nelfe (nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324)


Basic Information

Item Value
gene id nelfe
gene name nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6473609 ~ 6477150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218029.1
aaaaaaaataattagggACAAACTATTTGTTTGCGCTGGTTCCGCGGATGACAACAGATTGCGTCATAACTGTGCGCCGAGTGGATTCCTGCAGCCGCTTATTCACGTTTTCCGAATTTAAGATCCACGAAAATGGCAATATTTCCCAACTCACTGACAGAAGAGGAGGAAGCACTGCAGAAGAAATATGCTAAACTAAAGAAAAAGAAAAAGGCCCTCATGGCTCTGAAGAAACAGAGCTCCACCAATCAGACGAGTCAGACGGGACTGAAGCGCACTTTGTCAGATCAGCCGGTGGTGGACACAGCGACCGCAACAGAGCAGGCCAAAATGCTGATCAAGTCTGGAGCCATCAGCGCCATCAAATCAGAGAACAAGAACTCTGGCTTCAAGCGCTCCAGGACACTTGAGGGTAAACTGAAAGATCCTGAGAAAGGCGCTGCCCCAGCTTTCCTGCCGTTTCAAAGAAGCGTCTCTACAGACGAGGAGCCTCCTGATTCTGCTAAACGAATCCACAGGAAGTCCCTGTACGAGAGTTTTGTTCCTGGAGATCGAGCTCGTGAAGACGAGGGAGGAATGTCGAGCCGAGATTCTGAGCGCGATCGGGAAAGAGAGATCGACTGGGAGAGAGATCGAGAAAGAGACAGGGAACGGGACAGAGAGAGGGACCGGGAAAGAGGCAGGGAGAGAGAGCGGGACCGTGAGCGTGAACGGGAGAGGAGCCGGGATAGAGAAAGGGACAGAGACAGGGACAGAGAACGAGAGCGAGACAGGGAAAGAGACCGAGAGAGGGACGGACCCTACAGACGGTCAGACTCGTATCCAGAGCGAAGAGGTGTGCGAAAAGGAAACACTGTGTATGTATACGGCACCGGTTTAGTGGAAGACAGTTTGCGCTCTGCTTTTGCACAACATGGAAACATCATTGACCTTTCCATGGACTCGCCGCGCAATTGTGCCTTCGTCACCTTTGAGAAGATTGAATCAGCAGACCAGGCTGTGGCAGAGCTGAATGGCACTACTGTGGGTGACGTCAACATCAAAGTCAGCATTGCTAGGAAGCAGCCCATGCTTGATGCCGCCACGGGGAAATCTGTCTGGGCTTCTCTTgCTGTGCAGAACAGTGCCAAGGGCTCGTACAGAGACAAACGGAGCCAGGTCATCTACACCGAAGATTTTTGAAAACGTTCATCTAGAACATGTTAAACTTGTTTAAAAAGGTCCAGCATTAGATTTTGCCTACATACAGCAAGAGCTTTGTTTGTCAAAGAAGTGATGAAGTAAAGCTGttacttttctttcatttaatgaGCTGCATTTACTGCTCTGTGTTTCTGGACATTTAGCTCAGCCGTGTTCagtaaataatcaataaacGTTTCCATCGGCA

Function

symbol description
nelfe Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFE (negative elongation factor complex member E).

NR:

description
PREDICTED: negative elongation factor E-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K15182 RDBP, NELFE; negative elongation factor E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218029.1 True 1390 mRNA 0.49 11 6473609 6477150

Neighbor

gene id symbol gene type direction distance location
LOC122323487 LOC107694355,LOC107754822,LOC107595588,LOC107711322 coding upstream 30481 6435232 ~ 6443128 (+)
gon4la LOC107754817,LOC107694363,LOC107584344 coding upstream 96010 6365518 ~ 6377599 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding upstream 112417 6346789 ~ 6361192 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding upstream 129349 6266383 ~ 6344260 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding upstream 221270 6234025 ~ 6252339 (+)
tnfa LOC107694347 coding downstream 37950 6515100 ~ 6517362 (+)
ddx39b ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881 coding downstream 172149 6649299 ~ 6659826 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding downstream 227690 6704840 ~ 6716985 (+)
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding downstream 290491 6767641 ~ 6769745 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605 coding downstream 381919 6859069 ~ 6877006 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding upstream 63868 6405385 ~ 6409741 (+)
G131010 NA non-coding upstream 79652 6392916 ~ 6393957 (+)
G130950 NA non-coding upstream 139365 6331665 ~ 6334244 (+)
LOC122324219 NA non-coding upstream 209655 6255006 ~ 6263954 (+)
G130944 NA non-coding upstream 245522 6227746 ~ 6228087 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding downstream 161331 6638481 ~ 6639229 (+)
G131241 NA non-coding downstream 479419 6956569 ~ 6956786 (+)
G131245 NA non-coding downstream 499380 6976530 ~ 6976854 (+)
G131249 NA non-coding downstream 504800 6981950 ~ 6982175 (+)
G131252 NA non-coding downstream 536739 7013889 ~ 7014418 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other upstream 72311 6371835 ~ 6401298 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other upstream 550636 5785130 ~ 5922973 (+)
LOC122323254 sdhaf3,LOC107702681 other upstream 720692 5745801 ~ 5752917 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 887954 5583505 ~ 5585655 (+)
LOC122324077 NA other upstream 1245383 5225081 ~ 5228226 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 42770 6519920 ~ 6526080 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 214824 6691974 ~ 6696204 (+)
G131183 NA other downstream 356719 6833869 ~ 6836858 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other downstream 423485 6900635 ~ 6902398 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 569463 7046613 ~ 7066858 (+)

Expression


Co-expression Network