kpna6 (kpna6,LOC107584279,LOC107745716,LOC107562870)


Basic Information

Item Value
gene id kpna6
gene name kpna6,LOC107584279,LOC107745716,LOC107562870
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7786886 ~ 7801721 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218134.1
CTTCGGCTCTCCGTAGATCGCCGACATATTGTTTGTGAGGAGCAAATTCTGGAAGACAAGGAGAGTGTTAAGATTACAGCGTTCGTATAACCAGTAATTAAATCGTAAATCGGTAAAGAAAGCACGATGGAGCCTTCAGGAAGTCCTGCGAAGGATAATTTCAGGATGAACCGCTACAAGAACAAAGCACTCAACCTGGAGGAGATGCGCCGGAGAAGGGAGGAGGAAGGCATTCAGCTGAGAAAACAGAAACGAGAGCAACAGCTGTTTAAAAGGAGAAATGTGGAGCTGCTTGGTGAAGAAGGGGGGATGTTTGACAGTCCACTTATGGATTCCTACGTCTCCTCCACTACAGCCCCAgaTGGAGTAATTACAAGAGACATGGTTGAAATGCTCTTCTCGGAAGATCCTGAACTGCAGCTGGTCACAACACAGAGGTTCAGAAAACTGCTTTCCAAAGAACCAAACCCTCCTATCGACGAGGTGATAAGCACACCAGGAATTGTGAATAGATTCGTTGAGTTTCTACAGAAAAGTACAAATTGCACATTACAGTTTGAGGCGGCTTGGGCACTGACCAACATTGCGTCTGGAACATCTCAGCAGACGAAGTTTGTGATCGAGGCCGGTGCTGTACCCGTCTTTATCGAGCTTCTCAACTCTGAGTTTGAAGACGTGCAGGAGCAGGCTGTTTGGGCTTTGGGGAACATTGCGGGAGACAGCGCTGTGTGCAGAGATTATGTGCTAAACTGTAATATCCTTCCTCCTCTACTAATGCTGCTGACCAAATCAACTCGTCTCACGATGACCAGGAATGCTGTGTGGGCCTTGTCCAACCTCTGCAGAGGCAAAAGTCCACCCCCAGATTTTGAGAAGGTTTCTCCTTGCCTGCCTGTGCTGTCCCGTCTCTTGTTCAGCAGTGATTCAGACCTGCTGGCTGATGCCTGTTGGGCTTTGTCCTATCTCTCTGATGGGCCCAATGAGAAGATCCAGGCAGTTATTGATTCGGGGGTCTGCAGGAGGCTGGTGGAGCTGCTCATGCACACAGATTACAAGGTGGCCTCTCCTGCTCTGAGGGCCGTTGGAAACATTGTTACAGGAGATGACATTCAGACACAgGTGGTGTTGAACTGCTCCGCTCTCCCCTGCCTGCTGCACCTGCTCAGTAGCGCCAAGGAATCCATCAGGAAGGAGGCTTGCTGGACCATCTCCAACATCACAGCGGGAAACAGAGCGCAGATTCAGGCCGTAATAGATGCAAACATCTTCCCAGTCTTGATAGATATCCTACAGAAAGCCGAATTCCGCACCAGGAAGGAGGCGGCGTGGGCGATCACTAATGCCACGTCAGGTGGCACACCCGAGCAGATCAGGTATCTGGTGAATTTGGGCTGCATTAAACCTCTCTGTGATCTGTTGACTGTGATGGACTCCAAGATCGTTCTGGTGGCTCTGAATGGTCTGGAGAACATTCTCCGACTGGGCGAGCAGGAGGCCAAACAAAACGGCAGCGGCCTCAACCCTTACTGCAGTCTTATAGAGGAAGCCTATGgTTTGGACAAAATCGAGTTCCTACAGAGTCATGAAAATCAGGAGATCTACCAGAAAGCCTTTGACCTCATCGAGCACTACTTCGGAGTAGAGGAAGAGGATGCCAGTCTGGCACCACAGGTGGATGAGAACCAGCAGCAGTTTCTTTTCCCGCAGCAGGAGGCCCCCATGGAGGGCTTCCAGCTATAACCAGCCTTCTGACTCTTTTCGGCCGCCTCTTACCTTTACACCCATCCCTGCGCCCAATACCGGTACTAAAACATACGCCGGATTCACTCAACCACTGAACCAAATTTAACCCAACGACCCAGACTGATTTATTTAGACACTGAAGTGTGTCTCACGTAGGGAAACATATCCTCTGCCCTGTCACACACAAGAGAGCTGGATTTttagtttggtttttttgtcCCTCCCCCCTCAGTGATGCAGCTATGTAATCATCCCCCTCAGGTAGAAATTGTGACGCTGTgtctctttactttttttttttttttttttttttttttttttttaaggggagATACGCTACAGTTCTCCCCTTTCACTGAAAGATGAGAGcattgctttttcatttatttaaaatcagaaaatcTTATACTTTTTGGTcctggtttgtttttcatcataTAGCGTTtctagaatttatttttttttgtttaattattcatatccTGCTAATTAAACGAGCCTGGTTGTGTTTGATATGGCCGTGCTTTATAAACGAAACTCTACCGTGATATCTGCAGATGCGTTTCACGAGGATTTAAGCACTCTTCGAAGCCTTCGCGAAGCCGTTTCCTTTTTCTTAGTATTAGTATTCATCATTTCAGACCATGCTGGGTGTGGAGTTTATGTAGAGTCTGacgtggtggtggtggtggtgggtgGTGTTGAAATAATCCAGGTATTTTAGTAAAAGAGTATCCTAACATCAGTCATTACGGTTTAAAGACAATGGCTGGAAAAGTGGGGCCCGAAGTGGGGCCCAATTTAGTAAGGATAATGcccagttttgtttgttttttttttttatcagtcagAGGTGAAATCTCTAGTTGTAGGATGTTCGTGGTGTGCAGTGTTATGAATAACTCTTCTTTTGATCAAAAGGCTTTAACTTTGAGATGTGATCTGGgggaaatacacacacacacacatctgaggGCCGGATGGATGCACATGATGGAGTCTTAATTCTGCTCGGATAGTAATTTCTGGCGGAGAGTAAATCTGGGTGGTTCGAGGTGTTTGTTCAGCGCAGCCCTCAGAATGTGCATGTTGGGGTTTTGCATGGTGTTCAACAATCATTTTGTATCTCTTGCCAGATCTTCATTCAGCAATTAGCTTGCACTTCTTAGATAAAGTAGTACCggtttttgtagttttgcagGTGCTGTAGGTATGGCAAGGaatacttattaaaataatgaaatatatgggcaaaaaaataatatatatatctatatatatatataaatagatattatGTTCTATTTGCACACACCTTGCACACATGCGTACAAGACCAGCATACACTTCATAAACATGTACACAAGCAGATTAGCATAAAACCGAGGGGAAATGACTTCCATAATCTcccaaatccttttttttttcctgcatatGCAAGTACGTTCGCGTCGATTTGTTCCACCGTTTGGCACTTTTTGAGTTGATGCACTAAGAATTAAACACACCGGAGTTTGACGTTGGGACTGCTGTGGATTGAATCAAAAGTTCGAATATTAACCTCTCGCCCTTTACGAAACTTTAAAAACTACACGCAGACTTTTCCTGTCGTTATGGAAGCATTTATCCTCTACCTCCGCAGTACACTGACCGAAGGGTGCTTCTCTGAGTGAATGCTAGGGGGTCATTTGATTTAGGACGGGCCCCTATCTACGAAAACATAGGGAGACGTTGACTGACGGATGGTGCGTGAAAGGAAGTGTCGCTTTTATCAGCATCCTGTGTTTGATTGACTAGTAACTAGATGTCACTCCGATGCATTTCCTGATCAGGACCGATAACCGAAAGGAGGTTTCCATACTAATTCTGGTTCAAGAACCCTTTATGAAATCAAGACTTGAATTTAACTCTTTGAAAATACCTCGCCACGATCTGATGTACTCTGACAACAACAGTATCCACTTTAAATCGGTTCAAATCCTAGTTCTGCGTGATATTAGATGGCATTTGCTGTATTTACAGGATGTCCGTCTCGGAATGAGGAGGCTGCAGTCATCCATGTTTCCGCACACATCAGAGAAATGGGAAAATAGACCGAAATGATTGGGAGGAAGGGAAGAAAACTAtgcttattaatatatatatcgAATGGTCTACAAGACCACAGGTGTGTTGatccaaaaaacacaaagaaatgatCTCTTAATGGAAATGCACTCCTATTCACAAAAGTGCCAATCAGACCAACAAAGACAAGAGGCTGATGCGTATCAATctgtctttgattttttttttttccttccttttttttttttttttttcttttatttacttgAATGTGCACACATGCTGTGCAAATATTGCTGCTCTATTTTCTTATCTTACAAATTAGACGTTACATTGTCTGCCACAGTTTCAATAGAGATGTGATGGTCTGCTATTTGTACACCAAATTGGTAAACTCAAAGgtataaagattaaaaaaaatgcataatttattgtgctggatgaattaatacttttatcgAAGGCCAATGCAATGTTGAAATACTGTACTGTTTGCCTAGCTTGTGTTCCTTTTGGACGGCTTGGAGGAAGTGAGAAAGATGCTACCGATTGAAGGAGAAACCCTGTAAACTCTTTTCTTGCTCTCGTTgcgtgtgtttttgtcttgtttttgagCGCACTAGCTGACCATGTAGACCCAACTGTGTTTGTTCCGAGTCTAACTTCCACGCGTAACCAACCGTAGCACAATTACAGCAAATCCAAATCAGTTCGTAGATGTTTTGTTCTCCATTTAAGGACATACGCTTTAaaagccaattttttttttttataactaaaCGAAACTGGGTGTCATTTGATCCGTGTATCTCTGTGAATTACAATTAAACCAGAAATTCAAcggttatattgttatattggcACAGTTTAAAGTTGCAGTCCTGGCACTGCTCTTTACtcctttaaaataacttctgAGAAGtgcagaaaaacaataaaatatttacaaaaggcCACAAGTATGTGAAATTGGGTCTTTATGGTCTTCCGTCCTAGATCTTGTAGATGTTGACATTTGGAGACTTTTTGTCTCTTCCAAACCTGGAGCCGATGCATATGGCTGTGTCTAGTAATGCTGACTCACCTGTGTTTACAATGCTACATGTTTAAGTACTTTTCATACACAATATTAAGACTTGCCCAGGTGGATATTGTATCCTGGTTTGGTAATTACtttccttttaaatgtatttatatttaaatcttcttttttttcttttttttttcctcctctgcCTACGATTGCCCATACTGTGACTGACTTGACTTTACCGACGATATGAATGAGTGACGGACACACAAACTGAACATgtcacacaaacatatacatgaacaattctgaacaaatgtttttgttttctcttttctttttttttgtccaaatacaaataaaaggaTAAAACACC

