rbbp4 (rbbp4,LOC107568807,LOC107709266,LOC107584269,LOC105015627)


Basic Information

Item Value
gene id rbbp4
gene name rbbp4,LOC107568807,LOC107709266,LOC107584269,LOC105015627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8430681 ~ 8435138 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218137.1
TCCGCTCATTGGTGGCGCGTGCTCCGCCGTGTCCGTCGGAGTTGGCGCGAACGTGCACGCCGGCGCGAGACAAAGAGCATCCTGCACTCCCGAGGAAACTACACCGGTATCCTGCTATCGGTCGAGTTTGCGAGAGATAGCTGTCTGTCGAGGCGTTATGGCTGATAAAGAAGCTGCATTCGATGACGCGGTGGAGGAGAGGGTGATAAAtgaagaatataaaatatggaAGAAAAACACACCGTTTCTTTACGATCTGGTGATGACCCACGCGCTGGAGTGGCCCAGTCTCACTGCTCAGTGGTTGCCAGATGTGaccagGCCTGAAGGGAAGGATTTTAGCGTACACCGCCTGGTTCTCGGCACACATACCTCTGATGAGCAGAATCACCTGGTTATTGCCAGTGTCCAGCTGCCCAATGACGATGCCCAGTTTGATGCCTCGCATTACGACAGTGAAAAAGGAGAATTTGGTGGGTTTGGCTCGGTAAGTGGCAAGATAGAGATTGAAATCAAGATTAATCATGAGGGAGAGGTGAACAGGGCTCGCTACATGCCGCAGAACCCCTGCATCATTGCCACCAAGACCCCCACGAGTGACGTGCTGGTCTTTGACTACACCAAACACCCCTCCAAACCTGACCCCTCCGGAGAGTGCACTCCTGATCTGCGTCTGAGGGGACATCAAAAAGAAGGATACGGTCTGTCCTGGAACCCCAACTTAAGTGGCTGCCTACTGAGTGCATCTGATGATCACACCATCTGTCTTTGGGACATCAGCACGGTTCCAAAGGAGGGAAAAATAGTGGACGCTAAGACCATTTTTACCGGTCACACCGCTGTAGTGGAGGACGTGTCTTGGCATCTTCTGCATGAGTCTCTCTTTGGGTCTGTTGCAGATGACCAGAAGCTTATGATCTGGGACACGCGCTCCAATAACACATCCAAACCCAGTCATGCAGTAGATGCTCATACTGCAGAGGTCAACTGTTTGTCCTTCAACCCCTACAGCGAGTTCATTCTGGCCACCGGTTCTGCTGACAAAACTGTTGCGTTGTGGGATCTGAGAAACCTGAAGCTGAAACTTCACTCGTTCGAATCGCACAAAGATGAAATATTTCAGGTTCAGTGGTCGCCCCATAATGAGACCATACTGGCCTCCAGCGGGACAGACAGGCGGCTTAATGTTTGGGACCTCAGTAAAATCGGTGAAGAACAGTCACCAGAAGATGCAGAAGATGGACCTCCAGAGCTACTGTTCATCCATGGAGGCCATACAGCAAAGATATCTGACTTCTCCTGGAATCCAAATGAACCGTGGGTGATTTGCTCTGTATCTGAGGACAACATCATGCAAGTGTGGCAGATGGCAGAGAACATCTACAATGATGAGGACCCAGAGGGGGCAGCAGACACTGAGGTTCAGGGATAAAGCTGCTCTTTACACCACCCCACTCTCAGCATAAGGCAAAACTCTTCTAAAAACTGTCCGTCTACACACAAGTGAAGAACTTAAGTGCTCTCCCCCTAAGTAATGGAAATGGAGTAATTGACTATTTCCCCACCAGGCATTTTCTACTACTATGTTAATAGAGTATTTTTCTAAGAAAAATGTCAGTTGATCATTGGTCAATATCAGAATGAGACACACAAACCTTCTTATCCCTTCCCACAAGTGTCTCATGAAGATTTCCTTGCAGGTTAAGTATACTTAAAAGTATCACTTAATATCAGAAGTGTGTATACAGGTGTGTAGTATATTGTGACCAGAGTGCAGTGGTGCAATGTTGACGTTCagtagattatttttttttctttttttttttttttttaacttgtccTACAAATTCATTTTCCCATTTAAGTACTGGATAGATGTATCAATAACTTAAGCTCTTGTGTACTCTTTTTACTTTGAGCTTCACGTATGAGTCAGGTGgtgtttaatgtctttttaatattGTGACTTTTCAATGTTTTTCTCCTGTATGTCCATACCGTTGTACAGAACATTATGaataaactgtttttgttgataa

