skiv2l (skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354)


Basic Information

Item Value
gene id skiv2l
gene name skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6456092 ~ 6473551 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218028.1
TTACTATTATGCTTAAaagtattaaacaaaaatattcgtGAAAAACTTCCGTCCCTTTAGTTCTGCGCAGTTTCCTGCAGGACTGAAACTTTATTGATACCGAAGAACTACAGAGTGACATGGACAAAACAGATCTGCCCCCAAGGGGTCCTGATGATTTGCCCCTGTCTCTCCTGGAGATGGGCTGCTCGGGGAGATTTGAGCTCATCACACACCCACTGCCCAAAAACAGACCCCTGCCTCCACACAGCACGCTTCCCCATGGCCTCCCTCCTACGTGTCTGGATCTAAAAACAGAGGTAGAAAAGCGTTTTCTCCGAGACCCCGCTTGGCTCCCGGTACACGATGTAGACGATGCCTTCCAGAAGTTCCTCAAGATAAGTACGCGAGACACAGAGGTGGACTCACTCCTGCACTGCTCGCTGTCTCCACTGCACTCTGGTCTGTCTGTGGTCAGAGATCCCACCACCGGTATGCTGCTGGACTTCACTGAGGTGTTATTAGAGGACACAGGTTTGTCTGCCAAAAATTCTCTGTCATTACAAAGACAGCCTGGACCTCCATCAGAGAGCCTGAGAGGGAGCAACACAAACTACCCATTCTTGCCAGCCGGCATGGAAGAACTGACGTTAGAACAGATCAAGAAAAAGTCAGAGCTGGAAGAAGACGTAGATTTTGAGAAAGACTTGTTGACGGTTCCTCCTGGGCTGAAGGCTGGGATGGACTTCAGTGACAAAGAAGCCAAAACCACGAGGAGCGAGGTGAACCTGCTGTCTCTCCTGTCGACCTTTGACAATGTCATTGACGCTTTTCCTGAGGAGAAAGAGGGAGTCTCACGAAAAGAGGAGACTGCTAAACTTCCCAGAACTAACAGCCTGGAGGACCTGGGAATCAAAGATTCAGGCAGCTCTCCTTCTCAGCCTCCGGCCAACACTTTAAGTCCGACTGAACAAACAAAGAAACCGCAGGGGGACAATAAAAAATGGGCCGTTCCTGTGGACATCACCTCACCGTGTGATGACTTCTACAAGCGTATCCCTGACCCGGCCTTCAAGTATCCCTTCGAGCTGGACTTGTTTCAGAAGCAGGCTGTCCTCCGACTCGAAGCTCATGACTCTGTGTTCGTCGCGGCTCACACATCAGCTGGCAAGACCGTGGTGGCTGAATACGCAATTGCGCTTTCCCAGAAACACATGACCAGGACCATTTACACGTCCCCCATTAAGGCCTTGTCCAATCAGAAGTTCAGAGACTTCAAGAACACGTTCGGTGACGTGGGCCTTTTGACCGGAGACGTCCAGCTGAGCCCCGAGTCCTCGTGTCTCATCATGACCACTGAGATCTTGAGATCTATGCTCTATAACGGCTCCGAGGTCATCCGGGATCTGGAATGGGTCATTTTTGATGAGGTTCACTACATCAATGATGCAGAGagGGGAGTGGTGTGGGAGGAAGTGCTCATCATGTTGCCGGAGCACGTTAGCATCATCCTGCTGAGTGCCACGGTGCCAAACGCAGTGGAGTTCAGTGAATGGAtcggGCGTATCAAGAAGAGGCCCATCTATGTGATTAGCACAGTTAAAAGGCCTGTTCCTCTAGAGCACTATCTGTATACTGGCAACAGCACCAAGACTCAGAAAGAGCTCTTCCTGTTGCTGGACTCCACCGGAAACTTCCTCACTAAAGGctACTACGCCGCAGTAGAAGCCAAGAAGGAACGCACAAGTAAACATGCTCAGTCTTTCGGCACGAAGAACGTATCGCAGCACAACACGACAGCCAGTCAAGATCGAGCCGTTTGGCAGACCCTGCTGAACTACCTGTCTCAGAGGCAGCAGACTCCAGTGGTGGCCTTCACCTTCTCTCGGACGCGCTGTGATGAAAACGCCCGCTCTTTGACCTCTCTGGACCTCACCAGCTCCATAGAGAAGAGCGAGATCCACTCCTTCCTGCAGAAGAGCCTGACCAGGCTGAGAGGAGGCGACCGACAGTTACCGCAGATCCTGTTGATGCGTGATTTGCTGAAGAGAGGTATTGGTGTTCATCACAGCGGCATCCTGCCAATCCTGAAGGAGATCATCGAGATGCTCTTCTCCAGAGGTTTAGTGAAGGTGCTGTTTGCTACGGAGACGTTTGCCATGGGTGTGAACATGCCTGCCAGGACCGTGGTGTTCGACAGCATCCGCAAACACGACGGCACGGGATTCAGAAACCTGCTGCCCGgtgagtACATTCAGATGGCGGGCCGTGCAGGCAGAAGAGGTTTGGACGCTACAGGGACCGTTATCATCCTCTGTAAGGCTGGAGTTCATGATATGGGAGACCTCCACTCTATGATGCTGGGGAAGCCGACAGTGCTGCAGTCTCAGTTCAGACTGACCTACACCATGATCCTCAATCTGCTGCGTGTGGAGGCCCTGAGGGTCACCGACATGATGAGGAGGAGCTTTTCTGAGAACCACAGGGATACGCAGGCTCACGAGAAGAGAATAAGTGAACTGAGAAACACGGTCTCCTCTCTCCCTCCGCTGGACACGGAGGGCCAGTTATCTGATATACTGTCATATTACCATACCATCACAGAGCTGCGCATCACCACAGAGACCctgcagcgAGCAGTGCTGGAGTCAGTGAATGGACTCAAAGCTCTGTCTGTTGGGAGGGTGGTAATAGCGAACAACGGCCAGCATCACAACGCCCTGGGAGTCATCCTACAGGTGTCCAGTGATGCAGTAAATCGCACGTTCACCGCTCTCATTATCTGTGAGAAGGGTAATGAAGAGGCGGTGGGTGATGATCGGTCTAATAAAGCCTTACATCCCATTTACAGCACCTCACTGTTTATTCCAGAAGGACCCTGCAGTCATACGGTGCAGAAACTCAAGTTGCAGGACATCTCTGCCATCACAAGCAAAACCCTGAAGGTCATTCCAGAGAGGATCATCGACAACTACAATAAAAGACAGCAGCCACGCTTCAGACTTGATCCACCGGGTCAGGCTATTTCGACAGCTACTCAGGAGCTCCTGCGACTGGCTGAGGCCAATCCCACGAGCATTGCGACCCTTGACCCTGTGAATGACCTGCACCTGAAGGGCGTGGATGTGGTGGAGGGAGTGATGAGGCAGCGGGTGTTACAGGACTGTCTCAAAGACTTCCACTGCATCCACTCGCCCACCTTCACTGAACAGTTTGCGCGCGTGCAGGAGAGGATGAGTGTGCAGGAAGAGCTGGACAAGCTTCTGTTCCTGGTGTCAGATCAGTCATTGACTCTGCTGCCTGAGTACCATCAGAGAATCAAGGTGCTGGAAGCGCTTCAGTATGTGGACGGCACTGGAGCGGTGCAGCTGAAGGGTCGTGTGGcctgtcagatcagcagtcaTGAGCTGCTGCTGACTGAACTCCTGTTTGAGAACACGCTGAGTCCTCTCGCCCCCGAGGAGAGCGCCGCCCTGCTGTCCTGCCTCGTCTTCACGCAAAACACCCAGATAGACCCACACATCACCAACACGCTACAGGAGGGCATCAATCAAGTGCTCAGTGTGGCCCAGCGTATCGGTGAGCTGCAGAGGGATTGTGGGATAGCTCAGACGGCTGAAGACTTTGTGGCCCAGTTCAAGTTTGGCCTGACTGAGGTTGTATACTGCTGGGCAAGAGGCATGCCGTTTTCTGAGATCGCCCAGCTGACGGACGTGCAGGAGGGGACGATCGTACGCTGCATCCAGAGGCTGGATGAGGTCCTGAAGGAAGTGAGACAGGCCGCTCGTATAGTGGGCGACTCGGTCCTGGGCAGCAAGATGGAAAGGGCCTCTCTGGCCATACGCAGAGACATTGTGTTCACCGCCTCGCTCTACACGCACTGAGACGGAGAGAGACGGGCAAATGCGTTTGATTTGGATGCAAAAGAGAGCGTACAGAATATGGACCTGAGAAACTGTACTTGAATAACTGAGTGCATGTTTACATTAGGTTGAGTATGCATGTGCGAGCGACCCCTCACCTGACCAAAGATGTGATCTCAAAATGAGATTGACGTCAGCCAACTGTAATTAACTGTACAGCAATAAAATAAGCTGTATGTGAAACACTGGTTTCATCCATGTTGccagaaaaatgtgaaattatacaGTGCTTTGGCTTTTTGCACTGCAGTgggtttttatgtgtgtgtgtcgatATTATTGCTGCATTTggtgtcatttttcattttttattattttctttttatcacgAGAGACGTGCTCTCTCTTAACCCTCTGCACccaccttttattattttattattatagctcataaataaaaaatctaaatcataaATTAGCCCCTAGATCAATTATGACCACATCATTTAGGAGTAAACCATTTTGAtcttatgtttttaattcatgatTAAGTTTCACATTAGTCCtgaattttttatcatttttcttaGTACCTTAAGAAATTTATACCAGCTTATGTATTATTCTGCTTTCAATAAATAAACGGTTTACAATAGTACttgta

