st3gal1 (LOC107665130,LOC107727731,LOC107549887)


Basic Information

Item Value
gene id st3gal1
gene name LOC107665130,LOC107727731,LOC107549887
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 19703796 ~ 19714904 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218173.1
TGCAAATGCTCACAATGATCCAGAATCAGgtgTAGGTTTCTAAACGCTCTTCAGCCGGTTGAAAATATGGTTCTCTTCGTTAAACGGAGGACTTTGTGCATCAGGGCGCTCTTCACAATCGGcatcttctttctttgcgtGCTCTTCCAAAACGCACTGATCCACCCTTTCCTCAAAACATCCGTCGATTTCCCCGGCGGAGGTCTGTGCGCTTGCGATAAATGTGTGACGGATCTGAACGACACCGATTGGTTCTTCACGCGGTTCAACCCCACTGTTCCGTTTCTCCTGAACAGAAGAAACAGTGCGTTACGGCCAGACGTCTACAGATGGTGGAAGGGTCTACAAAGGGAGACCTTTAACGTTAGCTACACGGAGGTGGTGGATCAgatgttttctctctttcctgaTGAAGAGCACTACTCGGACGCCGGTCCCGATCGCTGCAGAACCTGCGCTGTGGTGGGAAACTCTGGGAACCTCCTGAGATCCAATTATGGTCCTCTGATAGATCTTCATGACGTTGTCATAAGGATAAACAGGGGTCCAACAAAAGGTTATGAGAAGGATGTGGGGTCAAAGACCACTCACCGGATTCTCTACCCTGAGAGTGCCGTGGATTTAGAAAACTCAACCCACCTTGTTCTTCTGCCCTTTAAGATCAAAGACATGCGCTGGCTCGTCAGTGCCTTCACCGCTAGACAGATCACTCGCACTTACATTAGAGTGAGATCTACAGTAAACGCTAACAAAGACAAGGTGATGATCATCCATCCTGAATTCATTAAATATGTCTATGAGAGCTGGCTCCAGAAACACGGCAAATACCCATCCACTGGATTCATTACACTGATATTCGCTTTGCACGTCTGTGATCAGGTCGATGTTTTTGGGTTTGGAGCTACAGATGCCGGGATCTGGCATCATTATTTTGACAGGAGCTTGACTTACTTTAACAGAGGCAGTCACGGCGGTGACTTTGAAAATAAGACCATAAATGAGCTCCTATTGTTAAACAAGATTTCTATACATAAAGGGTGGTAAAAATCCTTGTGTCTGTGGTGCAGGCTTTTAATGAAACTGCTTGAAAAGCCTgcattttcaaaacagaaatatgtatttattcgTTGTTGTTAATGGGGGGGGGATTAGAAACGACTAAGAAATTGTACTgtgaggaaaataaataaatagatattcaATTGCGCCTGGTATGCAAACTATGCTTTAAACAAAACccttttaaatgtatactttaaTACTACAGTTATGCATATTAAGTTAACTATTAAAGTATTTTCCATCAaacattactaaatattttcacatgacacttaaattgtatttctgtatttgtaagAAAATGTTAAGTGTTGGTTATTCACActgaagtatttaaaaaaaaaaaaaaaaaaaagatgtggaTCCTATGGACATTCCCCATGATCACTGTCTTTGTCTAATACAAGTAATGATGTGTCTCACCCGAGTGCAAAGAAGCAGAAGAGCTATCAGACAAAACTGACAATTACATAAAGGATAGCTGTTATCAGAAACCATTTATCGCTGCCGACCTGTTTGCCTTGCATTATCTTAAGCAGTAAATTATGCTGCGTGTGTCAATGTCTACTACATTTTTCGTCAGGCTACACCTAAAAGCTTTGTGTCGTGACTCTTAAACATAAAAGATGTGACGTGTGTGTCTGCATCTTTGTAAATCCCGTAGCTTTCAATAGC
