angpt1 (angpt1,LOC107654726,LOC107706239,LOC107696520,LOC107754267)


Basic Information

Item Value
gene id angpt1
gene name angpt1,LOC107654726,LOC107706239,LOC107696520,LOC107754267
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14655276 ~ 14703548 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218115.1
TGCTAGAAGCCCAGAGCAAAGTCATTCAGTCGCACGGTCACACACAGAGGaaacatagagagagagagagagagagagagagagagagcgccaGGGGAGGTCTGACAACACTCCAGACTACATCTTCATGGACACTATCTTGCTTTCTTCATAACTGCACAGCTGCAATTCACATGCAACAGTTTCTCAAGGCTTCAGTTTTTCCCCAGAAGACTAACTTGATGTAAAGTCAGGAAGTGTCTGGTGAGCCGGTGACAGGATCAATAATGACCTCCAGGCAGCGGTCCAGTCTGGACGTGATCACCACGTGCCCCAGGCCATCCGTACATCTCTGCTCATACTGATTCCACCTGACTGTGGACTGAAGGAAACCGAGGGCACCCTCAAACGAACTTTGATATTTGCAACCTCACCCTCCCCTCCAGCTCCTGCCATGTGGTGGGTTTGGTTCGTGTGCCGCTGCTTGTCCCTGGCAGCGCTGCTGGTGGTAGCAGACTGTGGAGGGGCTGAGCAAAGAAGAGGAGCAGAAGAAGGACTCAGAAGCTCCACGGCGAAAGCGAACATCAGCAGCGGTCGGAAATATCATCGGATCCAACAAGGACAGTGTAGCTACACTTTTATCCTTCCGGAGAGTGATGGAGGAGCTTGTCGAGACTTTAAAGCGGGCACGGCATACAATGCCAACGCACTTCAGCGGGACTCACCTCAACCTGAAGCAGAATTCTCCAACCAGAAGATCCAGCAGCTGGAACACGTCATGGAGAATTATACGCAGTGGTTACAAAAGATTGAGAACTACATCAAAGACAATATGAAGACAGAAATAGTGCAGTTACAACAGAGCGCCGTTCACAACCACACTGCGGCCATGTTAGAGATGGGCACCAGTCTTCTCTCCCAAACAGCTGAGCAGACACGCAAGCTAACTGATGTCGAGACACAGgttttaaatcaGACATCAAGGTTGGAAATTCAGCTGCTGGAGAATTCACTATCCACCAACAAACTGGAGAAACAACTTATGATACagataaatgaaatcaacaagATCCATGACAAGAATGGGTTTCTGGAGGAAAAAATGCAGGAGATGGAGGACAGGCACAGAGAGGAGTTGGAGGCCCTGCGGGAGGAGAAGAGCAGTCTACAGGCGCTGGTGAGCAGGCAGAGCTCAGTGATCCGGGAGCTGGAGTCTCAGCTGAGTCGAGCCACAGGAAACAGCACTGCCCTGCAGAGACAACAGCAGGATCTAATAGATACCGTGCGCAACCTCCTCAGCCTCTGTGCCAAGGATGGAGGCACAGCATTGGTGCCAAACAGCACAAAGCAAGCTGATGAGGAGAGGAAGTTTCGGGACTGTGCCGACCTCTACCAAGCAGGGTTCCAGAAGAACGGGGTTTACACTATCAACATTAGCCCACAGGAGACTAAAAAGGTGTACTGTAACATGGAGTCTGCGGGCGGAGGCTGGACCGTAATCCAAAGACGTGAAGATGGTAGCGTGGACTTTCAAAGAACATGGAAAGAATATAAAATGGGCTTTGGGAGCGTGTCGGCCGAACACTGGCTGGGAAATGAGTTTGTGCACattctgaccaatcagaagcaGCATGCCCTCCGTGTGGAGCTGACCGACTGGGACGGACACCAGGCCTTCTCTCAGTATGACAGTTTCCACATCGACAGTGAAAAACACAATTACAGGTTGTTCCTGAAGAGCCACAGCGGGACGGCGGGCAGACAGAGCAGTCTGGCGATTCACGGCGCTGACTTCAGCACTAAAGACATGGACAATGACAACTGCACGTGCAAGTGTGCGCTGATGCTCAGCGGGGgatGGTGGTACGATGCCTGTGGCCCATCCAACCTTAACGGGGTGTACTACAGACAAGGACAACATGTTGGAAAATTCAATGGAATCAAGTGGCACTATTTCAAAGGCCCCAGCTACTCTCTCCGATCCACTGTCATGATGGTTCGACCGGCCGACTTCTCGTAGTTCTCCTCAAATAGCCCAAAACATTTAGGTAAAGTGTTACTTTTTGGCCCATGACATTATCAAGTAACACTGTATAAGTGGTTAGCCGCTTGCCATGTGGATAATGCAGCATTCTTTTGAGATAACAGCTCTCCAGGAAACAGGAATCCTGTGAATAGAAGGCTGTCCTATCACCTTTGtgggactacatgggagacggcATGCTCTTTGGGAATTTATGGCAGGAGCTGACTTGGCtgggcttttatttttaaatatcagagGTATGAATTCAAGTGCCATTTACTTGTCACTCAGGACCTGTGGACTGCTGAGGCAGGCACATCACCTTTGATGGTAATAGACTGGGTCGCATTGCCTAGCATTTGCCCTGTGCTCGTCTGGCTTTCGAGTCTCCAAGTGAATTTAAAGCAGCTTGAATGTCCTTCAGTATCCTAAAAGGACctattaatgtttaatacaaaTGTGTTGCACAGTTATATTTGGGTTGTGATACttcacatttttatgcttttttatcccaatatattattattattattttattgtgtacaTTATTcctgtcaaagtgaagaaaacCATAGCATGCAGCATTAACGGTGAATTACAGTGCTATTTACAAGGGACATTTTCGGGCAAAGAACAGCACATCCACCCTCCAGCCTGATTGTATTGATTGTGCAAACTGCATATTATTATTGGCTTTGAACTTTGGTGACCTTTTAAACACATCATAACTTGgcataaaatgttgaaatgcatGCCAAAGATCACAGCTATTAAAgataatatcataaaaatattgatctaatattaatcatttgttaGAAATGATGAAGTAAAGCCAATGGAACATATGGTACTGTTGCagtataatacatataatgatgttttaattgatTCAAACCATATTGCCTTATGAGGATTTTGTCATATTAGGATTGTTTTGCAGCTCTTGTCTAAAGCAGTGTTACTCTTATCGACAAGCTTGGatgaacttattttaaatttatccTTAAACCTAAGACTATAGGTTTGCAAAAGTGTTTAGTAATTCTGAATGACTGTACTATTGAAAGGAAACGCTTTGATATATGGAATCAGATAAGTTTCATTTGTACATGAAGTTTATATATAAGCCACTTTTAACTGTTCTCAAGtataaacatttgttaaaaggACATCTTTGACTGTTACGCTAGGTTTTGCTGCTTTTATAGCATTGTGTGCTTTGTTGTTAACAAGCCAAGTGAAGTAAAAAGTTAAAACCGCATCTTTTCCATTCCATCCATTGTGTGAGCAAGCCATAAAGACTTTTGGTAAAAATAAGGTTCCGTTTGTTAACATTGTTAACATTAGCTGACATTCATAACATTCGGTTCTTCAGTTAATTAAAActtaacaaagaaaaataactcTGAggcatttttgtctttgttactaatacattatttaaatccaAAGTTGTATTTGTATCTTGTATCATATTAATTAACAGACCTGAGCCAACATGAACAATGaacagttgtatttttaatcgttaacattaacaaagattaacaGATATTGTAACAAGTGTATTGCTTATGGTGAAGTTAATGCATAAACCAATGTTAACTAATGGGACCTTATTAAGTGttactgtaaatgtacataaattcTGTTGGTACCAGCGTTTTGGTTTGTGGGTGCTTTTTGTAAGACTTTTTTAAGTTGGCAGGATTGTAAAGTCATGCTCACAAAAGTCATTGCATTCTCGCTAAAGTCATTCGAATACCATTAGAATTCCTATCTTTCATCAGAAAAGTCTGATAATGCTCTTCCAGTTGCTTTATGCAAGGCTAACTACTGTCTTCCATCACAACAGCATGGAGCATTTTACTGGAAAGTGGTACTTTTATTGTAAATCCATAAAATCTCTGGACAGCTGCAGAATGGCATGTTTCATATCACACTCCAAATACtgtaattttgtgtgtttaaaattgcTTTCCAGAGGAAAGCactgctttactttttttttttattagctcaGAACCATCAATATGTTCTGAATTAAAGAAGATGTAGCTAAAGTATCTTTAATGGTATTGACCTTGTTTGCCTGGTTCAGATTTCATTTGCCATGTTATTTAAACGCCTCATCCTTTGTAACAATGTTCATGATGTTAGttcaagaaaattaataaacaaacttgaTGCTCCAAGCTTAGCTGGA

Function

symbol description
angpt1 Predicted to enable receptor tyrosine kinase binding activity. Acts upstream of or within blood vessel development and brain development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including brain; cardiovascular system; hypochord; medial longitudinal fasciculus; and ventral mesenchyme. Human ortholog(s) of this gene implicated in brain ischemia; diabetic retinopathy; and hypertension. Orthologous to human ANGPT1 (angiopoietin 1).