Function

symbol description
kpna6 Predicted to enable nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Orthologous to human KPNA6 (karyopherin subunit alpha 6).

NR:

description
PREDICTED: importin subunit alpha-7 isoform X2

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15042 KPNA5_6; importin subunit alpha-6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218134.1 True 5216 mRNA 0.42 14 7786886 7801721

Neighbor

gene id symbol gene type direction distance location
txlna txlna,LOC107709285,LOC107691504,LOC107687085,LOC107562872 coding downstream 2661 7777473 ~ 7784225 (-)
eif3i eif3i,LOC107687089,LOC107745717,LOC107709286,LOC107691510 coding downstream 9772 7773965 ~ 7777114 (-)
fndc5b fndc5b,LOC107584283,LOC107687074,LOC107691512,LOC107709291,LOC107562878,LOC108433842,LOC108238726 coding downstream 156130 7611987 ~ 7630756 (-)
LOC122323247 LOC107687071 coding downstream 205652 7576180 ~ 7581234 (-)
e2f3 e2f3,LOC107687070,LOC107745724,LOC107691507,LOC107562874,LOC107709295,LOC107584335 coding downstream 211382 7568543 ~ 7575504 (-)
agr2 agr2,LOC107584355,LOC107687097,LOC107745729,LOC107562756,LOC107709281,LOC107691548 coding upstream 343915 8145636 ~ 8147485 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107691520,LOC107745712,LOC107687078 coding upstream 349238 8150959 ~ 8162163 (-)
abcf1 abcf1,LOC107745711,LOC107687077,LOC107709273 coding upstream 363147 8164868 ~ 8174472 (-)
bag6l LOC107687076,LOC107691523,LOC107745707,LOC107709282 coding upstream 380299 8182020 ~ 8195819 (-)
hpcal4 hpcal4,LOC107562761,LOC107687092,LOC107691524,LOC102228321,LOC107745708 coding upstream 395990 8197711 ~ 8215983 (-)
G131363 NA non-coding downstream 196739 7567948 ~ 7590147 (-)
G131318 NA non-coding downstream 431186 7354144 ~ 7355700 (-)
G131305 NA non-coding downstream 524276 7260295 ~ 7262610 (-)
G131296 NA non-coding downstream 532330 7206189 ~ 7254556 (-)
G131265 mrpl36 non-coding downstream 741924 7043507 ~ 7044962 (-)
G131411 NA non-coding upstream 148068 7949789 ~ 7950001 (-)
G131413 NA non-coding upstream 185799 7987520 ~ 7988325 (-)
LOC122323519 NA non-coding upstream 194366 7996087 ~ 7997257 (-)
LOC122324217 NA non-coding upstream 244555 8046276 ~ 8046879 (-)
LOC122324233 NA non-coding upstream 276379 8078100 ~ 8083896 (-)
G131373 NA other downstream 181743 7602133 ~ 7605143 (-)
LOC122323248 LOC107687071 other downstream 334970 7445758 ~ 7451916 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other downstream 388940 7395180 ~ 7397946 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 426743 7356621 ~ 7360143 (-)
srd5a1 srd5a1,LOC107691541,LOC107711310,LOC107595623,LOC107694335 other downstream 928226 6850369 ~ 6858660 (-)
khdrbs1b LOC107745714,LOC107691518,LOC107584277,LOC107687088,LOC107709277,LOC107562753 other upstream 317228 8118949 ~ 8129270 (-)
trit1 trit1,LOC107691527,LOC107687082,LOC107709271,LOC107562762,LOC107724344 other upstream 485424 8287145 ~ 8320901 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other upstream 852777 8654498 ~ 8659486 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other upstream 922785 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other upstream 925538 8727259 ~ 8738786 (-)

Expression


Co-expression Network