col28a1a (col28a1,LOC107754784)


Basic Information

Item Value
gene id col28a1a
gene name col28a1,LOC107754784
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5725368 ~ 5739185 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218150.1
ATGCAGTGTGGTGTGATGCTGTGTGTCCTGCTGCTGATACTGTCCTCTAGTGCTAGAAAccagaacagaagaaaaaacagacagaagcCGGACAACAGTGTCATGCAGAATGAAGTCAAAACTATGTTCTGTCCAGTGGAGTTGGCGTTTCTAGTGGACAGTTCGGAGAAAGCCAAAATGCTGTTGTTTGAGAGGCAGCGTGAGTTCGTGTTGCGCTTCAGCACCAGACTGATGCAGCTCCGGGTGTCGGGCTGGCGTATGCGGGTGAGACTCGCCCTCCTGCAGTACAGCAGCACCGTCTCAGTGGAGCACAACTTCCGCGACTGGCAGGACATCGACGTGTTTCACAGCCGAGTGGATGCCATGACTTACATCGGCCACGGCACCTACTCAGCTTATGCCATCTCTAACGCCACTCGCCTCTTCACCCCCGAGACATCGCCCAGTAGCCTGAGAGCGGCGCTTCTGTTGACGGAAGGGGTGGACCACCCGCGCAGCCCCAGCGCTGTGAGCGCGGCCGCGGACGCCAAGAACCACAACATCCGCATGTTCGTCATCGGGCTGTCAGGATCCGCACGAGACGAGGAGGACAACGGTAGGCTGAGGTCTATTGCCAGCGCACCGCCCCAGCAGCATCTGTTCAGCCTCACCGACCCGCAGCTGGATGACAAGCTCTTCAGGGAACTGAGTGAACTTGCAAACACAGTTTGTCCTCAACCCAAATCCTGTCAGTGtgaaaaaggagagagaggtCTTCCCGGAAATCCGGGTAAACTAGGCGATCCAGGATTTGATGGGCCTCCTGGTCTTAAAGGATCTAAAGGAGAGGCAGGTTTAAATGGACGTCCAGGATTAGAGGGTCTAAGGGGAAGACCAGGTTCAAAAGGAGAAAAGGGCGGGAAAGGAGAATGTAGCGCCCCAGGGATCAAAGGAGATCAAGGCCCAGACGGACCTCCAGGACCACGTGGACCACGAGGAGATCAGGGACtgaatggtaaccctggagacaCTGGCCCCGAGGGCCCCATCGGATCTAAAGGTGAGCGAGGACCCAGCGGACCCACCGGGCCCCCAGGGGACCCAGGGATGGGGGTTCCTGGTGCGAAGGGGGAGAAAGGTGGCCAAGGCAGACCTGGGCCGACTGGGCCTGTTGGTATCGGCGAGCCAGGATTGCCCGGCCCATCAGGACCTCCAGGAGTTCAAGGCAACCAAGGGTTTCCCGGAGAGGGTTTACCAGGACCGAAGGGTGACAGAGGATTTGAGGGTCCTAAGGGTGGACGTGGACCTCCTGGGATCAGCATCAAGGGTGATAAGGGTAACACAGGGCAACCGGGTTTGCCTGGACTGATGGGATTTCCAGGAGTTGGGCTCCAGGGTGAAAAGGGAGACCCAGGACCCATAGGACCATCTGGCCCAAGAGGCCCACCCGGAGTGGGCATGGTGGGAACTAAGGGTGACCAGGGCTTTCCTGGAGAAACTGGATTGCAAGGTGAGAGAGGAATAGGAGAACCAGGACCAAAAGGAGAACCAGGCCCAGTCggagcacctggtattcctggTATCCCGGGTGAAGATGGGTCAGTGGGTCCAAAGGGTGAGACGGGTTTACCTGGTGCTCGAGGTCTAGAGGGCTCAGCCGGGAGAGGTATTCCTGGTGAGAAGGGGGACCGAGGGGACAGAGGATCTCGGGGTCTCCCAGGAAGTTCTGGAGCAGCGGGACCCCCGGGGGCAAAGGGAGAACCAGGACGTTTAGGTATGATGGGTTTACCAGGACCTCCAGGTCGAGGATTACCTGGTTCAAAGggagaGCCAGGACCTGCAGGCCCCCAAGGTCCTGTTGGAGAGCCAGGTGTCGGGACTACAGGCCCTAAGGGTGACAGAGGAAGTCCAGGGCCAGTGGGGCCACAAGGAATGAAGGGGGAAGGTTATCCTGGACCACAGGGGCTTCCAGGGTTGCCTGGGCAGTCCGGTGAAGTTGGGCCTGAAGGACAAGGAATTCCTGGACCAAAGGGAGACCGGGGCTCGCCTGGAGCAACGGGCCCTTCAGGGCCTCCAGGGATTGGACTGATGGGTCAAAAGGGTGCAGTGGGCCAGCCTGGTGCTCCTGGTCTTTCAGGACCTCCAGGAGAGGGAATTCAGGGACCCAAGGGAGATCCTGGGTTTCAAGGGACCCCTGGTCCTAGAGGGCCTCCAGGTGATGGTCTGCCTGGAGAGAAGGGTGACAGGGGCCTACCAGGTGAACGTGGAAGAAAAGGAGAGATAGGAGAACATGGAATGGCTGGACAAACAGGAGACAAGGGAAAACCAGGAGAGAAGGGAGAGCCCGGCCTATCTAGAGACCAGGTGATCAGAATAATCCGGGAAATATGTGGATGTGGTCTGAAATGCAGGACAAGCCCTCTGGAGCTGGTCTTTATCATCGACAGCTCAGAAAGTATAGGTCCGGAGAACTTTGAGCTGGTGAAGGATTTCGTGAACGGTCTGATCGATCGTGTGTCCGTGAGTCATGAAGCCACGCGTGTCGGGGTGGTTCTCTTCAGTCACATGGACGTGGTGGTGACCAGCCTACAACAGCTGTCCGACCAGGCAAGTATTAAAGCTGCTGTGCGCAGGATGCCGTACCTGGGCGAGGGCACCTTCACGGGCAGCGCCATCCGTCGGGCCACTCAGCTCTTCAGAGCAGCCCGGCCGGGCGTAAGAAAGGTCGCGGTGGTGCTGACGGATGGTCAGGCTGACAAACGGGATGCAGTGAGGCTGAAAGATGCTGCAGAAGAGGCTCACAGTGCTGGGATTGAAATCTTCGTGGTGGGCATCGTGAACAGCAGTGACGCCCAGTATGCAGAGTTTAAAAACGAGATGAACATTTTGGCATCTGAGCCTGACGAAAGCTATGTCTACTTGATTGATGACTTCATGAGCCTGCACACACTGGAGAGTAAACTGCTGAGTCAGATCTGTGAGAGCGTTGACGGACCGCTCTTCAGTCAGAATGGCAAAACATTCCCTCCATTTGAGCCTGAGCCGGTTCCAGACAGAACTGAGGTTCCCACCAGGAGTTATTTCATCACAGAGGGCAAAgagGATGCACTTCCAACTGAGTTTGAGACCACTTCTTCTCCAGACGACTATGATgatatgcatattaataacaACTGGACGCCCTTTGTTGATGGGTCTTTAAATGAGCTTCCTAAGGTGACAGATGCGCCTGCTGGAGATAAGACGAGACAATCCTCCATCTCAGTTGTGGGACCCCAGACACCCATAAACTGGCGGCCTGCTCCAGAAATCGGCCCACCTCCTCGAACTCTACCTCCACCGGCCCCTCAGCCAAACAATTTCATGAAAGAGGTAGGCTGTAGGCAGGGATTGGATCCTGGGCCGTGTCGGGAGTACAGGGTGATGTGGTACTACGACCCGGAGGCCAACGCATGCGCACAGTTCTGGTACGGTGGCTGCCAGGGGAACAGCAACCGCTTCGAGACGGAAGACCTCTGTCAAAACACTTGTGTCCAGACATAACATACCCTCAGAGGGCTTCATTCAGCAGATTCACATCAAGCTGTGTCGACGCTGCATTCATGCACTATGCAGATACATTTTCATTGGCGTACATGTGTTTTACGAGAACAGTAAGGATTCCTGCTACACTGACTGTAGATCAGATATGTCCTTTGGGTCAACGCTATTTTAAATATCGTTTACTAGACTAGTGCTGCTCCATTTTCTAGAAAATAACATGTATATTCAAAGTAGCACATTTTTTCCTAGTCGCactgaatgttttacaaattcatttattttttaatattccttCCATAGAAATagtaaatatttctgttaattgtgagttctgttaaaggaatagttcacccccaaaatGAGAATTTGCTGACAATTTAATCATCCACcaggccatccaaaatgtagatgagtttgtttcttcaaatgCAGTGgtattacatc

