necap1 (necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381)


Basic Information

Item Value
gene id necap1
gene name necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17255045 ~ 17259133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218073.1
CTTGCCTGAGGCATCGCTGACGTCACTGACGCTCCAGTGCTCGTGGAAGCGGCTGGCCCGCAATAACAAATTGGATGAAGACAGAAATATTACTCGCATCCATTGAAATCAGTTCAAGATGGCGTCCGAGGGCGAATACGAGTCGATTCTGTGCGTGAAACCAGATGTAAATGTTTACCGCATCCCGCCGCGGGCGTCGAATCGCGGATACAGGGCGGCTGACTGGAAGCTAGACACTCCTGACTGGACAGGCCGTATGCGCATTACAGCAAAGGGGAAGGTGGCTTATATCAAACTGGAGGACAAAGTCTCAGGTGAGCTGTTTGCTCAAGCTCCAGTAAAGGAATACCCTGGCATTGCAGTGGAGACAGTCAGTGATTCCAGTCGCTATTTTGTTCTCCGAATACAGGATGACAACGGTCGCAGTGCATTCATTGGCGTTGGGTTTGGGGACAGAGGGGATGCCTTTGACTTTAATGTTGCCCTGCAGGATCATTTCAAGTGGGTGAAACAGGAAAACGAAATCAAAAGTTCTCAGGCTGCAGACTCAGGACCCAAACTGGATCTAGGCTTCAAAGAGGGACAGACCATCACACTGAATATCGGgCAAGGTAAAAAGAGGGACAAGCCCCGCCCTCAGAGCTCAGGGGGCTTGGGGCTCCTCCCTCCACCTCCAGGAGGAAAGATAGCTCCTCCTCCTTCGTCCAATCACAACACAGTACAGCCATCAGGGGGAGCAGAAACGGGATGTTTATTAGAACTGGACAGCAGTAACTCTAATACAGTGGTTCAGTCAAACCCCAGCTCTGACCTTTGGGGTGACTTCTCCAGCTCTGCAAGCTCCGTTGCTCCTCCAGCACCACGCCAAGAACCCTCTTCCGGGAACTGGGTCCAGTTCTGAAAAAGTTTTATCCTCCTCCATTCCATCATTGTTCCCATTCCTCCATCAAAACTACTGCAATTAAAAGAAACTGCATAATTGTATGGAAAACTAGAGGCAGGCTGTATGTCATGCTGCTAATCATAGCAGAGCACAGAGGTGAGAAATAGGCTATTGAGAATTCTGTTAGAATCAACCAAATGAAATTATGGAAAAGATTGTATAAAAGAGAGGAACATCCCATGGGTGTTATATGTAAAACTTTATGgtaatgttttgaattattgtTTCAGTATCTTTGCATTTGTCCACAAGGTGTTGGATGTGTCCATTTTGTTGTCATGACCTGTATATGTTCGTCTTAGGTTTCGGAGGATGTGAATATACGTGTttgagtgtttaaaaaaaaaatggcggaGATTTTGTTTGAAAGCGTAGAATTGAATTGAGGCCTGGATATGTTAAGAGCTTAACATCTTGTATATCATAAGAATATATAAAAgctgtacagtataaatattcaaaacaatacTGACCGAAGGCCACAATGTAGAAAATATATGTCCCTCAAACAAAGGGATTATGTCTAGATATCATTACATATCCATATTGTCATTTACTTGACTAACGGAGTCATTTACgtgttaaacaaaaataaaatatacaaaagagCTACAACA

Function

symbol description
necap1 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be part of clathrin vesicle coat. Is expressed in central nervous system and epiphysis. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 21. Orthologous to human NECAP1 (NECAP endocytosis associated 1).

NR:

description
PREDICTED: adaptin ear-binding coat-associated protein 1

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20069 NECAP1_2; adaptin ear-binding coat-associated protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218073.1 True 1560 mRNA 0.44 8 17255045 17259133

Neighbor

gene id symbol gene type direction distance location
LOC122323367 si:ch211-171h4.6,LOC107724079,LOC107656587,LOC107739584,LOC107693286,LOC107599572 coding downstream 27552 17223716 ~ 17227493 (-)
LOC122323323 LOC107656565,LOC107739585,LOC107656564,LOC107739586,LOC107589464,LOC107599573,LOC107589461 coding downstream 42241 17211462 ~ 17212804 (-)
LOC122324047 LOC107739586,LOC107656565 coding downstream 48765 17204877 ~ 17206280 (-)
usf2 usf2,LOC107739527,LOC107724110,LOC107656615,LOC107693382 coding downstream 58594 17187177 ~ 17196451 (-)
si:dkey-211g8.4 NA coding downstream 69324 17183537 ~ 17185721 (-)
rcvrn3 rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570 coding upstream 15584 17274717 ~ 17280868 (-)
cacng6a cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581 coding upstream 225813 17484946 ~ 17492735 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding upstream 267279 17526412 ~ 17534108 (-)
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding upstream 295419 17554552 ~ 17577989 (-)
si:ch211-288g17.3 LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507 coding upstream 348820 17607953 ~ 17612267 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding downstream 3741 17248684 ~ 17251304 (-)
LOC122323277 NA non-coding downstream 86937 17164694 ~ 17168108 (-)
G133902 NA non-coding downstream 90930 17163832 ~ 17164115 (-)
G133861 slc9a3.2,LOC107656591,LOC107739626,LOC107693290,LOC107748744,LOC107599577,LOC107565571 non-coding downstream 123050 17127666 ~ 17131995 (-)
G133887 NA non-coding downstream 198178 17056425 ~ 17056867 (-)
G133920 NA non-coding upstream 1577 17260710 ~ 17261499 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding upstream 6531 17265664 ~ 17268048 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding upstream 28534 17287667 ~ 17289380 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding upstream 66198 17325331 ~ 17345216 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding upstream 330863 17589996 ~ 17594324 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 36255 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 354269 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 356444 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 357902 16896108 ~ 16897143 (-)
LOC122324112 NA other downstream 362464 16891692 ~ 16892581 (-)
G133949 NA other upstream 24199 17283332 ~ 17284744 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other upstream 71564 17330697 ~ 17334234 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 354313 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 670556 17929689 ~ 17935436 (-)
G134318 NA other upstream 751749 18010882 ~ 18011399 (-)

Expression


Co-expression Network