c19h18orf21 (LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336)


Basic Information

Item Value
gene id c19h18orf21
gene name LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10012408 ~ 10025651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218058.1
TGCATTATGGGTAATATCGAAGTAAAGACGCTGGTCTGGTACTATTTCCTGTAGTCGCGCTGGACTAAGAAAATAGGTTCCTTGCGCTCTTTTATTACTGACCGCAGTTATCTTCTAAGGCCGGTTTTGTAGTAAGTTGAAAGCTTTTTATCGCGAAGGTTTGGCTGTTAAAGTAGACGCGATGACGCAGATGTTCTTGTTCAAAGCTTCTTTACTTTACAAAGACCTTTGCCCCGAGCAGTCGCGCTTTCTCATGCAAAGGCGTCAGCTCAATGCGCCCGCCCTGCCGGGGGCTATGATTTGCCCCTTCTGCTTTCAGTGGCGACAACTGGGCAATCATCACGTTCGTCTGCGGCCCAAGCGGAAGCCCACGGCGGCGATCACAAGACTTTTGATGAGAGAGGCGGCAGGGAAGAGACTGAGCACAGAACAGACCCTGGTCCTTCAAAGGTTTAAAAGGGCCTCCAATGCTCTGatgGCAACGTGTCACACCTGTAATAAGATGTCCAGACAACCTGGAATGAATCGGGAGCTTCTGACTTCACTGTCAAACTGCCGAAGTACCCCAGGAAGCGCAGGCAAACGCAGAACTCCACAGTCAGCCAACAGGTCTACTCCAAAATCTCTGAAAGACAGAACACCAAATGGCACACCTAGGTCAGTATCTTTAGACGCCGGCTCGTCATCTTCAAAGCCCGGCAGTGCGAAGTCATCGCCTTTCGCCCGCCTCAAAAAGATCCTGATGCTGGAAAGCAAACAGCAGAGCAAGAAAGGTGGTCTGAAGGACTTGCTTTCATATCTCTGAAGATCTCAGGGTCATTAAAATGAAAGACTTTGGCCCACTTTAAGTGGAGCTGATAAGTTCAGAGCAGGAACGTGATGGCGGTCCTTGTGTGTTACATTGCCACCTAGTGGAGGAGCCGCTAGGCTGGATTGTACTGAAGGACAGTTAAATAGTGAAGAGAACATCTCCTTTTCATCCATCAAGTGTCTGTTTCTGAATCCATGTGGTGTGTGCTACAGAACCATgctgtgactttttttatttgtgacgTTTTTTATGTTCATGATCCCACATACTGTTCATTTCTGCACAAGGAAGAGTACTTTTATATGTCGTgtgtttaatgttcatttttgtacACTTTGAATTCACACATTTGTATCACCAGCTCTAAGTTTGGATCACTGatattaaaaggtttttctttacACTTGGCTTACACGCAGAtattagtattgttttttttattattattaaaaattgtgcTGGCTTGTTTACATCTGATGGCGTATTTGCTGTCAATCTGTGTAGCAAAGACCAAAATAtttcatactatttttttttcctcagtacatttaaaaagaaaggtgTTTTTGTCGTCTTTGATCTTTGACAGatcatttttcaataaaaactacaatattGA

Function

NR:

description
PREDICTED: UPF0711 protein C18orf21 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218058.1 True 1430 mRNA 0.44 5 10012408 10025651

Neighbor

gene id symbol gene type direction distance location
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding downstream 649 10007041 ~ 10011759 (-)
otud6b otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366 coding downstream 97349 9912365 ~ 9915059 (-)
lrrc69 LOC107724328,LOC107556328,LOC107653817,LOC107702067 coding downstream 100666 9909104 ~ 9911742 (-)
trib1 trib1,LOC107565192,LOC107724318,LOC107702074,LOC107710180,LOC107556392,LOC107653840 coding downstream 373426 9631241 ~ 9638982 (-)
klhl38a klhl38a,LOC107724354,LOC107565193,LOC107702087,LOC107556389,LOC103030765,LOC108424967,LOC108272409,LOC105907674 coding downstream 427635 9579575 ~ 9584773 (-)
sla1a LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725 coding upstream 349060 10374711 ~ 10378838 (-)
ndrg1a ndrg1a,LOC107710403,LOC107670279,LOC107724345,LOC107653857,LOC107556406 coding upstream 367073 10392724 ~ 10402213 (-)
si:rp71-45k5.2 LOC107724323,LOC107670287,LOC107574714 coding upstream 384426 10410077 ~ 10411619 (-)
psma2b si:rp71-45k5.4,psma2,LOC107724313,LOC103023870,LOC108425697,LOC108440756,LOC107686300,LOC107592434 coding upstream 388030 10413681 ~ 10416026 (-)
bmp8a LOC107724317,LOC107564489,LOC107556408,LOC107710496,LOC107670293,LOC107653863 coding upstream 393377 10419028 ~ 10426439 (-)
LOC122323594 NA non-coding downstream 66694 9942136 ~ 9945714 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding downstream 121885 9877452 ~ 9890523 (-)
LOC122323520 NA non-coding downstream 237945 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 364384 9647549 ~ 9648024 (-)
G131903 fam91a1,LOC107710596 non-coding downstream 367561 9603121 ~ 9644847 (-)
G132128 NA non-coding upstream 172922 10198573 ~ 10255238 (-)
LOC122323417 NA non-coding upstream 754813 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 1145375 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 1459152 11484803 ~ 11487989 (-)
G132241 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 non-coding upstream 1483066 11508717 ~ 11565630 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other downstream 28103 9929866 ~ 9984305 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 347949 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 703056 9308720 ~ 9309352 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other downstream 1225679 8724506 ~ 8786729 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other upstream 265621 10291272 ~ 10311936 (-)
ctnnal1 NA other upstream 289970 10315621 ~ 10362527 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 714723 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 1144619 11170270 ~ 11170913 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other upstream 1684272 11709923 ~ 11756438 (-)

Expression


Co-expression Network