LOC122324037 (syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084)


Basic Information

Item Value
gene id LOC122324037
gene name syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4990858 ~ 5010109 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218220.1
tcacacTCGCATCTggagcggaggaggaggaggaggaggagcgcaTCCTTAAGGAGCGCGCAGACACAGAAGAAAACATCCACAGCTCGGCCACCATTCAGCTGGAGGATCGGCCGGGACAAATTCatggaaataaaatagaaatccattccctttgcttttccttttttgttttctgatcACAGCCAAGCCACTGGACTCCAAAATGGCTGAGATGACTAATTTGAAACCAACCTACGACGTGTCCCCAGTGCTTGCGGGTTTTCTGGGTGCGGGGTCCTGGTCGCCTCCGTGTGGTGGCAGTGTTCCTCTGGACGCGTGCTGTCAGCGGCGATATCGTCAAATGACAGGCACGTACAAGCTGACCAGCGGCCCCTACGACCCCCCCGTCGACCCCCCCTACAAGTTCATCCACATGCTCAAAGGCATCAGCATCTACCCCGAGACCCTCAGCAACAGCAAGAAGATCGTACGGGTGGGCCGGCGCTCAGGATCGGGCTCGCTCTTGAGAGAATGGGCTCGTGGGTCCCGAAACGGAGACGTGCTTCTGGTGGATGCGGATCCTGAAGGTGGCTCCTCACACCTACAGATGAACCACTTGGTGCCGCCCATGGGACCTCCCAGACTGGAGAGGGCGCTGCCCATCCGGGCCGACTACTGCTGTATGGAGAGCAGCTCTGGAAGCAGCAGCGAGGCTCCGAGTAAGACGGCGTCGCCCCACAGTCTCAACTCCCCCTCTCTGGGCACGCTCAGCCTGGCCGTCGACTACAACTTCCCCAAGAAGGCCCTCGTGGTGACCATCGTAGGAGCGCAGGGGCTCCCTGCGGTGGACGAGCAGGCGGGCAGCTCCGACCCTTACGTGAAGATGACCATCCTGCCCGAGAAGAAGCACCGGGTGAAGACGCGCGTCCTGAGGAAGACTCTGGAGCCCGCGTTCGACGAGACGTTCACCTTCTACGGCGTCCCGTACAGCTCGCTGCCCGAGCTCACGCTGCACTTTCTGGTGCTCAGCTTCGACCGCTTCGCGCGGGATGATGTCATCGGCGAGGCGGTGGTGCCGCTGGTGGGCGTGGATCCCAGCACGGGACGGGCGCACATCACCCAGCAAATCAGCAAGAGGAACACGCAGTGTGAAAGTCGTGGGGAGTTGCTGGTCTCTCTATCCTACCAGCCTGTTACTCACAGGCTTAATGTGGTAGTCCTTAAGGCCAAACACCTGCCAACCATGGACATCACTGGCCTGTCAGGCAACCCTTATGTTAAAGTGAACGTCTTCTACGGCCGCAAGCGCATAGCCAAGAAGAAGACGCATGTGAAGAAATGCACACTCAATCCCGTTTTCAATGAGTCGTTTATCTATGATGTTCCCGCTGAGCTAATGCCGGACATCTCTGTGGAGTTTCTGGTCATTGATTTCGACCGCACCACGAAGAATGAGGTCGTGGGTCGCCTGGTTCTGGGTGGTCAGAGCCCTATCCCATCAGGGGTGACTCACTGGAGGGAAGTCTGTGACAACCCAAGGCGGCAGATCGCCAAGTGGCATAACCTTATAGAGTACTAGTGTCTGCCTAATGCGAGGGAAAAAGCGAAATGTATTATACCACTTCCTTCCTGTCAGCCCTGCTATAGAAAGAAGCCCATTTAACAATTTCTCCTTTTCCCTGTACAGATAGGTGTACGAGAGGATAAGTACGTGTGTCA

Function

symbol description
syt11a Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human SYT11 (synaptotagmin 11).

NR:

description
PREDICTED: synaptotagmin-11-like isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19911 SYT11; synaptotagmin-11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218220.1 True 1701 mRNA 0.57 4 4990858 5010109

Neighbor

gene id symbol gene type direction distance location
LOC122324248 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 116484 4855129 ~ 4874374 (+)
eepd1 eepd1,LOC107672840,LOC107698645,LOC107563925,LOC107745036,LOC107550089 coding upstream 182324 4781346 ~ 4808534 (+)
sept7a sept7,LOC107698647,LOC107748356 coding upstream 217173 4738826 ~ 4773685 (+)
kcng2 kcng2,LOC107563932,LOC107672828,LOC107745038,LOC107550079,LOC107748384,LOC107698635 coding upstream 284098 4682953 ~ 4706760 (+)
ctdp1 ctdp1,LOC107672848,LOC107745039,LOC107748359,LOC107698650 coding upstream 326248 4581798 ~ 4664610 (+)
LOC122324057 rit1,LOC107676106,LOC107563922,LOC105906336,LOC107748378,LOC107672884 coding downstream 4698 5014807 ~ 5025133 (+)
pex11b pex11b,LOC107550082,LOC107563923 coding downstream 15719 5025828 ~ 5029875 (+)
LOC122323251 LOC107550063,LOC107676099,LOC107550192,LOC107672839,LOC107676100 coding downstream 173467 5183576 ~ 5186131 (+)
LOC122324147 NA coding downstream 220303 5230412 ~ 5232089 (+)
sema4ab LOC107705066,LOC107702572,LOC107731578,LOC107550189,LOC107672813,LOC107598230 coding downstream 235242 5245351 ~ 5268208 (+)
G130612 NA non-coding upstream 1105 4850884 ~ 4989753 (+)
G130599 LOC107563917 non-coding upstream 31696 4825444 ~ 4959162 (+)
G130618 NA non-coding upstream 105574 4883274 ~ 4885284 (+)
G130604 NA non-coding upstream 188666 4796956 ~ 4802192 (+)
G130449 NA non-coding upstream 492672 4497949 ~ 4498186 (+)
LOC122324049 NA non-coding downstream 20916 5031025 ~ 5039776 (+)
G130622 NA non-coding downstream 38285 5048394 ~ 5220081 (+)
G130665 NA non-coding downstream 346761 5356870 ~ 5357094 (+)
G130676 NA non-coding downstream 372707 5382816 ~ 5386117 (+)
G130677 NA non-coding downstream 375027 5385136 ~ 5385548 (+)
G130614 NA other upstream 3901 4850592 ~ 4986957 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 7614 4977885 ~ 4983244 (+)
G130619 si:dkey-222b8.1,LOC105906332,LOC103033551,LOC101072080,LOC107550085,LOC107698642,LOC107748351,LOC104941765 other upstream 17511 4965310 ~ 4973347 (+)
LOC122323731 snapin,LOC107745054,LOC107672825,LOC107563919,LOC107748383,LOC107550075 other upstream 26125 4828418 ~ 4964733 (+)
G130609 snapin,LOC107745054,LOC107563919,LOC107672825,LOC107748383 other upstream 28158 4960913 ~ 4962700 (+)
G130637 NA other downstream 152477 5162586 ~ 5163399 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 166161 5176270 ~ 5179677 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other downstream 213591 5223700 ~ 5314178 (+)
LOC122324077 NA other downstream 214972 5225081 ~ 5228226 (+)
LOC122324139 LOC107598234,LOC107672810 other downstream 573396 5583505 ~ 5585655 (+)

Expression


Co-expression Network