rpl11 (rpl11)


Basic Information

Item Value
gene id rpl11
gene name rpl11
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13507041 ~ 13509479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218081.1
CGGAAGTATATCGTCCTCTTCTTAGTGATCAAACATGGCGGACCAGGGTGAGAAGAAGGAGAACCCCATGAGGGAGCTGCGCATCCGCAAGCTGTGCCTGAACATCTGTGTGGGTGAGAGCGGTGACAGACTGACCCGTGCTGCTAAGGTGCTGGAGCAGCTGACAGGCCAGACTCCTGTCTTCTCCAAGGCCCGCTACACTGTGCGATCCTTCGGTATCCGTAGAAATGAAAAGATTGCAGTCCACTGCACTGTCCGTGGAGCCAAGGCTGAGGAAATCTTGGAGAAGGGACTGAAGgTGCGTGAGTACGAGTTGAGAAAGAACAACTTCTCAGACACAGGAAACTTTGGCTTTGGTATCCAGGAACACATTGATTTGGGCATCAAGTACGACCCAAGCATTGGAATCTACGGCTTGGACTTTTATGTGGTTCTTGGCAGACCTGGTTTCAGCATTGCTGACAAAAAAAGGAAGCAGGGCCGCATCGGCTTCAAGCACCGTATCCGCAAAGAGGAGGCAATGCGCTGGTTCCAACAGAAGtatgatGGCATCATCCTCCCTGGCAAGTAAAGGACCACCGTTTTTCCCAAtttgtaacaaacaaataaaagaaaagccCAAATGTGA

Function

symbol description
rpl11 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including erythrocyte development; glucose homeostasis; and hemoglobin biosynthetic process. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11).

NR:

description
PREDICTED: 60S ribosomal protein L11

GO:

id name namespace
GO:0034504 protein localization to nucleus biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042593 glucose homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02868 RP-L11e, RPL11; large subunit ribosomal protein L11e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218081.1 True 628 mRNA 0.50 6 13507041 13509479

Neighbor

gene id symbol gene type direction distance location
LOC122323294 LOC107654670,LOC107589446,LOC107696517,LOC107706136,LOC107591657 coding upstream 629 13503313 ~ 13506412 (+)
LOC122323414 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC107591637,LOC107696561,LOC107742829,LOC108426655 coding upstream 4843 13498275 ~ 13502198 (+)
LOC122323413 eef1a1l1,LOC107742828,LOC107706208,LOC107654700,LOC107589443,LOC100526699,LOC103044018 coding upstream 8977 13494814 ~ 13498064 (+)
si:ch1073-513e17.1 si:ch1073-513e17.1,LOC107697040,LOC107706204,LOC107742862,LOC107589448 coding upstream 16462 13482727 ~ 13490579 (+)
cap1 cap1,LOC107706206,LOC107697048,LOC107742832,LOC107696560 coding upstream 27722 13470196 ~ 13479319 (+)
eloa tceb3,zgc:55573,LOC107589441,LOC107742827,LOC107706212,LOC107654666 coding downstream 7646 13517125 ~ 13524932 (+)
pithd1 pithd1,LOC107654704,LOC107696572 coding downstream 15868 13525347 ~ 13527918 (+)
lypla2 lypla2,LOC107654706,LOC107706215,LOC107696570,LOC107742825 coding downstream 19113 13528592 ~ 13534978 (+)
ankib1a LOC107706216,LOC107654707,LOC107742824,LOC107696581,LOC107589494 coding downstream 26658 13536137 ~ 13554834 (+)
LOC122323661 LOC107654672,LOC107706155,LOC107592076,LOC107742821,LOC107696516,LOC107696575 coding downstream 117758 13627237 ~ 13638088 (+)
G132549 NA non-coding upstream 380424 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 383075 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 404116 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 641446 12786644 ~ 12865595 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 2129 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 3543 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 45532 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 51688 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 337303 13846782 ~ 13848115 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 170292 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 481015 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 1081963 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1394144 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1983160 11522229 ~ 11523881 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1278065 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1325122 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1568975 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 1799248 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 1846129 15355608 ~ 15361845 (+)

Expression


Co-expression Network