>XM_043218175.1
TCTGATTAATGCTTTTTGTCCATATTCACCTTTCCAAACAAGCAGgtgTAGGTTTCTAAACGCTCTTCAGCCGGTTGAAAATATGGTTCTCTTCGTTAAACGGAGGACTTTGTGCATCAGGGCGCTCTTCACAATCGGcatcttctttctttgcgtGCTCTTCCAAAACGCACTGATCCACCCTTTCCTCAAAACATCCGTCGATTTCCCCGGCGGAGGTCTGTGCGCTTGCGATAAATGTGTGACGGATCTGAACGACACCGATTGGTTCTTCACGCGGTTCAACCCCACTGTTCCGTTTCTCCTGAACAGAAGAAACAGTGCGTTACGGCCAGACGTCTACAGATGGTGGAAGGGTCTACAAAGGGAGACCTTTAACGTTAGCTACACGGAGGTGGTGGATCAgatgttttctctctttcctgaTGAAGAGCACTACTCGGACGCCGGTCCCGATCGCTGCAGAACCTGCGCTGTGGTGGGAAACTCTGGGAACCTCCTGAGATCCAATTATGGTCCTCTGATAGATCTTCATGACGTTGTCATAAGGATAAACAGGGGTCCAACAAAAGGTTATGAGAAGGATGTGGGGTCAAAGACCACTCACCGGATTCTCTACCCTGAGAGTGCCGTGGATTTAGAAAACTCAACCCACCTTGTTCTTCTGCCCTTTAAGATCAAAGACATGCGCTGGCTCGTCAGTGCCTTCACCGCTAGACAGATCACTCGCACTTACATTAGAGTGAGATCTACAGTAAACGCTAACAAAGACAAGGTGATGATCATCCATCCTGAATTCATTAAATATGTCTATGAGAGCTGGCTCCAGAAACACGGCAAATACCCATCCACTGGATTCATTACACTGATATTCGCTTTGCACGTCTGTGATCAGGTCGATGTTTTTGGGTTTGGAGCTACAGATGCCGGGATCTGGCATCATTATTTTGACAGGAGCTTGACTTACTTTAACAGAGGCAGTCACGGCGGTGACTTTGAAAATAAGACCATAAATGAGCTCCTATTGTTAAACAAGATTTCTATACATAAAGGGTGGTAAAAATCCTTGTGTCTGTGGTGCAGGCTTTTAATGAAACTGCTTGAAAAGCCTgcattttcaaaacagaaatatgtatttattcgTTGTTGTTAATGGGGGGGGGATTAGAAACGACTAAGAAATTGTACTgtgaggaaaataaataaatagatattcaATTGCGCCTGGTATGCAAACTATGCTTTAAACAAAACccttttaaatgtatactttaaTACTACAGTTATGCATATTAAGTTAACTATTAAAGTATTTTCCATCAaacattactaaatattttcacatgacacttaaattgtatttctgtatttgtaagAAAATGTTAAGTGTTGGTTATTCACActgaagtatttaaaaaaaaaaaaaaaaaaaagatgtggaTCCTATGGACATTCCCCATGATCACTGTCTTTGTCTAATACAAGTAATGATGTGTCTCACCCGAGTGCAAAGAAGCAGAAGAGCTATCAGACAAAACTGACAATTACATAAAGGATAGCTGTTATCAGAAACCATTTATCGCTGCCGACCTGTTTGCCTTGCATTATCTTAAGCAGTAAATTATGCTGCGTGTGTCAATGTCTACTACATTTTTCGTCAGGCTACACCTAAAAGCTTTGTGTCGTGACTCTTAAACATAAAAGATGTGACGTGTGTGTCTGCATCTTTGTAAATCCCGTAGCTTTCAATAGC
