACACTGAAGGACGTCCTGCCAAATGAGAGGGTTATAGTTATATCACCGACTGAGAATGCACTTGGTCACGCTGAGATTCAAGAGACCCCGGCTGAAACATCATCCCTCGACCCCCAAAGTACAGACACTGGTCAACAAGATAAACAAAGGCATAGCATTGATATAAAGAGAACAAATGTTTTTGGCCCTTGTTACAGGGAGAACTTTGAGTTTCTCTGAATGTGTTTTAACctgataaaaatgttaaacatgttGCTAGCATTAGTTGTTTTCACATGTggtaaaaatctttgttttcagatgttttgttACTAACAAACTTGTTATTTTACTAGAATAGTAGACTTTAGTtaaattgttcattgttttttatttgtttttcataaaaagttgcattacaaaataaaaatgtttgtagcAAAATGCTcgtctttttattaaataaaaaatctactactactaccaatGATAATACAATAAGAATATTATAACAATCATTAGTGTACAAGTGTACACACATGAATTTCACACTTTTTAGCCAGTTACATGTGGCTTCTATAACATTTCAAAGAATCTGTAGCATCACACATTTGAGTACTGTGCTTTTAAGCAGAgtaaattttacaattaatgaaaaacttttaaaatgtttatacatatatttaacagtttttttcatatttaaaattggCCATATTCAATATACTCTATATTGCTTTGCTGTATATAAGGGAGCACTTTAttggttttaaataatttgatatcAGATGACATCGTTTAGCATGAGGAGAGCAATTTACATTGCCTATTCTATTCTTTCAAATACAGTCATAAGAAACAAGTGTACTATGTATAATGAAAAACATGGACGCTCTAACTTACTTGTGCCCTTT
>XM_043218003.1
TGAAGCAAAGTGGACTAGCAGTGCCTTTTTAGCCAAATAGAACGCATGGAATACGTCCAATCAAAGATTGTTCAGACGCACACGTGACTGAACAGGGAAGTCCGTGATGTAGAGTGGACGGTCCTctgttttatgaaaattattGCCTGGGTCCAAAGAAACACGCTGCACAGCATACCTGTAACTACTACAAAGAAAAGACTACTACAGCCGAATAAGTCGACATATAAATGGCAGATACATGGTGGAATCATGACATCGTTACACATATTCTGGTGGCCCTGTTTGGAATGGGCTCATGGATCTCAGTGAACTCATTATGGGTTGAGTTGCCAATTGTTGTGGATGTTCTACCTGAAGAGTGGAACTTGCCAGCCTATCTTTCAGTGCTGATTGCATTTGGGAATTTGGGTCCAGTGGCTGTGACTTTAACCCACTACTTTGCTACAGGATGGCTGAATGAACGCTTGGTCATCCACATCATACAAGTGATAGCAGTGGTTGCAGCTGCATTCCTTGCTCTCTTTTGGTCCCAGGAGGTCACAGTTGCTGGAGAGCCAAgatctgtcccgttcctgttgcttacttttattctgtcatttgtCTGCTGCACTTCAAACGTCACCTTTTTGCCTTTCATGTTCAGTTACCCCCCGCAGTACATCCGGACGTTCTTTGTCGGACAGGGTCTTGGTGCACTCTTTCCCTGTGTGGTTGCTTTGGGACAGGGGGTAGGGAAACTAGAGTGCATTGAAACGGCCAACGGCACAGAGCCCCATTATCTCAAAGAAAACTTCCCAGCCCAAAACTTCTTCTGGTTCTTGTCTGTGATGCTGTTGATTTCGGCTGTCTGTTTCCTTGCTCTGACATACAGAGTGGTCACTCCGACTGCGACAGAGGAAATTCCAAAGACTGAGCAAGAAACAGTGAAAACGGAGGAAGAGGCACACCCTTTACAAAATGGAGCTTCCCCGGTTTCTGAGGAACAAGTAGAAGTTGAAAAACAGGCACCTGTTGTAGCCTTCTGGACGTCACGCAATATATATCTGCTCCTGTTGCTGGGAATATCCAATGCTTTGACCAACGGTGTACTGCCATCCGTGCAGAGTTTCTCCTGTTTGCCTTATGGCACCATGACCTTTCACCTTTCTGTCGTTTTGGGCAACATTGCAAACCCTCTGGCCTGCTTTGTGGCCATGTTTGTCCTACTTCGGTCCAGCATTGGTCTTGGTATGATGTCACTGGGAGGTGGTATTTTTGCTGCCTATCTTATGGCTTTGGCTGTGCTGAGTCCCTGTCCACCTCTTTTAGGAAGTCAGTCAGGAGTTTCTCTAGTGATCACATCCTGGATTATCTTCACTGGCTTGTTCTCTTACCTGAAGGTTGTAGTTGGGACTCTTCTTCACGAAGCAGGGCATGCAGCTTTGCTTTGGTGTGGAGTCTTCATCCAGGCTGGCTCTCTCATTGGAGCTCTCACAATGTTTCCTTTAGTCAGTGTATACCAGGTCTTCCAGCGAGCCCAGGACTGCACAAACTACTGCAGTTAATTTAACAGCACTTGATTTTAAAACTCAACCTATGCCTTTAACAGGTATCATTTCTCATCTAACATGGGAAAAGATGTTAAAGGACTTTTCAAGTAAAtggcaatgcaaaaaaagataAGCTTTATCACATTGCATATCTTGGGTAtcatttgagttattttgaatgtgtgtgtgtgtgtgtttgaacacCTTGGTCTACATTAAGTGAAAACCGAAATCAGAAGTTCgcaatttataattacaatatacaCTGTTCAGTGAGGAGATTTATACTGTATGCTTCATCTGTGTAGTATTATACacagtatgtgtttatttttaaaagcaatctGGTCATTGTTGATGAATACAAATCAGGTAAGTTTATATTGTTCCTAACTGTAAAAACTATGCTTACTATGACTccgaaatgaaatatttttttaacgaCCACAAGCAAAACATGTGTATCATCACATTCCATTATTTCTGGATTTATATGTAGACACTCAACTCTGTCTAATGAATTGCTGGTTTTGtttatgtgtacatttttaatgtacatactaaatgtacaaatgtacTGTCATATCTGCCATGTATGGATCTGCCATGTTTTAcccttttgattttaattcttTCAGATGAGGCCAGTATTTTAAGGAAGGTTAATCTGATATTGTTGCTGCTGTTATCTTGCACTTAAATTGTGGTATGTGTAATTTTTGACATTTAGCACTAATTATTCTTGGTACTAACTGCATAAATTCAGAATAAAATCTGGGtttaaatcagatttattaGTTTTGTGAGAGCTGGGTATTTATATTAAGCACTAACTGCATTCCTTACATCTCTAATCATCTGTTAACTGTGCACTGTATTAACATGACATTGATATTTTGTCAGTGAAGATGTaagggaaaaaatattatatttaaatgccaTGAGGCTGAAAATAACATGGTGTCACAGAATTGCTATATGCTGTTTGAATATGTTCACATGTTCTTAAACACTTTTTAAGATCTCAGCTTTTTGTAGTAAATAAATGGTTCGTTTGACAGCAAA

