si:ch211-288g17.3 (LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507)


Basic Information

Item Value
gene id si:ch211-288g17.3
gene name LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17607953 ~ 17612267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218092.1
CGGACCGCCGACTCCGAGCGGGAGACGAAGAAGAATTGGCATTGCCTTTCAAATAATCACAGTCGCCCGCCCACTGTCCGATGCTGTTTGCATCGAAAATATTGTCGAATGCATGAAAAAGATCATCTCTGCTGTTGTGAAAGCGCTTTGCGAGTAAGATTCTCAGCACCAAGCAGACGAGTGTGGCACTGATACGCCTGAAGTTGTGAGCGAGAAGCTGCAACGTGATGGAGGTTGAGAATAAAGAAGGAACCGAGAGCCCTCTGCCCAACGGCAGCACCCATCCACCCAAACGTGGACGAGGCAGACCACGAGGGTCACTCAATAAGAAGTTCCCTACCGAGAAAGCGCCGACACACAACGCCAGGCCATCCAAAAAGGTGGACTTCTTTTCTCCCGATATAGTCATAAAGACCAAGGTGAAGAAACGCGGTCGACCAAAGAAGATAAAAATGCCCGGCAGGCCGAGAAAGATCCCTCTAACGCCTGAGGAAGAATCAGAAAGACTTCAAAGGTTGAATTTACAGCGCAAGAGAAGACTGTCAAAGCCGCTCGGAAGACCACGCATTCATCCCGTCGCCGAAGGTCCCAAGGTAAAAAGAGGAAGAGGCAGACCGCGCAAGTACGCTGCTAAATCTGGTTCGCAAGGTGGAGCCAAACAAGCTGGTGTTGACATCAGCCTTGATGCCGCCAATGGTCCTCCACGAAAGAGAGGAAGGCCGGCGGGCACTTTGAAGAGAAAGAGGGGTCGGCCCGCAGGTTCTACCAAGATTGCCAGGGCCTCAGACGGAACCCCAAAAAGGAGAGGCCGCCCTCCAGGCTCTCCCAACAAAGTGAAGAAGGTTCAGCGGGCTGAAGGATCTCCTCGCAAGAGGGGCCGTCCCCCAGGCTCTGGCACCAAACTGAAGGTCATTCAACGAAACCCAGACGGAACACCTCGTAAGAGAGGCCGACCTCCAGGTTCCGGCCAAAAAGTTAAGATTGTCGAAAAGAAAGTCGGTGACACTCCCCGAAAGAGAGGCCGGCCTCCAGGTACGGGAAAAGTCAAGGTTCAAGCCGCAGAAGGTGGGGAGACGGGAGGTGAGAACGCAGATGACGCCGCTCCGCGCCGTAAGAGAGGACGTCCGAGCAAAGTCAGACTCGCAGTCGTGCTTGAAAAACTCCCCGCGGCATCGGCacaagaagaggaagaggagaccGACGCACCCTCTCCCAAACAATCCCGCACCTCGGATGATTCGTCGCAAAATCCAAACGAGGATGACGAAGACACCAGAGCGAGCGAGAACGACGCAGACCCAGAAGACGAAGACGACGAAGAAGACGCCATCGATTGCTCAAAAGTCAACAACACAAGCGAGAACGAGATGGTGGGCaaattcaaaaaaaagaaatgaaaagataaGGGGCTTCATTGAAAATTGGTGGGTATATTTTTCGAAGGGTTTTAATAGGCTATgtcaataatttttttgccttttttttaatctgacaaaGTGTGCTTTTGATGTTGCCTGCCATGCcagactgtattttttttttctttctcttttattttgaagctcaTTAACCGAAATGTTTGCTCACAGTCTGATTGAGCgcaattgttttttctttgttgttttttttttttttttttgcatggggaaaaaaaagtgtctgcATAATAATTTGAAGCATGCAAACTCGAAGGACAAGTATGTAGCCTGTTAACATCGTGGGATCCAAAAAGATGATGCACAATTAACGGTTCCATTGAAAACGTTACCATGCTAAGCACACCTTATTTGTTACCAATGGCTTGTGCCAATAATTTCAGAGCAACTACCAAACCAGACTGTTTCAGATGTAGTATCCTCACACCTGTGCAGTAGTCTGTGTGCGCAGGATTTTAAATTACTCGAGGctaatttttaaaattgacATCGCCCGGATGGTTTTTAGTCGATGTATTAGTGGCTGTGAAAATCTGCAGCTTTTTGAGGATGACGGTTAAGTGcgtttttgctgtagttttatttctttttaccaTCGTCTGTTCATTCATGTTTCAACTCTGTAAAATCAGTCCTGCCGAGTTCAGTGTTTTATAGTGAAACAGTCTTATTTTATGCTTCGTATCATCAGATCTTTGTCTGATAGTTCGGTCATATATAGGTGTTGAGTGCTTAGTTTACGACAACCCCtcatttttgctaaaatattgTGATTGCTTCATTTTTAAGACATGCCgttgtttttcaaaatgtgaataCATACAAAATTCTGCTTCGACAATAGGCTCATGGGTCCcggtttttaattttcatatcatttatggctttttatatacatttcttgtTGCTCCTGtctttttgaactttttctCATGTAACcgtttgttttttctctttgattTGCTTAGTTTGTGTAAAAGCTTAGAGTTCTCTTGCTATAAACCGTAGATCTTGTCTTGATTAATTTTCATGTATGATTTAGTTTTAATCTGTATGTACCAGTAGATGCCGAAAACAGATTGTTTTAGCCGAGATCTTGCATCTAGAAATGTTCTTtcatgttaataaaacagttaCTGTTAAGACATGATGGTTCAATAGGCATTAAGTGCATTTCATGTACGAGCTTTATAATTAGGTTACTCATTTGTGCTATAGtgagaaacatttctgtatCACCGCTTTGTATGATTCATTTCACTTTGTGATTTGGATGAGCATTGTTGCTGATTAATAACCGATTAAATCATACCATATTCACCAA
>XM_043218093.1
GACTCCGAGCGGGAGACGAAGAAGAATTGGCATTGCCTTTCAAATAATCACAGTCGCCCGCCCACTGTCCGATGCTGTTTGCATCGAAAATATTGTCGAATGCATGAAAAAGATCATCTCTGCTGTTGTGAAAGCGCTTTGCGAATTCTCAGCACCAAGCAGACGAGTGTGGCACTGATACGCCTGAAGTTGTGAGCGAGAAGCTGCAACGTGATGGAGGTTGAGAATAAAGAAGGAACCGAGAGCCCTCTGCCCAACGGCAGCACCCATCCACCCAAACGTGGACGAGGCAGACCACGAGGGTCACTCAATAAGAAGTTCCCTACCGAGAAAGCGCCGACACACAACGCCAGGCCATCCAAAAAGGTGGACTTCTTTTCTCCCGATATAGTCATAAAGACCAAGGTGAAGAAACGCGGTCGACCAAAGAAGATAAAAATGCCCGGCAGGCCGAGAAAGATCCCTCTAACGCCTGAGGAAGAATCAGAAAGACTTCAAAGGTTGAATTTACAGCGCAAGAGAAGACTGTCAAAGCCGCTCGGAAGACCACGCATTCATCCCGTCGCCGAAGGTCCCAAGGTAAAAAGAGGAAGAGGCAGACCGCGCAAGTACGCTGCTAAATCTGGTTCGCAAGGTGGAGCCAAACAAGCTGGTGTTGACATCAGCCTTGATGCCGCCAATGGTCCTCCACGAAAGAGAGGAAGGCCGGCGGGCACTTTGAAGAGAAAGAGGGGTCGGCCCGCAGGTTCTACCAAGATTGCCAGGGCCTCAGACGGAACCCCAAAAAGGAGAGGCCGCCCTCCAGGCTCTCCCAACAAAGTGAAGAAGGTTCAGCGGGCTGAAGGATCTCCTCGCAAGAGGGGCCGTCCCCCAGGCTCTGGCACCAAACTGAAGGTCATTCAACGAAACCCAGACGGAACACCTCGTAAGAGAGGCCGACCTCCAGGTTCCGGCCAAAAAGTTAAGATTGTCGAAAAGAAAGTCGGTGACACTCCCCGAAAGAGAGGCCGGCCTCCAGGTACGGGAAAAGTCAAGGTTCAAGCCGCAGAAGGTGGGGAGACGGGAGGTGAGAACGCAGATGACGCCGCTCCGCGCCGTAAGAGAGGACGTCCGAGCAAAGTCAGACTCGCAGTCGTGCTTGAAAAACTCCCCGCGGCATCGGCacaagaagaggaagaggagaccGACGCACCCTCTCCCAAACAATCCCGCACCTCGGATGATTCGTCGCAAAATCCAAACGAGGATGACGAAGACACCAGAGCGAGCGAGAACGACGCAGACCCAGAAGACGAAGACGACGAAGAAGACGCCATCGATTGCTCAAAAGTCAACAACACAAGCGAGAACGAGATGGTGGGCaaattcaaaaaaaagaaatgaaaagataaGGGGCTTCATTGAAAATTGGTGGGTATATTTTTCGAAGGGTTTTAATAGGCTATgtcaataatttttttgccttttttttaatctgacaaaGTGTGCTTTTGATGTTGCCTGCCATGCcagactgtattttttttttctttctcttttattttgaagctcaTTAACCGAAATGTTTGCTCACAGTCTGATTGAGCgcaattgttttttctttgttgttttttttttttttttttgcatggggaaaaaaaagtgtctgcATAATAATTTGAAGCATGCAAACTCGAAGGACAAGTATGTAGCCTGTTAACATCGTGGGATCCAAAAAGATGATGCACAATTAACGGTTCCATTGAAAACGTTACCATGCTAAGCACACCTTATTTGTTACCAATGGCTTGTGCCAATAATTTCAGAGCAACTACCAAACCAGACTGTTTCAGATGTAGTATCCTCACACCTGTGCAGTAGTCTGTGTGCGCAGGATTTTAAATTACTCGAGGctaatttttaaaattgacATCGCCCGGATGGTTTTTAGTCGATGTATTAGTGGCTGTGAAAATCTGCAGCTTTTTGAGGATGACGGTTAAGTGcgtttttgctgtagttttatttctttttaccaTCGTCTGTTCATTCATGTTTCAACTCTGTAAAATCAGTCCTGCCGAGTTCAGTGTTTTATAGTGAAACAGTCTTATTTTATGCTTCGTATCATCAGATCTTTGTCTGATAGTTCGGTCATATATAGGTGTTGAGTGCTTAGTTTACGACAACCCCtcatttttgctaaaatattgTGATTGCTTCATTTTTAAGACATGCCgttgtttttcaaaatgtgaataCATACAAAATTCTGCTTCGACAATAGGCTCATGGGTCCcggtttttaattttcatatcatttatggctttttatatacatttcttgtTGCTCCTGtctttttgaactttttctCATGTAACcgtttgttttttctctttgattTGCTTAGTTTGTGTAAAAGCTTAGAGTTCTCTTGCTATAAACCGTAGATCTTGTCTTGATTAATTTTCATGTATGATTTAGTTTTAATCTGTATGTACCAGTAGATGCCGAAAACAGATTGTTTTAGCCGAGATCTTGCATCTAGAAATGTTCTTtcatgttaataaaacagttaCTGTTAAGACATGATGGTTCAATAGGCATTAAGTGCATTTCATGTACGAGCTTTATAATTAGGTTACTCATTTGTGCTATAGtgagaaacatttctgtatCACCGCTTTGTATGATTCATTTCACTTTGTGATTTGGATGAGCATTGTTGCTGATTAATAACCGATTAAATCATACCATATTCACCAA
>XM_043218094.1
GGGTTAGCAGGCAGCTAACAAAAATCGCCAGTGCCTCACATTTTACCTGGAACTACAAAAGCTCGCGGGCTTCACTGTACATGATGGCAGCCAGTCCGCAGCATCCGCTCTTTTATGCGTTTTACACGGCGTGAGATCATTCTCAGCACCAAGCAGACGAGTGTGGCACTGATACGCCTGAAGTTGTGAGCGAGAAGCTGCAACGTGATGGAGGTTGAGAATAAAGAAGGAACCGAGAGCCCTCTGCCCAACGGCAGCACCCATCCACCCAAACGTGGACGAGGCAGACCACGAGGGTCACTCAATAAGAAGTTCCCTACCGAGAAAGCGCCGACACACAACGCCAGGCCATCCAAAAAGGTGGACTTCTTTTCTCCCGATATAGTCATAAAGACCAAGGTGAAGAAACGCGGTCGACCAAAGAAGATAAAAATGCCCGGCAGGCCGAGAAAGATCCCTCTAACGCCTGAGGAAGAATCAGAAAGACTTCAAAGGTTGAATTTACAGCGCAAGAGAAGACTGTCAAAGCCGCTCGGAAGACCACGCATTCATCCCGTCGCCGAAGGTCCCAAGGTAAAAAGAGGAAGAGGCAGACCGCGCAAGTACGCTGCTAAATCTGGTTCGCAAGGTGGAGCCAAACAAGCTGGTGTTGACATCAGCCTTGATGCCGCCAATGGTCCTCCACGAAAGAGAGGAAGGCCGGCGGGCACTTTGAAGAGAAAGAGGGGTCGGCCCGCAGGTTCTACCAAGATTGCCAGGGCCTCAGACGGAACCCCAAAAAGGAGAGGCCGCCCTCCAGGCTCTCCCAACAAAGTGAAGAAGGTTCAGCGGGCTGAAGGATCTCCTCGCAAGAGGGGCCGTCCCCCAGGCTCTGGCACCAAACTGAAGGTCATTCAACGAAACCCAGACGGAACACCTCGTAAGAGAGGCCGACCTCCAGGTTCCGGCCAAAAAGTTAAGATTGTCGAAAAGAAAGTCGGTGACACTCCCCGAAAGAGAGGCCGGCCTCCAGGTACGGGAAAAGTCAAGGTTCAAGCCGCAGAAGGTGGGGAGACGGGAGGTGAGAACGCAGATGACGCCGCTCCGCGCCGTAAGAGAGGACGTCCGAGCAAAGTCAGACTCGCAGTCGTGCTTGAAAAACTCCCCGCGGCATCGGCacaagaagaggaagaggagaccGACGCACCCTCTCCCAAACAATCCCGCACCTCGGATGATTCGTCGCAAAATCCAAACGAGGATGACGAAGACACCAGAGCGAGCGAGAACGACGCAGACCCAGAAGACGAAGACGACGAAGAAGACGCCATCGATTGCTCAAAAGTCAACAACACAAGCGAGAACGAGATGGTGGGCaaattcaaaaaaaagaaatgaaaagataaGGGGCTTCATTGAAAATTGGTGGGTATATTTTTCGAAGGGTTTTAATAGGCTATgtcaataatttttttgccttttttttaatctgacaaaGTGTGCTTTTGATGTTGCCTGCCATGCcagactgtattttttttttctttctcttttattttgaagctcaTTAACCGAAATGTTTGCTCACAGTCTGATTGAGCgcaattgttttttctttgttgttttttttttttttttttgcatggggaaaaaaaagtgtctgcATAATAATTTGAAGCATGCAAACTCGAAGGACAAGTATGTAGCCTGTTAACATCGTGGGATCCAAAAAGATGATGCACAATTAACGGTTCCATTGAAAACGTTACCATGCTAAGCACACCTTATTTGTTACCAATGGCTTGTGCCAATAATTTCAGAGCAACTACCAAACCAGACTGTTTCAGATGTAGTATCCTCACACCTGTGCAGTAGTCTGTGTGCGCAGGATTTTAAATTACTCGAGGctaatttttaaaattgacATCGCCCGGATGGTTTTTAGTCGATGTATTAGTGGCTGTGAAAATCTGCAGCTTTTTGAGGATGACGGTTAAGTGcgtttttgctgtagttttatttctttttaccaTCGTCTGTTCATTCATGTTTCAACTCTGTAAAATCAGTCCTGCCGAGTTCAGTGTTTTATAGTGAAACAGTCTTATTTTATGCTTCGTATCATCAGATCTTTGTCTGATAGTTCGGTCATATATAGGTGTTGAGTGCTTAGTTTACGACAACCCCtcatttttgctaaaatattgTGATTGCTTCATTTTTAAGACATGCCgttgtttttcaaaatgtgaataCATACAAAATTCTGCTTCGACAATAGGCTCATGGGTCCcggtttttaattttcatatcatttatggctttttatatacatttcttgtTGCTCCTGtctttttgaactttttctCATGTAACcgtttgttttttctctttgattTGCTTAGTTTGTGTAAAAGCTTAGAGTTCTCTTGCTATAAACCGTAGATCTTGTCTTGATTAATTTTCATGTATGATTTAGTTTTAATCTGTATGTACCAGTAGATGCCGAAAACAGATTGTTTTAGCCGAGATCTTGCATCTAGAAATGTTCTTtcatgttaataaaacagttaCTGTTAAGACATGATGGTTCAATAGGCATTAAGTGCATTTCATGTACGAGCTTTATAATTAGGTTACTCATTTGTGCTATAGtgagaaacatttctgtatCACCGCTTTGTATGATTCATTTCACTTTGTGATTTGGATGAGCATTGTTGCTGATTAATAACCGATTAAATCATACCATATTCACCAA

