ptdss1b (ptdss1b,LOC107591967,LOC107706225,LOC107696537)


Basic Information

Item Value
gene id ptdss1b
gene name ptdss1b,LOC107591967,LOC107706225,LOC107696537
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14377025 ~ 14386392 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218064.1
CTACTCGACTTCAGCGAAGTCCTGTCAGAAAAACCCGGCGCTGGAGGAGTGAAGTTTCGTCTGGACCCTTTGTCAGTTTGGATGAGACCAACCATGGCGCCCAGTCAGGGATCCAGGATGCTCAGTAAAGATGATGCGAATTATAAACTTCACTTTCGGATGATAAACGAGCAACAAGTGGAGGATATCACCATCGATTTCTTCTACAAACCGCACACCATTACTTTACTGACGTCCACTGTCGTCAGTATAATGTACTTTGCGTTTACGAGGGATGATGGTGATTCTGATAATAACCTTCGTGTGGGTCTGCTGCTGGTtggctctttctttcttgtcaTCAGCGTTCTTGCATTCCCCAACGgTCCTTTCACAAGACCGCATCCTGCTATATGGCGCATGGTTTTTGGTCTCAGTGTTCtttacttcctgttcctggtGTTCCTCATCTTCCTCAACTGGAATCAGGTGAAGACGCTGTTGTATTGGCTCGACCCCAATCTGCGTTATGCTACACGAGAAGCGGATGTCATGGAGTATGCAGTAAACTGTCACGTGATCACATGGGAACGCATCCTGAGTCACTTTGACATTTTTGcctttggtcatttttgggGCTGGGCAATGAAAGCTCTACTCATCCGAAGCTACGGCCTCTGCTGGTCTATTAGCATCACATGGGAGCTCACAGagTTGTTCTTCATGCACCTCCTGCCAAACTTTGCAGAGTGCTGGTGGGACCAAGTCATTCTTGACATCCTGTTGTGCAACGGAGGGGGCATTTGGCTTGGCATGACCGTGTGTCGCTTTTTAGAGATGCGTACCTATCACTGGGCCAGTATCAAggatATCCACACAACCACAGGCAAGCTGAAACGGGCTGCTTTGCAGTTCACTCCGGCCAGCTGGACGTATGTGCGCTGGTTTGACCCCAAATCCTCTTTTCAGAGGGTGGCTGGAATCTACCTCTTCATGATAGTATGGCAGCTCACAGAATTGAACACGTTTTTCCTGAAGCATATCTTCGTATTCCAGGCCTCTCATCCTCTCAGCTGGTGCCGGATCCTCTTCATTGGGATCATCACTGCCCCCACAGTGCGGCAATACTACGCATATCTAACAGACACCCAGTGCAAAAGAGTTGGAACACAGTGTTGGGTGTTTGGggCCATTGCTTTCCTGGAGGCCCTGGCTTGTATCAAATTCGGACAAGACTTGTtctctaaaacacaggttctCTATGTTGTCCTTTGGCTTTTATGTTTGGCTTTCATTACTTTTCTCTGTCTATATGGTATGGTTTGGTACGAGCAGAATTATGGAAAGAGGCTTAAGTACATTGCGGATTGTGACGACAGCATCATTACTGACATTCCTGAAACCGCCAAAGcAGAGAGAAACTCCAGCAGTAATTCCACTTCATCACGGAGAAGAAAAGGAGGatctggaaaaaacaaaacaatcaatgGAACAAGCGGCAAGAAGTGACCACCGCTAGAGACCGATGATCTCTCAATGGGCCAAAAGGGGTGAAAGAAGGAATCTGTGGTAAACGGTTAAAGAGAGGTAAACGGTTAGCTGGGTGACAGTGTGCAGACACAAGAACGGGACGCGTTCCAAACCACAAGCCTCTGTCGTACACtagttgtcatttttatagcaCTTGGAAGGAAACAATAATTTGTAGTATGCCGGGATTCTGGGAAATTACACAATGCGCACTTTCCAGTGGCACTGATGTGGTTTTTATATTGAGGAAGTTATCTGAGCCAGTGAATATTTTGTGATGAGCTTCCATGCTACCAGGCTtcaatttttgtaaaattatgggAGCGTTATTCAACTTCAGTATTGTTAATGCTGACCAAGCCTGCTCTTAAATGTTGCACATAGATCTCCGCTTGACCTGTAATCAGCGATTGTTTCGCTGACACATACCTATGCGTCGATCAGGGTAAGACATTTTATGCAACATTTCATTGTGAACATAAAAGCAAGCTCCGCGTTTGTGAGAAACCTTTAAGCACTTGTTTTAATGCACTATGATCTTTGCACAAATGTTCTATTATCACAACCGTTTTCATTCTTATACTTgctcttttaaatttaaaactgcAGAGTGGTTAAAGAAGTGGCTGCTTATGACCTTTTTATGAGCTGTtgatttacttaaatgtaatatgATTCAGCTTTTTTTGGCAACATGTAAAGGTGGTTTAGAAATGGTGACATCATCTGTATGatgtgtcttttgtttttgtacttctgttgtttttctttgtacGTTAACTttatacctgtgtgtgtgtgtgggcatgtGCATACATGATTTTAGATCaataatattttctgtgtgAGGCCTTTAAATTACTATGCATTTctatgtgcaattttttttgaaattgtaatttttgcagAACCTACATTCAGgattttgtgctgtttttgaaggcagtgatatttttttcccatgGGTTATTAATACTGAATAGTAGCATATGCATCTATTAAGGTACTATcacattttgtcttatttaattgtttttttatattctgtttttcaTGGACCAAATTGTTGAGCAATACCAAAGCTCTTAGttatacatatttttcccttggaaaaaaaactccaaaacttaAAATAGCTGTTAAGATTTCTAGTCATGAATTTTGTATGGAGCTGCAGTTCTGAAAGAACAAAGAGAATGCATAAAATGTGATGTCAAACTTGAATCTTCCACAGCAGTgttgtaacatttaattatttcttatgatttaatataataatcagGAGCAATGAGGTGTGACCAGATTTTTATCAATGTATGAATTAATGATATAAATTCTCACAGATGTGAACACCCCTTAACGGGATCTTCTTTTCACTTTCTGAATACACTTATACTGCATTGTTCattgaaaatgctaaataaaaaataaattgtactaACTTTAGTAATTATAGTAGAA

Function

symbol description
ptdss1b Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to act upstream of or within phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Lenz-Majewski hyperostotic dwarfism. Orthologous to human PTDSS1 (phosphatidylserine synthase 1).

NR:

description
phosphatidylserine synthase 1-like

GO: NA

KEGG:

id description
K08729 PTDSS1; phosphatidylserine synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218064.1 True 2970 mRNA 0.41 13 14377025 14386392

Neighbor

gene id symbol gene type direction distance location
nup153 nup153,LOC107654713,LOC107706220,LOC107754277 coding downstream 589 14363670 ~ 14376436 (-)
krit1 krit1,LOC107706222,LOC107591966,LOC107654714,LOC107754293,LOC107696538,LOC107592919 coding downstream 13756 14356731 ~ 14363269 (-)
eif3hb eif3h,eif3hb coding downstream 34716 14290541 ~ 14342309 (-)
trps1 trps1,LOC107706219,LOC107696539,LOC107754280,LOC107592043,LOC107562946 coding downstream 182284 14097094 ~ 14194741 (-)
csmd3b csmd3,si:ch211-233f16.1,LOC107706218 coding downstream 384706 13659839 ~ 13992319 (-)
LOC122324080 NA coding upstream 42511 14428903 ~ 14431551 (-)
ext1b extl1,ext1b,LOC107654722,LOC107754269,LOC107696533,LOC107592940,LOC101464589 coding upstream 109155 14495547 ~ 14561286 (-)
samd12 LOC107706238,LOC107591970,LOC107592942,LOC107654725 coding upstream 192570 14578962 ~ 14641514 (-)
abrab abrab,LOC107654682,LOC107706162,LOC107592087 coding upstream 257292 14643684 ~ 14646743 (-)
angpt1 angpt1,LOC107654726,LOC107706239,LOC107696520,LOC107754267 coding upstream 268884 14655276 ~ 14703548 (-)
LOC122324095 NA non-coding downstream 104307 14268267 ~ 14272718 (-)
G132852 NA non-coding downstream 815566 13561128 ~ 13561459 (-)
G132846 NA non-coding downstream 827274 13548740 ~ 13549751 (-)
G132837 NA non-coding downstream 848885 13527251 ~ 13528140 (-)
G132828 NA non-coding downstream 890836 13484281 ~ 13486189 (-)
G133016 rbm24a,LOC107696536,LOC107592929,LOC107706227,LOC107754275,LOC107654717,LOC107591968 non-coding upstream 17126 14403518 ~ 14428822 (-)
G133144 NA non-coding upstream 449060 14835452 ~ 14835861 (-)
G133143 NA non-coding upstream 450068 14836460 ~ 14837953 (-)
G133190 LOC107654743,LOC107706254 non-coding upstream 804413 15190805 ~ 15277403 (-)
G133226 NA non-coding upstream 997455 15383847 ~ 15384115 (-)
G132785 NA other downstream 868572 13507664 ~ 13508453 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other downstream 874655 13494830 ~ 13502370 (-)
G132733 NA other downstream 1091564 13284531 ~ 13285461 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other downstream 1347676 13027817 ~ 13029349 (-)
sem1 NA other downstream 1707810 12597774 ~ 12669215 (-)
G133132 NA other upstream 397796 14784188 ~ 14784423 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other upstream 501136 14887528 ~ 14891918 (-)
G133217 NA other upstream 980042 15366434 ~ 15369736 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other upstream 1258470 15644862 ~ 15648579 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other upstream 1273527 15659919 ~ 15660720 (-)

Expression


Co-expression Network