myclb (myclb,LOC107584272,LOC107709270,LOC107562763,LOC107691528,LOC107687096,LOC107724275)


Basic Information

Item Value
gene id myclb
gene name myclb,LOC107584272,LOC107709270,LOC107562763,LOC107691528,LOC107687096,LOC107724275
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8322649 ~ 8326971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218206.1
CTCGTTTCAGGTGTCCATAGTGAGCGCGAGCCGCGGCTTGAGCAGGGATAACACGGGAGCTATAAAACACGCAGAGAGAAGCGAACTCCTCGCGAAGAAGCGGACCGCAAACTAACGAACACCCTCGCAACTCAACTTAACGGATAGCGCGAGCGCAAGACCGGATTATCCAACGCGCGGCTGACGACGCTTTCTCAACTTGTTGACATGAGAGCTTTTCGTGCAAAACATTTCGCTGGAGCTCGCCGGTGAACCGCAACACCTTATTTTCGCGTCTCAAATGACACGCGACACACCGACTCCCGGCTCTGCGTTACGATCTTGATCTCCGAGGTGGCCACCAATGCCAGGAATCGGCGCAAACGCACCGCGAAATAAGAAGTGGGAGATGGAGGAATACGACCAGTATCAGCACTATTTTTACGACGACCTCAACTTGGACGAGGACTTCTTTTTCAAATCGACCGCACCAAGCGAGGACATTTGGAAGAAATTCGAGCTCGTGCCAACCCCGCCCATGTCGCCCGTCAGGACGCTGGAAGGGACCGCTCCATCTCCAGGGGACAGGCTGGAGTGGATGTCCCAGTTCTTGGGGCAGGACGACGAGCAGGAGGGGCAGTGCGAGCTGAACGCGGAGGAGACTCTGGAGAACTTGAGCTCCATCATCATTCAGGACTGCATGTGGAGCAGTTTCTCCGCCGGCCAGCAGCTGGAGAAAGTTGTGAGCGAGCGCCTGTCCTGCTCGGCGCAGTCGAAACTCTCCGGCAAGGCGCAGTGCGTCCCTGCGGACAGCAGCTTGGCGACAGATTGCGTGGACCCAGCAGCTGTCCTTACCTTCCCTCTGAGCAGCAGCTGCAAGAAACAGGTGTCATCCGGGTCAGAGTCTCGCACCGACTCCTCCGATGACGAAGAAATTGACGTTGTGACGGTGGAGCACAAGCAGAACAAGGCGCGTTTGGTGAACGCCCGTAAACCGGTGACCATCACGGTTCGCGCGGACCCCTATGACCCTTGCATGAAGCGTTTCCACATCTCCATTCACCAGCAGCAGCACAACTACGCCGCCCGCTCTCCCGACAGCTATCCCGAGGAGGAGCCTCCCCGCAAGAAGATCAGGCAAGAGACCTTACAGCCACGGCTGTGCTCCACGCCCCAAACCCCCGAAAGAAAGACGCCCTCACCTTCCCCCTCGGCTCCCACCCCGTCTCAGACTGCCTCCGCTTCTCCAACACACACGTCCTACCACTTCAAATCCCAACCGTCCAGCCCTCAGAGTTCGGACTGCGAGGACACGGACAAGCGGAAGACACACAACTTCTTGGAGCGGAAGAGACGCAACGACCTACGCTCCCGGTTTCTGGCCCTGCGGGATGAGATCCCAGGCCTGGTTGACTGTCCAAAGACGCCCAAAGTTGTGATCTTGACCAAGGCCACAGAATACCTGCGTGCGCTTCACGTCAGCGAAAAACAGAAGACCCAGGAGAAGAAGCAGCTGAAAAACAGGCAGCAGCAGTTACTGCGGAGACTCGCTGAAATGAAACGCGCATAATCCTTCATAGTCCAGCCATATTTTCAATAGAAACCCTGTAGAAGTCCTTGTTtcgttttggttttttttctaaagtggGATATTTAATGGAACGGACTCTGTGTTTTGAGATTAGTTCTTCAGTTTTTGTTCTTTGCACACTTGCCTTCGCAACACGGGGAGACGTACTTGTGGAACTGGTTCAAACATATTCCAAAGAGGGACATTATTTCTGGTTTCCATTTTGAAAATCGAAGATTTATACCATGAATGCGCGTTACCTTAAATTCGTGAAAGCTACGGTATTTGGGGCGGGGGAAGTACCTTTTCATTGAATTCGCATGCCAATTTAGGCATTATTTGAAATGTAGCaatttatatgcatgtgtaaCTGATTTTCTAAATCATCAAACCCCCGTTTCGTGGCGGGATCTTGAATCTATCtgggtaaataaatatatttaagggTCTTTGATCAATGTGACTTCTCCGTTAATAGTGCTTTATCGAAAATTCACCTAAATTAAAGGAGAGCTGTGTGCCCCCATTGCCACACGATGACGGTGTAAGTTTAACAGACAGGAAGTTGCATCACTGTTCCTTTTTGTTACattgtgttctttttttcttttttttgtctgttattgtatattattgttgttatctTGAACATTCAGGACAGTGTCCAGCACAGCCTTGCAGTGTATATTAACTGCGGCATATTCTTTGGACATATGTATATAATTGTAGTGGTGTACAGGACATTGTGTAAAAATACTTGCTCGTGTTTTGAATATGAAAATCAGCACTGTTAATAgactttattttctatttttctgtcAGTTGTCCTAAAACTTGGTTGGCCCACCTGCCTTCCCTAAGAGTATCtcaaagtttatatttttgttaagaaaagtaaaaaaaaaaatcaaaaagttaaataaaacgACACTatcaacatttcattttcatcacTAGCCACTTTATGCTGTTTTCACTGCCTGTTCCTTTTGTGTTCGGAAATTTCTTTGGCTTATTGCTTTTGTGGCAGGAAAGAATTTTGtactaattatattttcttacagaattaattgtatcattgtttgatttctatttaaatataaagttgtaCTGGTGGCATATGCTTGCTCCTCTCCAATCACGACCGTGGTAGTTTGAAGCTTATGCACATGGTCGCTactaatgcaattatttaaaaaaaaataaataaataaaagtaatgttgTACCTTCGGCTTTGAAATTGGCCAAAAGAGCAAAATATGCATAAGCCATCAGTAACccgttgttgttgctttttttttccactttggtCCCTTGTTGTCGGGTGTCATAATGGGAGAATGGCAGCAGCGTTGTCTAAGCACTTTGTGTTCTGTACCTCATAAGCCTATATACATAAActcaaaatttgaaaaaaaaaaaaaccaataaatTCAGTTCAAATCATAA

