Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000001_06718133_06747744 |
| gene name | KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 6717159 ~ 6747744 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| kcnab2b | Predicted to enable aldo-keto reductase (NADP) activity; potassium channel regulator activity; and transmembrane transporter binding activity. Acts upstream of or within regulation of action potential and regulation of transmission of nerve impulse. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in juxtaparanode region of axon. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in Mauthner neurons. Orthologous to human KCNAB2 (potassium voltage-gated channel subfamily A regulatory beta subunit 2). |
| kcnab2a | Predicted to enable oxidoreductase activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in several cellular components, including axon; cytoskeleton; and synapse. Predicted to be integral component of membrane. Orthologous to human KCNAB2 (potassium voltage-gated channel subfamily A regulatory beta subunit 2). |
| kcnab2 | Enables potassium channel regulator activity. Involved in regulation of potassium ion transmembrane transport. Located in juxtaparanode region of axon and membrane. Part of voltage-gated potassium channel complex. |
| id | name | namespace |
|---|---|---|
| GO:0004495 | mevaldate reductase activity | molecular_function |
| id | description |
|---|---|
| K04883 | KCNAB2; potassium voltage-gated channel Shaker-related subfamily A, beta member 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000001_06718133_06747744.mRNA | False | 2123 | mRNA | 0.49 | 14 | 6717159 | 6747744 |
| TU18214 | True | 8620 | lncRNA | 0.36 | 2 | 6723809 | 6732925 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_06700913_06706131 | NA | coding | upstream | 10736 | 6700811 ~ 6706423 (+) |
| CI01000001_06583486_06641365 | PAX7, PAX7B, PAX7A | coding | upstream | 75794 | 6583486 ~ 6641365 (+) |
| CI01000001_06564886_06568295 | NA | coding | upstream | 148864 | 6564886 ~ 6568295 (+) |
| CI01000001_06541966_06547403 | NA | coding | upstream | 169414 | 6541966 ~ 6547745 (+) |
| CI01000001_06531852_06539325 | TTC34 | coding | upstream | 177666 | 6531852 ~ 6539493 (+) |
| CI01000001_06825263_06835397 | EMC1 | coding | downstream | 77519 | 6825263 ~ 6836463 (+) |
| CI01000001_06884020_06889266 | UBR4 | coding | downstream | 136276 | 6884020 ~ 6889992 (+) |
| CI01000001_06893068_06917387 | IFFO2A | coding | downstream | 145324 | 6893068 ~ 6917660 (+) |
| CI01000001_06921000_06929478 | TAS1R1 | coding | downstream | 173256 | 6921000 ~ 6930359 (+) |
| CI01000001_06939316_06939879 | NA | coding | downstream | 191489 | 6939233 ~ 6940705 (+) |
| G16284 | NA | non-coding | upstream | 43648 | 6672182 ~ 6673511 (+) |
| G16257 | NA | non-coding | upstream | 201761 | 6515121 ~ 6515398 (+) |
| G16247 | NA | non-coding | upstream | 283831 | 6433084 ~ 6433328 (+) |
| G16212 | NA | non-coding | upstream | 434607 | 6282339 ~ 6282552 (+) |
| G16193 | NA | non-coding | upstream | 490014 | 6226859 ~ 6227145 (+) |
| G16317 | NA | non-coding | downstream | 52424 | 6800168 ~ 6800381 (+) |
| G16937 | NA | non-coding | downstream | 188398 | 6936142 ~ 6946151 (+) |
| G16977 | NA | non-coding | downstream | 344009 | 7091753 ~ 7123993 (+) |
| G17019 | NA | non-coding | downstream | 404350 | 7152094 ~ 7152425 (+) |
| G15995 | NA | other | upstream | 1002208 | 5711885 ~ 5714951 (+) |
| CI01000001_05279884_05287123 | NA | other | upstream | 1427203 | 5279837 ~ 5287698 (+) |
| G15794 | NA | other | upstream | 1652455 | 5061218 ~ 5064704 (+) |
| CI01000001_03618075_03620436 | NA | other | upstream | 3095708 | 3618075 ~ 3621451 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 5046155 | 1667762 ~ 1671167 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 784828 | 7531541 ~ 7540586 (+) |
| G17234 | NA | other | downstream | 1284380 | 8032124 ~ 8032483 (+) |
| G17353 | NA | other | downstream | 2468278 | 9216022 ~ 9228859 (+) |
| G17354 | NA | other | downstream | 2486719 | 9234463 ~ 9240677 (+) |
| CI01000001_09435836_09436037 | NA | other | downstream | 2670584 | 9435836 ~ 9436373 (+) |