NR:

description
angiopoietin-1 isoform X1

GO:

id name namespace
GO:0001568 blood vessel development biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process

KEGG:

id description
K05465 ANGPT1; angiopoietin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218115.1 True 4217 mRNA 0.42 9 14655276 14703548

Neighbor

gene id symbol gene type direction distance location
abrab abrab,LOC107654682,LOC107706162,LOC107592087 coding downstream 8533 14643684 ~ 14646743 (-)
samd12 LOC107706238,LOC107591970,LOC107592942,LOC107654725 coding downstream 13762 14578962 ~ 14641514 (-)
ext1b extl1,ext1b,LOC107654722,LOC107754269,LOC107696533,LOC107592940,LOC101464589 coding downstream 93990 14495547 ~ 14561286 (-)
LOC122324080 NA coding downstream 223725 14428903 ~ 14431551 (-)
ptdss1b ptdss1b,LOC107591967,LOC107706225,LOC107696537 coding downstream 268884 14377025 ~ 14386392 (-)
sdc2 LOC107654728,LOC107591973,LOC107706240,LOC107592944,LOC107688380,LOC107754266 coding upstream 103191 14806739 ~ 14830515 (-)
psmb2 psmb2,LOC107592948,LOC107688376,LOC107591978 coding upstream 204079 14907627 ~ 14915399 (-)
LOC122323256 LOC107706246,LOC107654736,LOC107754261,LOC107688374,LOC107591981 coding upstream 218113 14921661 ~ 14924110 (-)
LOC122323565 clspn,LOC107706248,LOC107654737,LOC107754255 coding upstream 222170 14925718 ~ 14935069 (-)
c19h1orf109 LOC107688373,LOC107754259,LOC107592951,LOC107654741,LOC107591985 coding upstream 253352 14956900 ~ 14958500 (-)
G133016 rbm24a,LOC107696536,LOC107592929,LOC107706227,LOC107754275,LOC107654717,LOC107591968 non-coding downstream 226454 14403518 ~ 14428822 (-)
LOC122324095 NA non-coding downstream 382558 14268267 ~ 14272718 (-)
G132852 NA non-coding downstream 1093817 13561128 ~ 13561459 (-)
G132846 NA non-coding downstream 1105525 13548740 ~ 13549751 (-)
G132837 NA non-coding downstream 1127136 13527251 ~ 13528140 (-)
G133144 NA non-coding upstream 131904 14835452 ~ 14835861 (-)
G133143 NA non-coding upstream 132912 14836460 ~ 14837953 (-)
G133190 LOC107654743,LOC107706254 non-coding upstream 487257 15190805 ~ 15277403 (-)
G133226 NA non-coding upstream 680299 15383847 ~ 15384115 (-)
G133313 NA non-coding upstream 710427 15413975 ~ 15424498 (-)
G132785 NA other downstream 1146823 13507664 ~ 13508453 (-)
G132784 eef1a1l1,eef1a1l2,LOC107742828,LOC100526699,LOC107696583,LOC107589443,LOC107706208,LOC107654700,LOC107696561,LOC102296947,LOC101482897,LOC102205261,LOC108247920,LOC107706209,LOC107589444,LOC107654701,LOC108426655,LOC108256978,LOC107591637,LOC107742829,LOC105892153,LOC108426629 other downstream 1152906 13494830 ~ 13502370 (-)
G132733 NA other downstream 1369815 13284531 ~ 13285461 (-)
cart4 cart4,LOC107706148,LOC107591606,LOC107593588,LOC107731457,LOC107696592,LOC107670162 other downstream 1625927 13027817 ~ 13029349 (-)
sem1 NA other downstream 1986061 12597774 ~ 12669215 (-)
G133132 NA other upstream 80640 14784188 ~ 14784423 (-)
zgc:114119 LOC107654731,LOC107688423,LOC107706242,LOC107754290,LOC107592983 other upstream 183980 14887528 ~ 14891918 (-)
G133217 NA other upstream 662886 15366434 ~ 15369736 (-)
LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 other upstream 941314 15644862 ~ 15648579 (-)
G133373 LOC107748749,LOC107592092,LOC107654694,LOC107710322,LOC107688413,LOC107602391 other upstream 956371 15659919 ~ 15660720 (-)

Expression


Co-expression Network