CI01000001_06519105_06525958


Basic Information

Item Value
gene id CI01000001_06519105_06525958
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6518633 ~ 6526120 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06519105_06525958.mRNA
CTATAAAAACTTTACTGAGGAAAAATTAAAATTTTCATCCACTGGATGTCACTGTTTCAAAATGTTGGATTTGGTTCCTCATAATGTCATAAATTTTTTTGTTACGTTATGGAATGTGTATTACCTTACGATAAAATTAATGAATGCATAAGGATAAGTTTATTAAACAAATGACAGACCAAACGATCTGATATTCAGCCGTACCACGCTGAAGTTATTGGTCTGACGTGTTTTCCTGTTTCTCATTTGTCACACTCTGTTACATCTTGTACATAAAGCTTTCTGGGTTGGTTACTCACTTTCCTGTCTGCACAGATACTCTGTCAGTGTGAGGCAGAAGGTGGATGCCACAAATGCTGACATGAAGCAGAGTTGGAATATTTCATGTTTTCATCAATTTGTAAGTCTATGAATTCAAATCGTACTGTTACTCGTCATTCATGACTCTTTAGCTGAAACTGAACGTCTCATCATGACTGTGTCCACACTGTGTTTTGATTTGGTATTTATACTATTTATAGCCTCCCAATACCAATGCCAAAACACAAGAGCACCCATGAAAGATGGAAGATGTTCAGCAGGATATTACAAAAAAGGACATGAGTGTGTGATGTGTAAGAGTGGTTTTTACACGAACACTTCAAATACATTGGCATTTTGTATTCCATGTAATAATTGTGATGAAATGGCTCATGAAGTAGAGAGTACCACCTGCAAATCAACACAGAACCGAGTCTGCGATTGTAAACCTGGGTTTTACAAAAGGGATAGTTTCTGTGTACCCTGTCACGATTGCCCAAACTGCGCAAAATGTTTGAACTGTAAAGAGAAATGTAACCGACAAACAACTATTACAACCACAGCAGTAGTTTGTGGGATGGGCTATTTTCAGGATGGTGGAAAATGCCAAAGCTGTGTAAAGTTTAGCTGCAAGAGTGACTCCTGTAAATCTTTTTGTACCACGGTTGAAACAGGTAGCCTATATCACAACATCCTAACATGCATACTTTACCATACCATACAAGAAAGAAACGCCTCAGTCTGCAATGAAACCAGTATCAAAACTTTACCAGTGACCAATTACCCACACAGCGTCTTCAGTGGAGACTTACAGAGCATCATGGCTCCCCTGATAGCAAATGGAAACCCAAAATTAATGCAGGTGTTGCAGAAGGAGTCCTGGCCAGCACCAGTGCTCTACACCATCATAAGAGAGATTCCCGTGACACGCTGGAAGGAATTTCTGCGACTGCTTTCTGTGTCAGATGATCAGATGGAACGAATCGAACTGGAGGCAGGCCCATCCTATCTAGAAAAACAGTACCTGATGCTACGTCTTTGGAGCCAGAGCAGTGGCGCAAAGCTGGAGAATATCTACTCAACATTACACTACATGAACCTATCAGGTTGCGCCCAGGAACTGCAAGAGAAGCTAGAACAACTGCAGGCATGCATGCAATCTGCCTCATCTTGACGCCATCTCCTCATGTGTGAGGGCTGCAGTTGAATTTTGCAATCATTTACAGGGAACTCTGCACAGCAGATGTTCTGTCTTCTGTACTTTTAACAGGAAACGCTCAGTCATGGATAAAAATATTCATGTTCATGAATTGTTTTATTTAAGCATAATGTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06519105_06525958.mRNA True 1636 mRNA 0.40 8 6518633 6526120

Neighbor

gene id symbol gene type direction distance location
CI01000001_06484769_06502296 CCDC30 coding upstream 14484 6484769 ~ 6504149 (+)
CI01000001_06474891_06479887 USP21 coding upstream 38608 6474891 ~ 6480025 (+)
CI01000001_06458769_06470107 ARHGEF3L coding upstream 48138 6458769 ~ 6470495 (+)
CI01000001_06442969_06455699 UBA1 coding upstream 62774 6442969 ~ 6455859 (+)
CI01000001_06420606_06430104 CAMKVL coding upstream 88500 6420606 ~ 6430133 (+)
CI01000001_06531852_06539325 TTC34 coding downstream 5732 6531852 ~ 6539493 (+)
CI01000001_06541966_06547403 NA coding downstream 15846 6541966 ~ 6547745 (+)
CI01000001_06564886_06568295 NA coding downstream 38766 6564886 ~ 6568295 (+)
CI01000001_06583486_06641365 PAX7, PAX7B, PAX7A coding downstream 57366 6583486 ~ 6641365 (+)
CI01000001_06700913_06706131 NA coding downstream 174691 6700811 ~ 6706423 (+)
G16257 NA non-coding upstream 3235 6515121 ~ 6515398 (+)
G16247 NA non-coding upstream 85305 6433084 ~ 6433328 (+)
G16212 NA non-coding upstream 236081 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 291488 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 309853 6208552 ~ 6208780 (+)
G16284 NA non-coding downstream 146062 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 197689 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 274048 6800168 ~ 6800381 (+)
CI01000001_06893068_06917387 IFFO2A non-coding downstream 389667 6893068 ~ 6917660 (+)
G16937 NA non-coding downstream 410022 6936142 ~ 6946151 (+)
G15995 NA other upstream 803682 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1228677 5279837 ~ 5287698 (+)
G15794 NA other upstream 1453929 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2897182 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4847629 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1006452 7531541 ~ 7540586 (+)
G17234 NA other downstream 1506004 8032124 ~ 8032483 (+)
G17353 NA other downstream 2689902 9216022 ~ 9228859 (+)
G17354 NA other downstream 2708343 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2892208 9435836 ~ 9436373 (+)

Expression


Co-expression Network