marcksl1b (marcksl1,marcksl1b,LOC107745720,LOC107691511,LOC107584334)



Basic Information


Item Value
gene id marcksl1b
gene name marcksl1,marcksl1b,LOC107745720,LOC107691511,LOC107584334
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7761656 ~ 7764418 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043218199.1
ACTAGAACTGGTAGTAGTAGGTCGCCCTCGACGCTCACGGCTGGAAGACGAGAGTGGATCATCTCAAGTTTTCCtcataaagggaaaaaaaaaatcaccaactTTCCTGCGCCTTTGGATGCACGTTACGCCCGTTGGTCTGGATTATTTTTCCCCCACCTACCTGAATTTGAgttctttttaatttactttaaaaccaCATCAAGAATAATGGGATCCCAGGCATCAAAGGGAGGAGTGGCTGTGGAGGGGAAAGCCGCCGATGCTGACCCGGCTGCCGTCAAGACTAACGGACAGGAGAACGGCCACGTGAAGACCAACGGCGACGTCTCCGCCAAAGCTGAGGGGGACGCCGCCACCACCAACGGCTCCGCGGAGGCAGCCAAGGAGCCCGAGGCTGGAGCCGGCGACGCCATCGAACCCGCGCCCGCCGCCGAGGGCGAGGCCGCCAAACCTGAGGGTGAGCCCGCCAAGGAGACCcccaagaagaagaagaagaagttctCCCTGAAGAACTCCTTCAAGTTCAAGGGCATCTCGCtcaagaagaacaagaagagcGCCGAGGTGAAGGAAGAAGCCGCCGCAGCCGCCACCGAGGCCGCCCCCGCCGCCGAAGAGAAGCCCGAGGAGAACGAGGCGGCCGCCGCCGaggagaagaaggaggaggaggccAAGGCCGAGGAGACACCCGCCCCCGCCGAGACCCCCAAGGCCGAGGAACCCGCCGCCAAGGCCGAGGAGCCCGCTGCCCCCAAGGAAGAGGCTGCTGCACCTGCCGCAGAGCCCACAAAACCAACAGAGGAGACCAGCTCAACAACTGCACCATCCGAACAGAAGGAGTGATTGTACTTCACAAAGGACTTTGTGAACTGTTTTtccaagaaaaaatatatatttatatatatgtgtatatgtatacatatgtatatatacatggatatatgtatatgtatatatacacatgtatgtgaagaaaaaaaaagactcctCGTGCCACTTTCTTCAAGATTAATAACAAATGACAGACTAGATTCACTAGTTCACTTCCCTGATAATGGCTCAAAGATCCGGGATTCCGAGCGAAAGGCCAAAACCTCTTGGAAGCGGGATGTCAACGCAAGAGCGAGTTGAGGATGGGATCAAGGAGGAGCATCTTTCAAGCCCACCGCCGAATAGATGCGACTATATACCGATGAATTGCTCAAGATCAACATCACCACATATaatgactgttaaaaaaaaaaaaaaaaaggaaatcgaAAAAGACTTGCCAACTTTCTACATTCCTATATTTTAACCCAAATTTAAGTATTTTGTGGTGTATAGAGAACCATTTTAAATATCCAGAAGGCTTTGTCTCGTTTGTTTGAAAtcgcattttaattttcatcttggctttaaaaaaaaaaaaaacaaaacaaaataaaaacacatttgagctTGCTATGTTCACATTTGAAGTTTTAAAAGAAGCAGAGTTGTTatgtgttaaatgtgagcctTGATCTGCTTTTTGGTCTCTGTAAATACATTTGACcaattttgttctttattttgctAATGTTTAAAGATGTTACTGGTTTTATTGTAAAGTTGATAATGGTAAATAAATGTTGGTTACCTACA

Function


symbol description
marcksl1b Predicted to enable actin filament binding activity. Acts upstream of or within cartilage development; central nervous system development; and neural retina development. Predicted to be located in cytoskeleton and membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; and skeletal muscle. Orthologous to human MARCKSL1 (MARCKS like 1).
marcksl1 Predicted to enable actin filament binding activity and voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels. Predicted to be involved in actin filament organization and central nervous system development. Predicted to act upstream of or within positive regulation of cell population proliferation. Located in plasma membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043218199.1 True 1629 mRNA 0.47 2 7761656 7764418