Function

symbol description
slc52a2 Predicted to enable riboflavin transmembrane transporter activity. Predicted to be involved in riboflavin transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Brown-Vialetto-Van Laere syndrome 2. Orthologous to human SLC52A2 (solute carrier family 52 member 2).

NR:

description
PREDICTED: solute carrier family 52, riboflavin transporter, member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218002.1 True 3698 mRNA 0.40 3 16658697 16663534
XM_043218003.1 False 2597 mRNA 0.41 5 16655212 16663515

Neighbor

gene id symbol gene type direction distance location
si:ch73-196l6.5 si:ch73-196l6.5,LOC107748759,LOC107697203,LOC107592102,LOC107563699,LOC107656579 coding downstream 410 16650729 ~ 16654802 (-)
znf516 znf516,LOC107696949,LOC107592028,LOC107688320,LOC107563696 coding downstream 162486 16456613 ~ 16492726 (-)
ngly1 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 536033 16114281 ~ 16119179 (-)
satb1a satb1a,LOC107739638,LOC107593608,LOC107688330,LOC107748681,LOC107656649,LOC107592069 coding downstream 613248 16035473 ~ 16041964 (-)
tbc1d5 tbc1d5,LOC107748680,LOC107656654,LOC107688331,LOC107739565 coding downstream 621700 16011844 ~ 16033512 (-)
eppk1 eppk1,LOC107656638,LOC107748699,LOC107697067,LOC107739550,LOC107592034 coding upstream 4428 16667962 ~ 16681330 (-)
pleca LOC107748698,LOC107697034 coding upstream 22591 16686125 ~ 16772130 (-)
eif3eb eif3eb,LOC107748702,LOC107592037,LOC107656637,LOC101483159,LOC108249253 coding upstream 111091 16774625 ~ 16783225 (-)
LOC122323461 LOC107592103,LOC107697214,LOC107656599,LOC107748761,LOC107563715,LOC107739630,LOC100537369 coding upstream 129715 16793249 ~ 16796520 (-)
nudcd1 nudcd1,LOC107697115,LOC107563704,LOC107739547,LOC107748703 coding upstream 151292 16814826 ~ 16831747 (-)
G133783 NA non-coding downstream 52676 16571601 ~ 16602536 (-)
G133775 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 93236 16560106 ~ 16561976 (-)
G133774 sall3,sall3b,LOC107592031,LOC107696994,LOC107563697,LOC107656642,LOC107739555 non-coding downstream 95381 16559417 ~ 16559831 (-)
G133772 sall3,sall3b,LOC107696994,LOC107592031,LOC107739555,LOC107656642,LOC107563697 non-coding downstream 96762 16557441 ~ 16558450 (-)
G133771 NA non-coding downstream 104127 16550387 ~ 16551085 (-)
G133812 NA non-coding upstream 36155 16699689 ~ 16699907 (-)
LOC122323643 NA non-coding upstream 190704 16854238 ~ 16867352 (-)
LOC122323645 NA non-coding upstream 204323 16867857 ~ 16882412 (-)
G133856 si:dkey-240h12.4,LOC107599596,LOC108440884,LOC107565569,LOC107748765,LOC107739598,LOC107656625,LOC107667793 non-coding upstream 309972 16973506 ~ 16978942 (-)
G133865 NA non-coding upstream 310497 16974031 ~ 17041793 (-)
mbpa mbpa,tshz1,LOC107563706,LOC107748691,LOC107592027,LOC107739558,LOC107696938,LOC107688322,LOC107593600,LOC107592029,LOC107696978,LOC107739556,LOC108429099 other downstream 146617 16280957 ~ 16508595 (-)
npy LOC107592012,LOC107748754,LOC107656665,LOC107688404 other downstream 730927 15922223 ~ 15924285 (-)
evx1 evx1,LOC107688412,LOC107602371,LOC107710323,LOC107654696,LOC107748750,LOC107592093 other downstream 914883 15736947 ~ 15740329 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other downstream 994492 15659919 ~ 15660720 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other downstream 1006633 15644862 ~ 15648579 (-)
G133834 pkhd1l1,LOC107592039,LOC107748704,LOC107739541,LOC107656576,LOC107563710 other upstream 193445 16856979 ~ 16869564 (-)
LOC122323321 NA other upstream 219453 16882987 ~ 16883480 (-)
G133842 NA other upstream 222926 16886460 ~ 16887000 (-)
LOC122324114 NA other upstream 226295 16889829 ~ 16890874 (-)
LOC122324112 NA other upstream 228158 16891692 ~ 16892581 (-)

Expression


Co-expression Network