si:ch211-288g17.4 (LOC107693284,LOC107724121,LOC107589401)


Basic Information

Item Value
gene id si:ch211-288g17.4
gene name LOC107693284,LOC107724121,LOC107589401
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17649882 ~ 17656526 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218171.1
TTTGCACACAGATGAAAGTTCACGTCAATAGATTACAGCTTTTTCCTCCTGATGTTTAAGTCGTGAATATGTTGTGATCTCTTTCTGTTATTTCGTTTTTGTTCAGGGAAAGAAACAACAATGAATAAGTCACTAGCTTTCTTAATCTTAGCTGTTCTGCTGTTTAAAGaggTGGAAAGCGTCAGCCTAAAAGAAGATTATGAAATGGCAGATAAACTCTTCACGTTGGGAGCTGAAGCATTTTGAAAAACTTGGACAATTTAAAAGGGGCTGCAGAAGCggttctgaaagaaaaaaagttcaaaaaaacaGGCACTGATATGCAAGACTTGTGGATTTCCGTGAAGGAGATGATCGAGAAGATTAGTGCTGAGCAAAGAGCTGCGGGACACGATCCGTTCATCGTGTCGCTGCAcaTTTTTCAAAGACTGGGCAGCCTTTGCGGTGACGGTCTGAATCGACTGATAAACACGTTCCCTAGGAACAGAGACACTGTGCAAGAAATTGGCATGTATAAAGGAATATTCAAAAACGAGACATTGGTGGACCTCTggaaatATGTGGAGTCCCGCTACCTTCCAGGAGCTCCACCGATCTACAGCCATCCCTTGGGCTTCTTCGCCCACCTTCTGTCCAAAGTGGTGGCACAGCCCCAAGTGGTTGAGGTCCTAAAAGTTGTGGCCGAGGTTGGGAAGACAGACATCAGTCAACTTTTTGACGAtgtaCAAACGGCAGTGGACATGCTCAGAGAGAAGATCATGGAAATTTCCTCCATAGAGAAGGAGAGCGAGAAGGATGAGTTTCTAATAACATTGAGAACTGCATCCGGAGTTCTTGCATTTTACTGGGATAAACTACTGGATTACACTGAGAGCCAGCCATTCCACAACAAATATTTAACTGCTGTAAAGAGATGGAAAGAGCTGAGAGTGTTGAAAGATACAGAAAAATATCACACGTTTATTAGCCCAGAGACAGGACTTCAAGCCTGGACTTGGGCGGACGAGCGGTTTGGTGATTTGTTTGACAATGCTGCCCTAGAATATGATCGGTGGGGTAATGGGGTTTTTGGAGATGAGAGATTCAATCAATCTAACTGGGCCATTGTGAAGATGGCGACAGTATACCCTCTTCCATTTTATGAAAGATTGTCTGAAAATGGCCTTGGGATGTCTGAagttaatgatttttttattgacactgaagacactCTCACTGAATTAGTAGGCAAGGACATCTTGTCCAATTTAAAGGGTGCGCTTTATGAAATGTGGAATATTATTAGTAATGAAATTTTTCATGTCTCCATAAACAAGAAAAACCAAATTACATCAAATGTGAAATATGAGGACCAACTGCAACATTTACGCAAAATTAAAGCAACATGCTTTGATATTTGGGACAGAGTTTTCATTGAGATCAACAGAAATATTAACAACGACGGACTTGAACAATCGTCAAGGCACTGGGATGAAGTGCAGAGCATTTTTATGAAAGAGTTAACTGACAGTGGACAGCTAACTCAGAAGAAGCTTGAGGAAGCACAAAAaacctttaacagtTTCACACAAATGGTCTTGGACAAGTATGTAAAAACGATTGATGGTCTGGAGGAAAGGATCAGAGCTTCCACAGAAACTCTTAGCAAATTGATGCTGAAGACGTTTTCTGCTACAAATAATGTCCTGGTTAATACTCTGCCCTTTCTGCTCTCTGattaattttaagataaaaacTGTATTCAGTTCTAAATTCTTTTGTCATTCTGTGACCCATGAATAATCCTTGTACTTctccttcttctctttctcctaTATTTGCTGAAGTTGTTTGATTGGAATGCTAATAGTGATGGCCCTTTCTTACTTTTGTTAAATTCTACACGGTTTATGCAGTTATGTGGAAATCACTTGTGATAAACTCTGAGCCGTTAGCTTCGTGATATCATTGTGAGGAAGTTTTCTGTACCCTTACCCTTCTTTAAAAATGCTCACCTTCAGGCCATGCATCATGTAGATGAGTTTCTTCATTTAGCATACAACACTTTCTCACCTACAGttcctctgaagtgaatgggtgccgtcggaattagagtgcaaacagctgataaatcatcacaataatccacaccactccagtccaacaattaatgtcttgtgaagtgagaAATAAATCCATCACTAAGGCTTGCCAAAA
