sync (LOC107724321,LOC107687084,LOC107584354,LOC107709258,LOC107568802,LOC107691532)


Basic Information

Item Value
gene id sync
gene name LOC107724321,LOC107687084,LOC107584354,LOC107709258,LOC107568802,LOC107691532
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8424778 ~ 8429852 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218136.1
TTTCTTCCTccttctgtttattaataaatgtaaacagatAAAACGTTGCCTGAGAGACCAGCGGCATATGTTTAAACTCGGTCAGTGAGAGGCCAGACTAGCTGCTGTCCTATTTTCATGTTCAGTTGGGTACCAGCTCTTCACTTTGGGTTCACTTCATGGTTATTGTCCCGGAAAATTGTTATCTGAGTTGAGGTTAACATATAAAATGGAGGATCAAGAAATGAACTTTGAGCAAGCTTATGGATCTCTATCAGAGACAGACAAAACATTCGAGCCCTTATTTATTGAGGAGGAAAATGAAGACTACTTTGAAGACTGCTTGGAAGAGATTGAGGCTGCTCTAACTCTTCCTGGAGAGTCCATGCCTTATTCAATAAAATGCAGAGAAGCTTTGCAAGCTGAGTTTAATGGACTTATGCAACAGATGTTGGCACAGTTAGATGCTTTTGATGCAGCCCATCCAACTACTACACCACTGGAGTTATTATCAGAAACGGTGAACAAAACGGACAAGAATGGATTTAGGAAAACAATCGAGCGCATTCCTGAGAAAGAGCAAAATGTGTTGCAGGTAGAAGATAATGCTGTTGGCATCCCTGTTGAGGCAAAACCTGAGTTCTCTGCTAGCTTGGAAACAGAAAAACTCAGAGAAGCATTTGAGAGTTGTATTGAGGAGGTGGGCCAGCTGGAGCGCAGGAGGGATGAGTTGGTTCAGGAGCTTCTGGAGCTGGAGGAGCCAATGGCCCAAGAGCTACAGACTGTGAGGGAGGCTTTGGGGGAAGAACGAGGCCTCCTGTCCAAAGTCAGACTGGAAAGACAAAGCCTGCAGGACGAAACTCAAAAGACCAAGAGACGCCTGTTCATAGCGGCCCGAGATTGTGCACAGAGACAAGTACAGCTTGAATTACAACAGAAAGAAGTGGAGCAACTCAACCAAGCTCAGGAAGAGCTGAAGGCCCTTGCTGCTAAGCTGACTGAGGAGATTGCCAAGATCCATTCAGATCACCAAAGCCACCTGCAAGAACTACAAAAGCAACTGAACACCACTCAGGAATCCAGCAAGAAGAAAAATCGCTCTTATGTAACTCAAGGACGGCGGGCCTCGTGTGACCTCCAGCAGTACCTGCAAGGTGGGATCAAAGCTCTGGAGGAGTTCTACGAGCCCCGGCTAGTGTCCCTGCTGAAGAGACGTGAGGTCACCATGGATGCCCTCAGTAAGGCTAAAGAGCAGTGTCAGAAGCTGAGGGTCCAGTTAGGACCACTGAGAGAAGAAGAGCAAATGCTGAAACTCCATAGAACTTGTCTGGAGGAGAGGATCCAACTAATGGAGAGACAGAGGAGGGAAAACGTGGAACAATATCGAGACACAGTTGATGCCTTAGAGGAGAACATCAGAGAACTGAAAACCGAGCTCAAGATCCAGATAAAGAAGACAGAAGAATTGGATATGCTGAAGAATAACATGGCCAAAGAGTTGTTCTTCTACAGAGAGCATGTAGAGGGCACCTGCAAGCAAGAGAACAGTACGGTGGTGGAAAAAACCTAATGAACTAAAGTTTGTTACTAATTTtcttatgtaaaatgtatttcacatatTGTTTTCATAGTTTAATGGAAACTGCCTCTCTTCTCTTATTAATAGTATAATAGTCCATCACCAAAACAGTAACCCCAGTTTACTGAAGACGCACGTGTTTCTTGCAAAAGTctaaatttttgaaaaaaaacaaacactaacaGCATAGCCCAATTGTGTCAGATACACAGATCTTTGTAAGTTACACAGTTTAAATAAcgctgtttttgttgtgtgtacAAGAGGGAATATAGCTCATATATCAGTGGTGCCTGTGAACTAAGTGCTTTCTCTTATGAGTAAGTTAAGtgggcaaaacaaagacttattTGGGCACTGTAGGAGAGCTCTATAAACATGCTGACGGCATGATGGTGAGACCGTTTAGATGAAGGCCAAAGAGAAGGTTAATTAAGTGCTTGGTTGATTTGATGTGTCTTGTTAATAAGAtctgaaataaacaagaaaGAATTAGATGTATTGTTTATATGACCTGTACCTAGTTGTGAACAGAGTGACAGGGAGCacgtttttttaaagactgaaTAAGTTGCTATTTCAAGACTTTTTGGTGACTAAAATGTAGAGAGCTTGAatttggcaaaaataaaaaggcatttgttgaggAA