>XM_043218176.1
TGCAAATGCTCACAATGATCCAGAATCAGgtgTAGGTTTCTAAACGCTCTTCAGCCGGTTGAAAATATGGTTCTCTTCGTTAAACGGAGGACTTTGTGCATCAGGGCGCTCTTCACAATCGGcatcttctttctttgcgtGCTCTTCCAAAACGCACTGATCCACCCTTTCCTCAAAACATCCGTCGATTTCCCCGGCGGAGGTCTGTGCGCTTGCGATAAATGTGTGACGGATCTGAACGACACCGATTGGTTCTTCACGCGGTTCAACCCCACTGTTCCGTTTCTCCTGAACAGAAGAAACAGTGCGTTACGGCCAGACGTCTACAGATGGTGGAAGGGTCTACAAAGGGAGACCTTTAACGTTAGCTACACGGAGGTGGTGGATCAgatgttttctctctttcctgaTGAAGAGCACTACTCGGACGCCGGTCCCGATCGCTGCAGAACCTGCGCTGTGGTGGGAAACTCTGGGAACCTCCTGAGATCCAATTATGGTCCTCTGATAGATCTTCATGACGTTGTCATAAGGATAAACAGGGGTCCAACAAAAGGTTATGAGAAGGATGTGGGGTCAAAGACCACTCACCGGATTCTCTACCCTGAGAGTGCCGTGGATTTAGAAAACTCAACCCACCTTGTTCTTCTGCCCTTTAAGATCAAAGACATGCGCTGGCTCGTCAGTGCCTTCACCGCTAGACAGATCACTCGCACTTACATTAGAGTGAGATCTACAGTAAACGCTAACAAAGACAAGGTGATGATCATCCATCCTGAATTCATTAAATATGTCTATGAGAGCTGGCTCCAGAAACACGGCAAATACCCATCCACTGGATTCATTACACTGATATTCGCTTTGCACGTCTGTGATCAGAGTCTTCCACACcccgaaaaaaaaagaagttgtttGTGACGACCTGAGCAACATACCAAACCACTTTCGGGTCGCCCGCACAAATAGAGATTTATGGAATGTTCACTAACCACACGCATGCACacgcacatgcaaacacacacacacaaaaagtactAATCACAGGTAATAAGTCAAAGAAGCTCAAAATCTGCATCACTGTGGATTCATTCTTGCACATCACTTATGCACATCAGCATAACACTTcaattacatacaaaaaaatgcctCAGGGTGTTTTTTGAAATAGATTGAGCTTGTAGTTTTTCAAGTGTCagtttcctatttttttttttttaaactttatgcacttttaaataCATGTCTATGCACAACATATTGATCAGCATTTTTGCTCTAAATGCAGCGAGATACAATTAAAGGGATACAATTTTTACTATTGGGTTTCTACTATCAGTTTCTCACcctcacgttgttccaaacgcgtatacatttctttcttctgtttaacaaagaagatattttaagaatatcGGTTACCATTTAGTTCCCCATTGACACCGACAGTATTTTTTCCTCTAACAAACCGTTTATGCCATTGACTTCTATATTAGTAAATTAATGCtcaatttaatatattccaGAAACGTTTTTGTTaccaacgttcttcaaaatatcttttgcgTTCGACGTTTGAAACAAGATGAATGTggagtaaaattacaaaaaaaaaatatcacttttcGTTAAAAGCATTCATAGACACACAGttgaaaagacaaaacaaatggaATGTTATTTTTCCATGAAACTATTTGACCAAATACAAAGCAAGAGTGCAAAAGGGCAGTATTTGTGGCCAAATAGCTAGCACGAACAACAGTGAGGTAAATGCTTTCATAACGATACAGATTTCAAGGGATTCCCAAAATTTCAATACCTCGTTTTG