Function

symbol description
col28a1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Located in collagen-containing extracellular matrix.

NR:

description
PREDICTED: collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218150.1 True 3966 mRNA 0.54 34 5725368 5739185

Neighbor

gene id symbol gene type direction distance location
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding upstream 7687 5716696 ~ 5717681 (+)
LOC122323266 NA coding upstream 111238 5613068 ~ 5614130 (+)
LOC122323836 LOC107598234 coding upstream 154097 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 192481 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 224772 5484922 ~ 5500596 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 136865 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 322364 6061549 ~ 6162543 (+)
mylipa mylipa,LOC107754815,LOC107694366,LOC107584315,LOC107731572 coding downstream 494840 6234025 ~ 6252339 (+)
npr1a npr1a,npr1,LOC107694365,LOC107677481,LOC107754786,LOC107731544,LOC108435512 coding downstream 527198 6266383 ~ 6344260 (+)
ints3 ints3,LOC107754816,LOC107584314,LOC107731564,LOC107694364,LOC107677482 coding downstream 607604 6346789 ~ 6361192 (+)
G130861 NA non-coding upstream 50524 5674295 ~ 5674844 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding upstream 54836 5659533 ~ 5670532 (+)
G130855 NA non-coding upstream 92940 5614264 ~ 5632428 (+)
LOC122324017 NA non-coding upstream 113030 5610988 ~ 5612338 (+)
G130835 NA non-coding upstream 137853 5565380 ~ 5587515 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 49381 5788566 ~ 5924971 (+)
G130899 NA non-coding downstream 59326 5798511 ~ 5934717 (+)
G130893 NA non-coding downstream 183847 5923032 ~ 5953470 (+)
G130891 asns,LOC107754811,LOC107672863,LOC107731557,LOC107702657 non-coding downstream 191667 5930852 ~ 5932842 (+)
G130940 NA non-coding downstream 428441 6167626 ~ 6169359 (+)
LOC122324139 LOC107598234,LOC107672810 other upstream 139713 5583505 ~ 5585655 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 411190 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 497142 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 545691 5176270 ~ 5179677 (+)
G130637 NA other upstream 561969 5162586 ~ 5163399 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 6616 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 45945 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 632650 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 723898 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 780735 6519920 ~ 6526080 (+)

Expression


Co-expression Network