tpi1a (tpi1a,LOC107754015,LOC107666351,LOC107665177,LOC107727722,LOC107563024,LOC107549875,LOC103040446)


Basic Information

Item Value
gene id tpi1a
gene name tpi1a,LOC107754015,LOC107666351,LOC107665177,LOC107727722,LOC107563024,LOC107549875,LOC103040446
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 20046566 ~ 20052298 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218050.1
TGACGTTCCTCTCGTTCTCCCGACGCCAAAGCTCCTCCTCCCGGATATTAACAAGCACGCCTTCGCCATAGTAGCGTTCGTACGTCGTCTAACGGTAGCACTGTCGTCGTGTTCGGTTCGCCCGGTTCGTCGCGCAGAAATGTCCTCGAGAAAATTCTTCGTCGGCGGAAACTGGAAAATGAACGGCGACAAAGAGAGTTTGGGCGAGCTCGCAATGACCTTGAACACGGCCAGTCTCGACGACGAAACAGAGGTGGTGTGTGGAGCACCGTCCATCTATCTCGATTATGCGAGGTCTAAGCTGGACCAGAGGATCGGTGTGGCCGCCCAGAACTGCTATAAGGTTCCCAAAGGAGCCTTCACCGGGGAGATCAGCCCAGCGATGATTAAAGACTGCGGCGTCGACTGGGTGATTCTGGGCCATTCCGAGAGGCGTCACGTGTTTGGCGAGAGCGACGagCTGATTGGACAGAAGGTGGCCCACTGCCTGGAGAGCGATTTGGGTGTGATCGCCTGCATTGGGGAGAAACTGGAGGAGAGAGAAGCCGGAACCACTGAGGACGTGGTGTTTGAACAGACCAAAGTCATTGCAGACAATGTGAAGGACTGGACTCGTGTGGTTTTAGCCTATGAACCAGTCTGGGCCATTGGCACTGGTAAAACAGCCACTCCTGATCAGGCTCAGGAGGTGCACGAGAAGCTGAGAGGCTGGCTGAGAGAGAACGTGTCGGATGCGGTGGCTGACTCGATGCGCATCATCTACGGAGGCTCTGTTACTGGAGGAAACTGCAAAGAGCTGGCATCCCAGCCTGACGTTGATGGCTTCCTGGTTGGAGGCGCTTCCCTCAAGCCAGAGTTTGTTGACATCATCAATGCCCGCTCATAGAGATGCTCAGCCTTTTCGTGGGTCCAAGACGACCGCACCGCCCAATCAGTGTACACCGGCTTCTTGTCATTCCAGCAGGTCTGAAAGTGCATTTGTGGTCGTGTTGCTTTCGCTCACCTGCTTGTTCAGCAGTCGGGGTGGGTTAGTGGAGCGGAATATTAATATCAACTCCTTTCTCACTTAAAGTGATAGAAGAGAGCTCGGGCAGGTTAGTTTGTTATTTGTAACTGCTGTTGTTGTCTATGCACTTCCAGAGCACACTACTTGAAACCTAGCACTGTATTCTGCACGTTCATTAACAAGACCAGCGTTGAACGCTTAACTGAGTTTGTAGTGACTTAATGAGCACTTTATCCTCTGTAGAAATGACTACCTcgatagaaaataaaaatgtatttgtctca

Function

symbol description
tpi1a Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).

NR:

description
PREDICTED: triosephosphate isomerase

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0006098 pentose-phosphate shunt biological_process
GO:0004807 triose-phosphate isomerase activity molecular_function

KEGG:

id description
K01803 TPI, tpiA; triosephosphate isomerase (TIM)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218050.1 True 1290 mRNA 0.52 7 20046566 20052298

Neighbor

gene id symbol gene type direction distance location
chd4a chd4a,LOC107748913,LOC108433757,LOC107549834,LOC107086130 coding downstream 16815 20005295 ~ 20029751 (-)
fbxl20 fbxl20,LOC107666314,LOC107727724,LOC107665129,LOC107563017,LOC107549884 coding downstream 98876 19930981 ~ 19947690 (-)
st3gal1 LOC107665130,LOC107727731,LOC107549887 coding downstream 331662 19703796 ~ 19714904 (-)
LOC122323475 LOC107669946,LOC107554574,LOC107727308,LOC108274547 coding downstream 637914 19380778 ~ 19408652 (-)
rragcb rragcb,LOC107669953,LOC107727266,LOC107551762,LOC107681629,LOC107700741,LOC107730935 coding downstream 957783 19081572 ~ 19088783 (-)
gnb3b gnb3b,LOC107665150,LOC107727720,LOC107753988,LOC107666347,LOC108433753,LOC107563025 coding upstream 1971 20054269 ~ 20058841 (-)
stx1b stx1b,LOC107666328,LOC102220115 coding upstream 31884 20084182 ~ 20121636 (-)
prf1.3 NA coding upstream 71247 20123545 ~ 20127676 (-)
LOC122323921 krt92,cki,cyt1l,cyt1,LOC107665142,LOC107727710,LOC107666325 coding upstream 120199 20172497 ~ 20174355 (-)
LOC122323285 LOC107756220,LOC107670108,LOC107600819,LOC107689591,LOC108411842,LOC106579793 coding upstream 465916 20518214 ~ 20529269 (-)
G134757 LOC107665134 non-coding downstream 76851 19924705 ~ 19969715 (-)
G134760 NA non-coding downstream 157738 19888620 ~ 19888828 (-)
G134758 NA non-coding downstream 200207 19845896 ~ 19846359 (-)
LOC122324126 NA non-coding downstream 517863 19497954 ~ 19528703 (-)
G134675 NA non-coding downstream 553534 19492535 ~ 19493032 (-)
G134804 LOC107727707,LOC107665118,LOC107549831 non-coding upstream 89211 20141509 ~ 20141876 (-)
G134809 si:dkeyp-113d7.1,LOC107727714,LOC107665141,LOC107549870,LOC108438414,LOC107563030 non-coding upstream 102034 20154332 ~ 20154890 (-)
G134816 NA non-coding upstream 134922 20187220 ~ 20188695 (-)
G134815 LOC107729882,LOC107693320,LOC107589419,LOC107753511,LOC107599494,LOC107670002 non-coding upstream 136491 20188789 ~ 20190143 (-)
G134836 NA non-coding upstream 156764 20209062 ~ 20212587 (-)
LOC122324012 NA other downstream 358180 19670787 ~ 19688386 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other downstream 393759 19542782 ~ 19652807 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other downstream 1113338 18876614 ~ 18933228 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other downstream 1355317 18687349 ~ 18691249 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 1804953 18225609 ~ 18241613 (-)
G134895 NA other upstream 329722 20382020 ~ 20382727 (-)
G134944 LOC107756202,LOC107600825,LOC107689598 other upstream 397255 20449553 ~ 20451196 (-)
G134948 zgc:162872,LOC107756215,LOC107692254,LOC107600823 other upstream 410651 20462949 ~ 20468681 (-)
G134949 LOC107670072,LOC107756217 other upstream 417922 20470220 ~ 20473163 (-)

Expression


Co-expression Network