Function

NR:

description
PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like isoform X4

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218173.1 False 1737 mRNA 0.42 7 19707805 19714904
XM_043218175.1 False 1753 mRNA 0.41 7 19707805 19712668
XM_043218176.1 True 1828 mRNA 0.41 7 19703796 19714904

Neighbor

gene id symbol gene type direction distance location
LOC122323475 LOC107669946,LOC107554574,LOC107727308,LOC108274547 coding downstream 295144 19380778 ~ 19408652 (-)
rragcb rragcb,LOC107669953,LOC107727266,LOC107551762,LOC107681629,LOC107700741,LOC107730935 coding downstream 615013 19081572 ~ 19088783 (-)
fhl3b fhl3b,LOC107734040,LOC107551770,LOC107681628,LOC107669956,LOC107727270 coding downstream 623119 19063845 ~ 19080677 (-)
stpg1 stpg1,LOC107669955,LOC107734031,LOC107559684,LOC107727365,LOC107681611 coding downstream 669492 19029360 ~ 19034304 (-)
LOC122323972 map7d1,map7d1b,LOC107681622,LOC107734037,LOC107551771,LOC107669943 coding downstream 678461 18990232 ~ 19025335 (-)
fbxl20 fbxl20,LOC107666314,LOC107727724,LOC107665129,LOC107563017,LOC107549884 coding upstream 216077 19930981 ~ 19947690 (-)
chd4a chd4a,LOC107748913,LOC108433757,LOC107549834,LOC107086130 coding upstream 290391 20005295 ~ 20029751 (-)
tpi1a tpi1a,LOC107754015,LOC107666351,LOC107665177,LOC107727722,LOC107563024,LOC107549875,LOC103040446 coding upstream 331662 20046566 ~ 20052298 (-)
gnb3b gnb3b,LOC107665150,LOC107727720,LOC107753988,LOC107666347,LOC108433753,LOC107563025 coding upstream 339365 20054269 ~ 20058841 (-)
stx1b stx1b,LOC107666328,LOC102220115 coding upstream 369278 20084182 ~ 20121636 (-)
LOC122324126 NA non-coding downstream 175093 19497954 ~ 19528703 (-)
G134675 NA non-coding downstream 210764 19492535 ~ 19493032 (-)
LOC122323683 NA non-coding downstream 282324 19414899 ~ 19421472 (-)
G134632 NA non-coding downstream 439499 19262718 ~ 19264297 (-)
G134592 NA non-coding downstream 645833 19047521 ~ 19057963 (-)
G134758 NA non-coding upstream 130992 19845896 ~ 19846359 (-)
G134760 NA non-coding upstream 173716 19888620 ~ 19888828 (-)
G134757 LOC107665134 non-coding upstream 209801 19924705 ~ 19969715 (-)
G134761 NA non-coding upstream 329016 20043920 ~ 20056860 (-)
G134804 LOC107727707,LOC107665118,LOC107549831 non-coding upstream 426605 20141509 ~ 20141876 (-)
LOC122324012 NA other downstream 15410 19670787 ~ 19688386 (-)
khdrbs3 khdrbs3,LOC107554584,LOC107566726,LOC107687064 other downstream 50989 19542782 ~ 19652807 (-)
smim13 si:dkey-206d17.5,LOC107669968,LOC107559689,LOC107551766,LOC107734024,LOC106589022 other downstream 770568 18876614 ~ 18933228 (-)
LOC122324083 LOC107589493,LOC107693246,LOC107734014 other downstream 1012547 18687349 ~ 18691249 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other downstream 1462183 18225609 ~ 18241613 (-)
G134895 NA other upstream 667116 20382020 ~ 20382727 (-)
G134944 LOC107756202,LOC107600825,LOC107689598 other upstream 734649 20449553 ~ 20451196 (-)
G134948 zgc:162872,LOC107756215,LOC107692254,LOC107600823 other upstream 748045 20462949 ~ 20468681 (-)
G134949 LOC107670072,LOC107756217 other upstream 755316 20470220 ~ 20473163 (-)

Expression


Co-expression Network