Function

NR:

description
uncharacterized protein LOC110496755

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10377 SYNC1; syncoilin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218136.1 True 2208 mRNA 0.43 5 8424778 8429852

Neighbor

gene id symbol gene type direction distance location
mfsd2ab mfsd2ab,LOC107724351,LOC107687081,LOC107584275,LOC107709268,LOC107568806,LOC107691531 coding upstream 54657 8356213 ~ 8370121 (+)
fam49al fam49a,LOC103035846,LOC108257369,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC103143294,LOC101166565,LOC107687090,LOC108425450,LOC101064326 coding upstream 152136 8248863 ~ 8272642 (+)
c19h6orf136 si:ch211-215a10.4,LOC107745710,LOC107687086,LOC107691522,LOC107709275,LOC107562760 coding upstream 243335 8175365 ~ 8181443 (+)
mrps18b LOC107745713,LOC107687091,LOC107691521,LOC107584330 coding upstream 259912 8162970 ~ 8164866 (+)
tspan13b tspan13b,LOC107691547,LOC107584356,LOC107562755,LOC107687093,LOC108273354,LOC108433833 coding upstream 279707 8139694 ~ 8145071 (+)
LOC122323432 LOC107702070,LOC107724274,LOC107584324,LOC107691533,LOC107709263,LOC107568800 coding downstream 20168 8450020 ~ 8462161 (+)
sostdc1b LOC107702082,LOC107724326,LOC107584353,LOC107709264,LOC107568801,LOC107691536 coding downstream 29765 8459617 ~ 8461632 (+)
meox2b meox2b,LOC107724325,LOC107584352,LOC107568803,LOC107709256,LOC107696195,LOC107702081 coding downstream 47050 8476902 ~ 8496897 (+)
pip4p2 tmem55a,LOC107724355,LOC107702130,LOC107696196,LOC107709255 coding downstream 151115 8580967 ~ 8599126 (+)
tmem64 tmem64,LOC107702125,LOC107724367,LOC107555563,LOC107743834 coding downstream 199894 8629746 ~ 8639005 (+)
G131485 myclb,LOC107584272,LOC107709270,LOC107691528,LOC107687096,LOC107562763,LOC107724275 non-coding upstream 100039 8296758 ~ 8324739 (+)
G131442 NA non-coding upstream 240136 8183678 ~ 8184642 (+)
G131439 NA non-coding upstream 251731 8171257 ~ 8173047 (+)
G131420 NA non-coding upstream 278929 8096395 ~ 8145849 (+)
G131414 NA non-coding upstream 300940 8044516 ~ 8123838 (+)
G131513 NA non-coding downstream 6446 8436298 ~ 8438123 (+)
LOC122324120 NA non-coding downstream 81481 8511333 ~ 8528105 (+)
G131551 NA non-coding downstream 122113 8551965 ~ 8555555 (+)
LOC122324246 NA non-coding downstream 129758 8559610 ~ 8567227 (+)
G131528 NA non-coding downstream 144875 8574727 ~ 8578491 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 other upstream 48911 8370706 ~ 8375867 (+)
si:ch73-130a3.4 LOC107736638,LOC107584280,LOC107687100,LOC107584333 other upstream 638219 7784756 ~ 7786559 (+)
G131351 NA other upstream 809490 7608940 ~ 7615288 (+)
ldlrap1a ldlrap1a,LOC107709294,LOC107691509,LOC107562879,LOC107687073,LOC107745728 other upstream 819552 7591514 ~ 7605226 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other upstream 970013 7451050 ~ 7454765 (+)
LOC122323856 LOC107745707,LOC107709282,LOC107691523 other downstream 730518 9160370 ~ 9166094 (+)
si:ch211-215i13.3 LOC107579802,LOC107724304,LOC107702091 other downstream 1106466 9536318 ~ 9538502 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other downstream 1207121 9636973 ~ 9638961 (+)
triqk triqk,LOC107724370,LOC107710222,LOC107702072 other downstream 1304368 9734220 ~ 9753556 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other downstream 1985788 10415640 ~ 10418096 (+)

Expression


Co-expression Network