Function

NR:

description
PREDICTED: chromosomal protein D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218092.1 True 2760 mRNA 0.44 2 17607953 17612267
XM_043218093.1 False 2746 mRNA 0.44 2 17607953 17612258
XM_043218094.1 False 2740 mRNA 0.44 2 17607953 17612024

Neighbor

gene id symbol gene type direction distance location
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding downstream 29964 17554552 ~ 17577989 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding downstream 73845 17526412 ~ 17534108 (-)
cacng6a cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581 coding downstream 115218 17484946 ~ 17492735 (-)
rcvrn3 rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570 coding downstream 327085 17274717 ~ 17280868 (-)
necap1 necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381 coding downstream 348820 17255045 ~ 17259133 (-)
si:ch211-288g17.4 LOC107693284,LOC107724121,LOC107589401 coding upstream 37615 17649882 ~ 17656526 (-)
si:rp71-15k1.1 NA coding upstream 45792 17658059 ~ 17662089 (-)
kmt2ba LOC107724085,LOC107693264,LOC107589473,LOC107739503,LOC107665484,LOC107599517 coding upstream 50723 17662990 ~ 17685921 (-)
ndufv1 ndufv1,LOC107693353,LOC107589403,LOC108437925,LOC103023083,LOC107599567 coding upstream 76398 17688665 ~ 17694766 (-)
hcn3 hcn3,LOC107693352,LOC107724094,LOC107589404,LOC107739502,LOC107656480,LOC107599514,LOC108437924 coding upstream 83703 17695970 ~ 17706893 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding downstream 13629 17589996 ~ 17594324 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding downstream 262737 17325331 ~ 17345216 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding downstream 318573 17287667 ~ 17289380 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding downstream 339905 17265664 ~ 17268048 (-)
G133920 NA non-coding downstream 346454 17260710 ~ 17261499 (-)
G134252 NA non-coding upstream 7907 17620174 ~ 17645633 (-)
G134272 NA non-coding upstream 176760 17789027 ~ 17789326 (-)
G134273 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 non-coding upstream 177284 17789551 ~ 17798825 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding upstream 239905 17852172 ~ 17857186 (-)
G134298 NA non-coding upstream 256864 17869131 ~ 17871956 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 273719 17330697 ~ 17334234 (-)
G133949 NA other downstream 323209 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 389163 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 707177 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 709352 16897995 ~ 16898601 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 1179 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 317422 17929689 ~ 17935436 (-)
G134318 NA other upstream 398615 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 557256 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 613342 18225609 ~ 18241613 (-)

Expression


Co-expression Network