Function

symbol description
skiv2l Predicted to enable RNA helicase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay. Predicted to be part of Ski complex. Human ortholog(s) of this gene implicated in trichohepatoenteric syndrome 2. Orthologous to human SKIV2L (Ski2 like RNA helicase).

NR:

description
PREDICTED: helicase SKI2W

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12599 SKI2, SKIV2L; antiviral helicase SKI2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218028.1 True 4506 mRNA 0.50 29 6456092 6473551

Neighbor

gene id symbol gene type direction distance location
prrt1 prrt1,LOC107694357,LOC107677474,LOC107584308,LOC107711307,LOC107595589,LOC107754825 coding downstream 470 6447348 ~ 6455622 (-)
LOC122323486 neu1,LOC107694358,LOC107754788,LOC107711321,LOC107677466 coding downstream 22694 6429635 ~ 6433398 (-)
LOC122323484 neu1,LOC107677467,LOC107711305,LOC107694326,LOC107595619,LOC107754787 coding downstream 26601 6425467 ~ 6429491 (-)
prrc2a LOC107754821,LOC107694359,LOC107584310,LOC107711320,LOC107595587,LOC107677454 coding downstream 40915 6395759 ~ 6415177 (-)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC101175345,LOC100710962,LOC106573472 coding downstream 61086 6390817 ~ 6395006 (-)
LOC122323305 LOC107754826,LOC107584364,LOC107694352,LOC107595620 coding upstream 4965 6478516 ~ 6484099 (-)
LOC122323303 LOC107584307,LOC107694350,LOC107711327,LOC107595591 coding upstream 12366 6485917 ~ 6494196 (-)
sacm1la sacm1la,sacm1l,LOC107694349,LOC107677458,LOC107584306,LOC107711326,LOC107754789,LOC108273174 coding upstream 20940 6494491 ~ 6508430 (-)
gabbr1b gabbr1b,gabbr1,LOC107677456,LOC107584305,LOC107595614 coding upstream 46315 6519866 ~ 6625054 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596,LOC107677462 coding upstream 166458 6640009 ~ 6648242 (-)
G131114 NA non-coding downstream 16010 6438205 ~ 6440082 (-)
G130999 NA non-coding downstream 100617 6354956 ~ 6355475 (-)
G130982 NA non-coding downstream 162826 6248351 ~ 6293266 (-)
G130978 NA non-coding downstream 219815 6234044 ~ 6236277 (-)
G130973 NA non-coding downstream 257731 6198125 ~ 6198361 (-)
G131153 NA non-coding upstream 220341 6693892 ~ 6704443 (-)
LOC122323439 NA non-coding upstream 228932 6702483 ~ 6708065 (-)
LOC122324260 NA non-coding upstream 229772 6703323 ~ 6703389 (-)
LOC122324261 NA non-coding upstream 230320 6703871 ~ 6703937 (-)
G131165 NA non-coding upstream 280863 6754414 ~ 6755435 (-)
G131006 LOC107754818,LOC107731580 other downstream 92920 6362347 ~ 6363172 (-)
LOC122324254 NA other downstream 1050456 5404516 ~ 5405636 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other downstream 1195928 5141505 ~ 5260164 (-)
G130763 NA other downstream 1203903 5245353 ~ 5252189 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 1233209 5087244 ~ 5222883 (-)
sh3bp5lb sh3bp5lb,LOC107711328,LOC107677461,LOC107694325,LOC107754828,LOC107584304,LOC108435520 other upstream 154047 6627598 ~ 6639220 (-)
polr1h znrd1,LOC107584303,LOC107754832,LOC107677479,LOC107694346,LOC107595594 other upstream 174839 6648390 ~ 6649389 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other upstream 376818 6850369 ~ 6858660 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 883070 7356621 ~ 7360143 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other upstream 921629 7395180 ~ 7397946 (-)

Expression


Co-expression Network