pithd1 (pithd1,LOC107654704,LOC107696572)


Basic Information

Item Value
gene id pithd1
gene name pithd1,LOC107654704,LOC107696572
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13525347 ~ 13527918 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218078.1
AATCACGTCCCACGTTTAGTATTTGCGTGTTGTCTACTTTCCCACTTCTGCCACCTGTGTAACTGTACGGTTTTAGCTTATGTCACAGGAGTCGCTGCCGGGGCTGTCGTACGTATCTCTCGGGTGAGCTTAGTTGTAGGTGTTTCGGTACTTTTTCGGTTCACGCCATGTCTGGACACGGCCACGGCCACGGCCACGGCGGCGGACACGGCCACGGCTGTTGTGAATGCGATCACGAGCCCGCAGAGCGAGGGGTGGAATATGAGCTCTACAGACGCATCGATATCGAGAAGCTTCAGTGTTTGAATGAGAGCCGAGACGGAGACGGTAAACTGGTGTTCAAGCCTTGGGATCAACGCGCTGACAGGGAAAAGtttgtcGAAAGCGATGCTGACGAAGAGCTTCTGTTCAATATACCGTTTACAGGTAGCGTGAAGCTGAAAGGGATCATTATTTCTGGAGAAGATGATGAGTCACACCCAGCTGAAATGAGACTGTACAAGAACATCCCCCAAATGTCATTCGATGATACAAGCAGAGAGCCAGAGCAAGCGTTTCGTCTAAACAGGGATCCGCTCGCTGAGCTTGAGTATCCAACCAAgaTTGCCAGGTTCTCCAACGTGCAGCACTTATCAATCCACATATCTCGAAACTTTGGGGCAGAATCCACTCGTGTGTATTACATTGGTCTGCGGGGAGAGTACACCAGAGgctCATAGGCATGAAGTCACAATCTGCAACTACGAAGCAGCAGCCAACCCAGCAGATCACAAAGTGGAGACCATTACACCCCAAACACAGTTCATATCATGACAAATGGGGGAGAGGGAATCTCACGTGTGCTGTGTGAAACTATAAAAGTGTGCATGAGTTTTGATAACGGTGAGACGAAGTGAGAGGGCCTATGCGTTCTTTGACGTATTCGACAGTGATTTCTTCACCAGGGTTTGTTCAGCTGCAATTCTGCTAATGTGCCAATAAACCTTAGGCTATATAAGCGTAATCACTTAATATATGCTTATGTCAAATAAAACGTGTGTGCTTCAACAAACAGAA
>XM_043218079.1
GTCCAATCACGTCCCACGTTTAGTATTTGCGTGTTGTCTACTTTCCCACTTCTGCCACCTGTGTAACTGTACGGTTTTAGCTTATGTCACAGGAGTCGCTGCCGGGGCTGTCGTACGTATCTCTCGGGTGAGCTTAGTTGTAGGTGTTTCGGTACTTTTTCGGTTCACGCCATGTCTGGACACGGCCACGGCCACGGCCACGGCGGCGGACACGGCCACGGCTGTTGTGAATGCGATCACGAGCCCGCAGAGCGAGGGGTGGAATATGAGCTCTACAGACGCATCGATATCGAGAAGCTTCAGTGTTTGAATGAGAGCCGAGACGGAGACGGTAAACTGGTGTTCAAGCCTTGGGATCAACGCGCTGACAGGGAAAAGtttgtcGAAAGCGATGCTGACGAAGAGCTTCTGTTCAATATACCGTTTACAGGTAGCGTGAAGCTGAAAGGGATCATTATTTCTGGAGAAGATGATGAGTCACACCCAGCTGAAATGAGACTGTACAAGAACATCCCCCAAATGTCATTCGATGATACAAGCAGAGAGCCAGAGCAAGCGTTTCGTCTAAACAGGGATCCGCTCGCTGAGCTTGAGTATCCAACCAAgaTTGCCAGGTTCTCCAACGTGCAGCACTTATCAATCCACATATCTCGAAACTTTGGGGCAGAATCCACTCGTGTGTATTACATTGGTCTGCGGGGAGAGTACACCAGAGGTCAcatctttttctctctctttcaggctCATAGGCATGAAGTCACAATCTGCAACTACGAAGCAGCAGCCAACCCAGCAGATCACAAAGTGGAGACCATTACACCCCAAACACAGTTCATATCATGACAAATGGGGGAGAGGGAATCTCACGTGTGCTGTGTGAAACTATAAAAGTGTGCATGAGTTTTGATAACGGTGAGACGAAGTGAGAGGGCCTATGCGTTCTTTGACGTATTCGACAGTGATTTCTTCACCAGGGTTTGTTCAGCTGCAATTCTGCTAATGTGCCAATAAACCTTAGGCTATATAAGCGTAATCACTTAATATATGCTTATGTCAAATAAAACGTGTGTGCTTCAACAAACAGAA

Function

symbol description
pithd1 Predicted to be involved in positive regulation of megakaryocyte differentiation and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PITHD1 (PITH domain containing 1).

NR:

description
PITH domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218078.1 False 1056 mRNA 0.48 6 13525351 13527918
XM_043218079.1 True 1086 mRNA 0.48 6 13525347 13527918

Neighbor

gene id symbol gene type direction distance location
eloa tceb3,zgc:55573,LOC107589441,LOC107742827,LOC107706212,LOC107654666 coding upstream 415 13517125 ~ 13524932 (+)
rpl11 rpl11 coding upstream 15868 13507041 ~ 13509479 (+)
LOC122323294 LOC107654670,LOC107589446,LOC107696517,LOC107706136,LOC107591657 coding upstream 18935 13503313 ~ 13506412 (+)
LOC122323414 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC107591637,LOC107696561,LOC107742829,LOC108426655 coding upstream 23149 13498275 ~ 13502198 (+)
LOC122323413 eef1a1l1,LOC107742828,LOC107706208,LOC107654700,LOC107589443,LOC100526699,LOC103044018 coding upstream 27283 13494814 ~ 13498064 (+)
lypla2 lypla2,LOC107654706,LOC107706215,LOC107696570,LOC107742825 coding downstream 674 13528592 ~ 13534978 (+)
ankib1a LOC107706216,LOC107654707,LOC107742824,LOC107696581,LOC107589494 coding downstream 8219 13536137 ~ 13554834 (+)
LOC122323661 LOC107654672,LOC107706155,LOC107592076,LOC107742821,LOC107696516,LOC107696575 coding downstream 99319 13627237 ~ 13638088 (+)
lrrc14b lrrc14b,LOC107706156,LOC107654673,LOC107742820,LOC107696555 coding downstream 110294 13638212 ~ 13642069 (+)
utp23 utp23 coding downstream 814691 14342609 ~ 14343877 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding upstream 11451 13513022 ~ 13513896 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding upstream 12376 13511608 ~ 13512971 (+)
G132549 NA non-coding upstream 398730 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 401381 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 422422 13101949 ~ 13102925 (+)
G132773 NA non-coding downstream 27093 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 33249 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 318864 13846782 ~ 13848115 (+)
G132910 NA non-coding downstream 569358 14097276 ~ 14106261 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding downstream 640177 14168095 ~ 14168484 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 188598 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 499321 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 1100269 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1412450 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 2001466 11522229 ~ 11523881 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1259626 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1306683 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1550536 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 1780809 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 1827690 15355608 ~ 15361845 (+)

Expression


Co-expression Network