Function

symbol description
myclb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; pectoral fin; pectoral fin bud; pharyngeal arch; and presumptive neural retina. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

NR:

description
PREDICTED: protein L-Myc-1b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09110 LMYC, MYCL; L-myc proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218206.1 True 3000 mRNA 0.47 3 8322649 8326971

Neighbor

gene id symbol gene type direction distance location
hpcal4 hpcal4,LOC107562761,LOC107687092,LOC107691524,LOC102228321,LOC107745708 coding downstream 106666 8197711 ~ 8215983 (-)
bag6l LOC107687076,LOC107691523,LOC107745707,LOC107709282 coding downstream 126830 8182020 ~ 8195819 (-)
abcf1 abcf1,LOC107745711,LOC107687077,LOC107709273 coding downstream 148177 8164868 ~ 8174472 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107691520,LOC107745712,LOC107687078 coding downstream 160486 8150959 ~ 8162163 (-)
agr2 agr2,LOC107584355,LOC107687097,LOC107745729,LOC107562756,LOC107709281,LOC107691548 coding downstream 175164 8145636 ~ 8147485 (-)
kiaa1522 kiaa1522,LOC107724336,LOC107584271,LOC107709267,LOC107568804 coding upstream 49237 8376208 ~ 8412834 (-)
rbbp4 rbbp4,LOC107568807,LOC107709266,LOC107584269,LOC105015627 coding upstream 103710 8430681 ~ 8435138 (-)
bzw2 bzw2,LOC107724358,LOC107702135,LOC107709265,LOC107691535 coding upstream 109320 8436291 ~ 8449744 (-)
arl4ab arl4ab,LOC107702133,LOC107724349,LOC107584268,LOC107555559,LOC107709262,LOC107696203,LOC108425359 coding upstream 229929 8556900 ~ 8559488 (-)
scin scin,LOC107724348,LOC107702132,LOC107696204,LOC107709261 coding upstream 234406 8561377 ~ 8569332 (-)
G131508 NA non-coding downstream 39208 8283098 ~ 8283441 (-)
G131507 NA non-coding downstream 39825 8282601 ~ 8282824 (-)
G131506 NA non-coding downstream 42389 8279994 ~ 8280260 (-)
G131495 NA non-coding downstream 49846 8224819 ~ 8272803 (-)
G131501 NA non-coding downstream 73422 8248821 ~ 8249227 (-)
G131511 NA non-coding upstream 26562 8353533 ~ 8355117 (-)
G131654 NA non-coding upstream 214253 8541224 ~ 8555592 (-)
G131675 NA non-coding upstream 312457 8639428 ~ 8639657 (-)
G131697 NA non-coding upstream 593069 8920040 ~ 8920695 (-)
G131820 atxn1,atxn1a,LOC107696220,LOC107724277,LOC107743820,LOC107702111 non-coding upstream 712977 9039948 ~ 9048451 (-)
trit1 trit1,LOC107691527,LOC107687082,LOC107709271,LOC107562762,LOC107724344 other downstream 1748 8287145 ~ 8320901 (-)
khdrbs1b LOC107745714,LOC107691518,LOC107584277,LOC107687088,LOC107709277,LOC107562753 other downstream 193379 8118949 ~ 8129270 (-)
G131373 NA other downstream 717506 7602133 ~ 7605143 (-)
LOC122323248 LOC107687071 other downstream 870733 7445758 ~ 7451916 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other downstream 924703 7395180 ~ 7397946 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other upstream 327527 8654498 ~ 8659486 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other upstream 397535 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other upstream 400288 8727259 ~ 8738786 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other upstream 981749 9308720 ~ 9309352 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other upstream 1332385 9659356 ~ 9664459 (-)

Expression


Co-expression Network