gnb3b (gnb3b,LOC107665150,LOC107727720,LOC107753988,LOC107666347,LOC108433753,LOC107563025)


Basic Information

Item Value
gene id gnb3b
gene name gnb3b,LOC107665150,LOC107727720,LOC107753988,LOC107666347,LOC108433753,LOC107563025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 20054269 ~ 20058841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218046.1
ATGGGTGAAATGGAGCAGATGAAAAAGGAGGCAGAAGCCCTGAAGACACAGATCGAGGCCGCTCGTAAAGCAGTGAACGACACAGACATGGCCTCCGCTGCTTCTGGGGTGGCTCCGGCCCCTCGGGTCCAACTCAAGACCAGGAGGACCCTTAAAGGCCATCTGGCCAAAATTTATGCCATGCACTGGAGTACAGACAACAGGCTAATGGTCAGTGCATCACAGGACGGCAAGCTTCTCATCTGGGATTCTCACTCTGGAAATAAGGTCAATGCTGTTCCCCTCAAGTCCTCATGGGTGATGACCTGTGCGTATGCTCCTTCTGGAAACCTTGTGGCCAGTGGTGGTCTCGACAACATGTGTACTGTCTACAACTTGAAGACACCTGTAATCAAGACCGTGAAAGAATTGGACGCTCACACAGgttACTTGTCCTGTGCACGCTTCTTCAGTGACACGGAGATTTTAACCTCCTCTGGTGATACCACATGtgcattgtgggatttgGAGACCGGAAAGCAGAAAACGGTTTTCCTGAACCACGTTGGCGACTGCATGTGTCTGTCACTGTCTCCAGACATGAGCACCTTTGTTTCTGGCGCTTGCGACTCTCTGGCCAAGCTGTGGGACGTCAGGGATGGCCAGTGCAAGCAGACCTTCCAGGGTCACACGAGTGACATCAATGCCATTTCATTCTTCCCTAGCGGCAATGCCATTATCACCGGCTCAGATGACTGCACATGCAAAATGTATGATATTCGCGCCGATCAGGAAGTGATCGGTTACCAGGACGCTGCCCTGAACAGTGGCGTAACATCACTGGCTTTATCCATGTCTGGCCGTCTCATCTTTGCCGGCTACGATGACTTCAACTGCAATATTTGGGACTCGCTAAAGGGCGAGAAAGTGGGCGTGTTGTCCGGCCATGACAACAGGGTGAGCTGCACCGGAGTACCACCAGATGGCATGTGTGTTTGCACTGGCTCATGGGACAGCTTCTTGAAGATTTGGAACTGA

Function

symbol description
gnb3b Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in epiphysis; eye; pineal complex; retina; and retinal cone cell. Human ortholog(s) of this gene implicated in artery disease (multiple); congenital stationary night blindness 1H; familial hyperlipidemia; mental depression; and type 2 diabetes mellitus. Orthologous to human GNB3 (G protein subunit beta 3).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218046.1 True 1017 mRNA 0.52 8 20054269 20058841

Neighbor

gene id symbol gene type direction distance location
tpi1a tpi1a,LOC107754015,LOC107666351,LOC107665177,LOC107727722,LOC107563024,LOC107549875,LOC103040446 coding downstream 1971 20046566 ~ 20052298 (-)
chd4a chd4a,LOC107748913,LOC108433757,LOC107549834,LOC107086130 coding downstream 24518 20005295 ~ 20029751 (-)
fbxl20 fbxl20,LOC107666314,LOC107727724,LOC107665129,LOC107563017,LOC107549884 coding downstream 106579 19930981 ~ 19947690 (-)
st3gal1 LOC107665130,LOC107727731,LOC107549887 coding downstream 339365 19703796 ~ 19714904 (-)
LOC122323475 LOC107669946,LOC107554574,LOC107727308,LOC108274547 coding downstream 645617 19380778 ~ 19408652 (-)
stx1b stx1b,LOC107666328,LOC102220115 coding upstream 25341 20084182 ~ 20121636 (-)
prf1.3 NA coding upstream 64704 20123545 ~ 20127676 (-)
LOC122323921 krt92,cki,cyt1l,cyt1,LOC107665142,LOC107727710,LOC107666325 coding upstream 113656 20172497 ~ 20174355 (-)
LOC122323285 LOC107756220,LOC107670108,LOC107600819,LOC107689591,LOC108411842,LOC106579793 coding upstream 459373 20518214 ~ 20529269 (-)
G134757 LOC107665134 non-coding downstream 84554 19924705 ~ 19969715 (-)
G134760 NA non-coding downstream 165441 19888620 ~ 19888828 (-)
G134758 NA non-coding downstream 207910 19845896 ~ 19846359 (-)
LOC122324126 NA non-coding downstream 525566 19497954 ~ 19528703 (-)
G134675 NA non-coding downstream 561237 19492535 ~ 19493032 (-)
G134804 LOC107727707,LOC107665118,LOC107549831 non-coding upstream 82668 20141509 ~ 20141876 (-)
G134809 si:dkeyp-113d7.1,LOC107727714,LOC107665141,LOC107549870,LOC108438414,LOC107563030 non-coding upstream 95491 20154332 ~ 20154890 (-)
G134816 NA non-coding upstream 128379 20187220 ~ 20188695 (-)
G134815 LOC107729882,LOC107693320,LOC107589419,LOC107753511,LOC107599494,LOC107670002 non-coding upstream 129948 20188789 ~ 20190143 (-)
G134836 NA non-coding upstream 150221 20209062 ~ 20212587 (-)
LOC122324012 NA other downstream 365883 19670787 ~ 19688386 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other downstream 401462 19542782 ~ 19652807 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other downstream 1121041 18876614 ~ 18933228 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other downstream 1363020 18687349 ~ 18691249 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 1812656 18225609 ~ 18241613 (-)
G134895 NA other upstream 323179 20382020 ~ 20382727 (-)
G134944 LOC107756202,LOC107600825,LOC107689598 other upstream 390712 20449553 ~ 20451196 (-)
G134948 zgc:162872,LOC107756215,LOC107692254,LOC107600823 other upstream 404108 20462949 ~ 20468681 (-)
G134949 LOC107670072,LOC107756217 other upstream 411379 20470220 ~ 20473163 (-)

Expression


Co-expression Network