Neighbor


gene id symbol gene type direction distance location
maco1a tmem57a,LOC107584286,LOC107687072,LOC107745723,LOC107709293,LOC107691503 coding upstream 171501 7581246 ~ 7590155 (+)
LOC122323846 adcy3,adcy3a,LOC107703925,LOC107688975 coding upstream 365931 7377754 ~ 7395725 (+)
LOC122323892 vars2,LOC107584340 coding upstream 385340 7356096 ~ 7376316 (+)
mrpl36 mrpl36 coding upstream 716695 7043439 ~ 7044961 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding upstream 723530 7033583 ~ 7038126 (+)
hdac1 hdac1,LOC107562876,LOC107745719,LOC107584281,LOC108272688 coding downstream 3905 7768323 ~ 7773781 (+)
tspan13b tspan13b,LOC107691547,LOC107584356,LOC107562755,LOC107687093,LOC108273354,LOC108433833 coding downstream 375276 8139694 ~ 8145071 (+)
mrps18b LOC107745713,LOC107687091,LOC107691521,LOC107584330 coding downstream 398552 8162970 ~ 8164866 (+)
c19h6orf136 si:ch211-215a10.4,LOC107745710,LOC107687086,LOC107691522,LOC107709275,LOC107562760 coding downstream 410947 8175365 ~ 8181443 (+)
fam49al fam49a,LOC103035846,LOC108257369,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC103143294,LOC101166565,LOC107687090,LOC108425450,LOC101064326 coding downstream 484445 8248863 ~ 8272642 (+)
G131341 LOC107687071,LOC107584285 non-coding upstream 183807 7445445 ~ 7577849 (+)
G131346 NA non-coding upstream 309415 7451646 ~ 7452241 (+)
G131339 e2f3,LOC107687070,LOC107745724,LOC107709295,LOC107691507,LOC107584335,LOC107562874 non-coding upstream 316576 7444602 ~ 7445080 (+)
LOC122323469 adcy2a,LOC107551198,LOC107664610,LOC100707801,LOC107574671,LOC102200234 non-coding upstream 318192 7428544 ~ 7443464 (+)
LOC122324170 NA non-coding upstream 373676 7384451 ~ 7387980 (+)
G131414 NA non-coding downstream 280098 8044516 ~ 8123838 (+)
G131420 NA non-coding downstream 331977 8096395 ~ 8145849 (+)
G131439 NA non-coding downstream 406839 8171257 ~ 8173047 (+)
G131442 NA non-coding downstream 419260 8183678 ~ 8184642 (+)
G131485 myclb,LOC107584272,LOC107709270,LOC107691528,LOC107687096,LOC107562763,LOC107724275 non-coding downstream 532340 8296758 ~ 8324739 (+)
G131351 NA other upstream 146368 7608940 ~ 7615288 (+)
ldlrap1a ldlrap1a,LOC107709294,LOC107691509,LOC107562879,LOC107687073,LOC107745728 other upstream 156430 7591514 ~ 7605226 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other upstream 306891 7451050 ~ 7454765 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other upstream 504004 7234471 ~ 7257652 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other upstream 694798 7046613 ~ 7066858 (+)
si:ch73-130a3.4 LOC107736638,LOC107584280,LOC107687100,LOC107584333 other downstream 20338 7784756 ~ 7786559 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 other downstream 606288 8370706 ~ 8375867 (+)
LOC122323856 LOC107745707,LOC107709282,LOC107691523 other downstream 1395952 9160370 ~ 9166094 (+)
si:ch211-215i13.3 LOC107579802,LOC107724304,LOC107702091 other downstream 1771900 9536318 ~ 9538502 (+)
G131801 trib1,LOC107724318,LOC107565192,LOC107702074,LOC107710180,LOC107556392,LOC107653840 other downstream 1872555 9636973 ~ 9638961 (+)

Expression



Co-expression Network