>XM_043218172.1
GTTTGCACACAGATGAAAGTTCACGTCAATAGATTACAGCTTTTTCCTCCTGATGTTTAAGTCGTGAATATGTTGTGATCTCTTTCTGTTATTTCGTTTTTGTTCAGGGAAAGAAACAACAATGAATAAGTCACTAGCTTTCTTAATCTTAGCTGTTCTGCTGTTTAAAGCACTGATATGCAAGACTTGTGGATTTCCGTGAAGGAGATGATCGAGAAGATTAGTGCTGAGCAAAGAGCTGCGGGACACGATCCGTTCATCGTGTCGCTGCAcaTTTTTCAAAGACTGGGCAGCCTTTGCGGTGACGGTCTGAATCGACTGATAAACACGTTCCCTAGGAACAGAGACACTGTGCAAGAAATTGGCATGTATAAAGGAATATTCAAAAACGAGACATTGGTGGACCTCTggaaatATGTGGAGTCCCGCTACCTTCCAGGAGCTCCACCGATCTACAGCCATCCCTTGGGCTTCTTCGCCCACCTTCTGTCCAAAGTGGTGGCACAGCCCCAAGTGGTTGAGGTCCTAAAAGTTGTGGCCGAGGTTGGGAAGACAGACATCAGTCAACTTTTTGACGAtgtaCAAACGGCAGTGGACATGCTCAGAGAGAAGATCATGGAAATTTCCTCCATAGAGAAGGAGAGCGAGAAGGATGAGTTTCTAATAACATTGAGAACTGCATCCGGAGTTCTTGCATTTTACTGGGATAAACTACTGGATTACACTGAGAGCCAGCCATTCCACAACAAATATTTAACTGCTGTAAAGAGATGGAAAGAGCTGAGAGTGTTGAAAGATACAGAAAAATATCACACGTTTATTAGCCCAGAGACAGGACTTCAAGCCTGGACTTGGGCGGACGAGCGGTTTGGTGATTTGTTTGACAATGCTGCCCTAGAATATGATCGGTGGGGTAATGGGGTTTTTGGAGATGAGAGATTCAATCAATCTAACTGGGCCATTGTGAAGATGGCGACAGTATACCCTCTTCCATTTTATGAAAGATTGTCTGAAAATGGCCTTGGGATGTCTGAagttaatgatttttttattgacactgaagacactCTCACTGAATTAGTAGGCAAGGACATCTTGTCCAATTTAAAGGGTGCGCTTTATGAAATGTGGAATATTATTAGTAATGAAATTTTTCATGTCTCCATAAACAAGAAAAACCAAATTACATCAAATGTGAAATATGAGGACCAACTGCAACATTTACGCAAAATTAAAGCAACATGCTTTGATATTTGGGACAGAGTTTTCATTGAGATCAACAGAAATATTAACAACGACGGACTTGAACAATCGTCAAGGCACTGGGATGAAGTGCAGAGCATTTTTATGAAAGAGTTAACTGACAGTGGACAGCTAACTCAGAAGAAGCTTGAGGAAGCACAAAAaacctttaacagtTTCACACAAATGGTCTTGGACAAGTATGTAAAAACGATTGATGGTCTGGAGGAAAGGATCAGAGCTTCCACAGAAACTCTTAGCAAATTGATGCTGAAGACGTTTTCTGCTACAAATAATGTCCTGGTTAATACTCTGCCCTTTCTGCTCTCTGattaattttaagataaaaacTGTATTCAGTTCTAAATTCTTTTGTCATTCTGTGACCCATGAATAATCCTTGTACTTctccttcttctctttctcctaTATTTGCTGAAGTTGTTTGATTGGAATGCTAATAGTGATGGCCCTTTCTTACTTTTGTTAAATTCTACACGGTTTATGCAGTTATGTGGAAATCACTTGTGATAAACTCTGAGCCGTTAGCTTCGTGATATCATTGTGAGGAAGTTTTCTGTACCCTTACCCTTCTTTAAAAATGCTCACCTTCAGGCCATGCATCATGTAGATGAGTTTCTTCATTTAGCATACAACACTTTCTCACCTACAGttcctctgaagtgaatgggtgccgtcggaattagagtgcaaacagctgataaatcatcacaataatccacaccactccagtccaacaattaatgtcttgtgaagtgagaAATAAATCCATCACTAAGGCTTGCCAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107693284

