rcvrn3 (rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570)


Basic Information

Item Value
gene id rcvrn3
gene name rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17274717 ~ 17280868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218221.1
CATTCTTGGTCCACAACCACAGGGAGGTCATGGGAAACGCACAGAGCGGAGGGATTCCCAGAGAGATCCTGGACGACCTCAAGCTGACCACCAGGTTCTCAGAGTCTGAGATAACCCAGTGGTATGAGAACTTCCAGAAGCAGTGTCCTACAGGTCGCATCTCGCTACAGCAGTTTGAGGAGATCTACGCGAAATTCTTCCCTGAAAGTGATGCCAAAACTTATGCCCAGCACGTTTTTCGGTCCTTTGACACCAATGATGATGGGACACTAGATTTTAAAGAGTATGTTGTCGCACTTCACATGACCTCCTCGGGCAAGTCCACCTTGAAGCTGGAGTGGGCCTTCTCACTGTTTGATGTGGACAAGAATGGTTACGTCACAAAACCTGAAGTGGTTGAACTCAGCCAGGCGATTTTCAATCTCATACCAAAAGCGAAGCAGGCAAGTCTTCCCAGTGATGAGAACACGCCGGAGAAGAGAGCAGAGAAACTCTGGGCCGTCTTTGAGAAAAAGGACAACGAACGAGTCGCAGAGGGAGAGTTCATCGAGGCCATTCAGTCAAACGACATGGCCCTGCGTCTCATTCAGTACGACCATAAATGACCCAACACGACCGCGTTCATGCACACAGTGGTTTTGTCATGCTTGACTTCCTGCGCATTTGTTGtatattaattgttttcattaaacattCGCCATGCTTAACTCGTGTGTCACCATTGTGTTCTGCTagtttaacatgtttttattaaagcaactgtaaggttttttttacattgaaatgtCCGTTTCAAAATCATTCCGATGGTACACTCACATATAATAAGATAAAAGGCTCCTGTTTCCCACACTCCCATGATTTATGTCAGCAACAAATGCACATGTAGATGAATGTCTgctgtaatagttttttttgtacgtGGCATCATTGTTGTGGCGTGAAATACAGCTGGAGGCAAGGAAGTGATTTTCTGTAAAGGAATCTAGCAGAATCTCAATGACTATGTTTTGGATTATGATTATGCTCAAATTGGTCTGAGGATCCACAAAGTGTACGAAAATTAGTTGGGTATTTGAAATTAGGGGTGAAAAGGCTGAAAATTGACTGGGAAAAAGGCTAAAAAAAGTTGTATGAAATTAATTCATATAcgatataataatatatcaagATCAAAGTCCCTTTCAAATCCTCTTCAGATCTTTTGGAAAGGAAGTTTTGGTTTTAAACAAAGAACCATTTACTAGTCAAAAGATCTATAATCTCTTTCttagatttttatcattttgaagcacctttctttatggaaccatttagacaaaaaggttcttctatggcattgttAAGCGTTTTCAACAATGTAGTTGAAAATTCGCTCATCTTCATTACAAAAGCATTGTGAGTTTCTGTGTATACCTTTCTCTTGTTATAGTGTCTAAACCAGCAGAGTACGTACTTTCCTCCATCTCATCCATTCTGCTTTTCACTTCCTGACCTCCGTCTGAATCTCGAGCGTCTTCAGACTCACATTAACGCAACAGCGAAGTCTTCTCATTTAACTGCAGGGGGGCTCCAAAATCAAACCCCAAACTACATACAGTTGCTTTAAGTAAAAGATACCAGTTTAATATAATAGTTGaaatattctattctgttctgtatGTTTGATTTCTgtcatgcatttattgaattagAGTTTTGTCTGGCACATAGACTTACCTTATATCTCCAGTAGTCTGTTTATAGATCGTTCAGTTGATGTATGCCgttatttaattattctctAATTATGGTGTCATTTCACTGTATGTAAATTCAAAACAATCTTCTTATGGTTTATATTTGCACTATGTTACAGTGTGTTATTGCAAAAaagttatgatttttttctccaaaCAGCATATTCAACGCGAGTTATTGATCGAATGGAACATTATTAGTAACACATGCAATTAAGTGTATGCTTTTACCATAACTTGACTATGTGTGAACATTGAACTtgcttaaaaacatgcaaaaaaatcatcTCTCCCCTCTTTGTTTCGTGATTCTGACTTTC

Function

symbol description
rcvrn3 Predicted to enable calcium ion binding activity. Acts upstream of or within cone photoresponse recovery. Is expressed in epiphysis; retinal outer nuclear layer; and retinal photoreceptor layer. Orthologous to human RCVRN (recoverin).

NR:

description
PREDICTED: visinin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218221.1 True 2059 mRNA 0.39 4 17274717 17280868

Neighbor

gene id symbol gene type direction distance location
necap1 necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381 coding downstream 15584 17255045 ~ 17259133 (-)
LOC122323367 si:ch211-171h4.6,LOC107724079,LOC107656587,LOC107739584,LOC107693286,LOC107599572 coding downstream 47224 17223716 ~ 17227493 (-)
LOC122323323 LOC107656565,LOC107739585,LOC107656564,LOC107739586,LOC107589464,LOC107599573,LOC107589461 coding downstream 61913 17211462 ~ 17212804 (-)
LOC122324047 LOC107739586,LOC107656565 coding downstream 68437 17204877 ~ 17206280 (-)
usf2 usf2,LOC107739527,LOC107724110,LOC107656615,LOC107693382 coding downstream 78266 17187177 ~ 17196451 (-)
cacng6a cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581 coding upstream 204078 17484946 ~ 17492735 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding upstream 245544 17526412 ~ 17534108 (-)
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding upstream 273684 17554552 ~ 17577989 (-)
si:ch211-288g17.3 LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507 coding upstream 327085 17607953 ~ 17612267 (-)
si:ch211-288g17.4 LOC107693284,LOC107724121,LOC107589401 coding upstream 369014 17649882 ~ 17656526 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding downstream 6669 17265664 ~ 17268048 (-)
G133920 NA non-coding downstream 13218 17260710 ~ 17261499 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding downstream 23413 17248684 ~ 17251304 (-)
LOC122323277 NA non-coding downstream 106609 17164694 ~ 17168108 (-)
G133902 NA non-coding downstream 110602 17163832 ~ 17164115 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding upstream 6799 17287667 ~ 17289380 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding upstream 44463 17325331 ~ 17345216 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding upstream 309128 17589996 ~ 17594324 (-)
G134247 NA non-coding upstream 317196 17598064 ~ 17670694 (-)
G134252 NA non-coding upstream 339306 17620174 ~ 17645633 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 55927 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 373941 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 376116 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 377574 16896108 ~ 16897143 (-)
LOC122324112 NA other downstream 382136 16891692 ~ 16892581 (-)
G133949 NA other upstream 2464 17283332 ~ 17284744 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other upstream 49829 17330697 ~ 17334234 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 332578 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 648821 17929689 ~ 17935436 (-)
G134318 NA other upstream 730014 18010882 ~ 18011399 (-)

Expression


Co-expression Network