Function

symbol description
rbbp4 Predicted to contribute to ATPase, acting on DNA. Acts upstream of or within fin regeneration. Predicted to be located in nucleus. Predicted to be part of CAF-1 complex and ESC/E(Z) complex. Is expressed in gonad; muscle; nervous system; and pectoral fin. Orthologous to human RBBP4 (RB binding protein 4, chromatin remodeling factor).

NR:

description
PREDICTED: histone-binding protein RBBP4

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0035098 ESC/E(Z) complex cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218137.1 True 2039 mRNA 0.46 12 8430681 8435138

Neighbor

gene id symbol gene type direction distance location
kiaa1522 kiaa1522,LOC107724336,LOC107584271,LOC107709267,LOC107568804 coding downstream 17847 8376208 ~ 8412834 (-)
myclb myclb,LOC107584272,LOC107709270,LOC107562763,LOC107691528,LOC107687096,LOC107724275 coding downstream 103710 8322649 ~ 8326971 (-)
hpcal4 hpcal4,LOC107562761,LOC107687092,LOC107691524,LOC102228321,LOC107745708 coding downstream 214698 8197711 ~ 8215983 (-)
bag6l LOC107687076,LOC107691523,LOC107745707,LOC107709282 coding downstream 234862 8182020 ~ 8195819 (-)
abcf1 abcf1,LOC107745711,LOC107687077,LOC107709273 coding downstream 256209 8164868 ~ 8174472 (-)
bzw2 bzw2,LOC107724358,LOC107702135,LOC107709265,LOC107691535 coding upstream 1153 8436291 ~ 8449744 (-)
arl4ab arl4ab,LOC107702133,LOC107724349,LOC107584268,LOC107555559,LOC107709262,LOC107696203,LOC108425359 coding upstream 121762 8556900 ~ 8559488 (-)
scin scin,LOC107724348,LOC107702132,LOC107696204,LOC107709261 coding upstream 126239 8561377 ~ 8569332 (-)
tmem106bb tmem106bb,LOC107696205,LOC107584266,LOC107709260,LOC107724356,LOC107702131,LOC107555560 coding upstream 142128 8577266 ~ 8581347 (-)
necab1 necab1,LOC107724363,LOC107702129,LOC107696197 coding upstream 164968 8600106 ~ 8627992 (-)
G131511 NA non-coding downstream 75564 8353533 ~ 8355117 (-)
G131508 NA non-coding downstream 147240 8283098 ~ 8283441 (-)
G131507 NA non-coding downstream 147857 8282601 ~ 8282824 (-)
G131506 NA non-coding downstream 150421 8279994 ~ 8280260 (-)
G131501 NA non-coding downstream 181454 8248821 ~ 8249227 (-)
G131654 NA non-coding upstream 106086 8541224 ~ 8555592 (-)
G131675 NA non-coding upstream 204290 8639428 ~ 8639657 (-)
G131697 NA non-coding upstream 484902 8920040 ~ 8920695 (-)
G131820 atxn1,atxn1a,LOC107696220,LOC107724277,LOC107743820,LOC107702111 non-coding upstream 604810 9039948 ~ 9048451 (-)
G131827 NA non-coding upstream 645712 9080850 ~ 9081105 (-)
trit1 trit1,LOC107691527,LOC107687082,LOC107709271,LOC107562762,LOC107724344 other downstream 109780 8287145 ~ 8320901 (-)
khdrbs1b LOC107745714,LOC107691518,LOC107584277,LOC107687088,LOC107709277,LOC107562753 other downstream 301411 8118949 ~ 8129270 (-)
G131373 NA other downstream 825538 7602133 ~ 7605143 (-)
LOC122323248 LOC107687071 other downstream 978765 7445758 ~ 7451916 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other downstream 1032735 7395180 ~ 7397946 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other upstream 219360 8654498 ~ 8659486 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other upstream 289368 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other upstream 292121 8727259 ~ 8738786 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other upstream 873582 9308720 ~ 9309352 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other upstream 1224218 9659356 ~ 9664459 (-)

Expression


Co-expression Network