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218171.1 True 2196 mRNA 0.40 17 17649882 17656525
XM_043218172.1 False 2053 mRNA 0.40 16 17649882 17656526

Neighbor

gene id symbol gene type direction distance location
si:ch211-288g17.3 LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507 coding downstream 37615 17607953 ~ 17612267 (-)
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding downstream 71893 17554552 ~ 17577989 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding downstream 115774 17526412 ~ 17534108 (-)
cacng6a cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581 coding downstream 157147 17484946 ~ 17492735 (-)
rcvrn3 rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570 coding downstream 369014 17274717 ~ 17280868 (-)
si:rp71-15k1.1 NA coding upstream 1533 17658059 ~ 17662089 (-)
kmt2ba LOC107724085,LOC107693264,LOC107589473,LOC107739503,LOC107665484,LOC107599517 coding upstream 6464 17662990 ~ 17685921 (-)
ndufv1 ndufv1,LOC107693353,LOC107589403,LOC108437925,LOC103023083,LOC107599567 coding upstream 32139 17688665 ~ 17694766 (-)
hcn3 hcn3,LOC107693352,LOC107724094,LOC107589404,LOC107739502,LOC107656480,LOC107599514,LOC108437924 coding upstream 39444 17695970 ~ 17706893 (-)
si:ch211-81a5.8 NA coding upstream 51488 17708014 ~ 17710108 (-)
G134252 NA non-coding downstream 4249 17620174 ~ 17645633 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding downstream 55558 17589996 ~ 17594324 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding downstream 304666 17325331 ~ 17345216 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding downstream 360502 17287667 ~ 17289380 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding downstream 381834 17265664 ~ 17268048 (-)
G134272 NA non-coding upstream 132501 17789027 ~ 17789326 (-)
G134273 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 non-coding upstream 133025 17789551 ~ 17798825 (-)
G134299 celf3a,LOC107693341,LOC107739496,LOC107589410,LOC107750801 non-coding upstream 195646 17852172 ~ 17857186 (-)
G134298 NA non-coding upstream 212605 17869131 ~ 17871956 (-)
G134309 trim46b,LOC107678799,LOC107599500,LOC108241966 non-coding upstream 282421 17938947 ~ 17947834 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other downstream 33605 17613446 ~ 17616277 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 315648 17330697 ~ 17334234 (-)
G133949 NA other downstream 365138 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 431092 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 749106 16900705 ~ 16900776 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 273163 17929689 ~ 17935436 (-)
G134318 NA other upstream 354356 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 512997 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 569083 18225609 ~ 18241613 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other upstream 1030823 18687349 ~ 18691249 (-)

Expression


Co-expression Network