ctps1a (ctps1a,ctps1,LOC107708718,LOC107689550,LOC108415321)


Basic Information

Item Value
gene id ctps1a
gene name ctps1a,ctps1,LOC107708718,LOC107689550,LOC108415321
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2311270 ~ 2318033 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218231.1
TGCCCTCTGGCCTCCGGCTCGCCGTATGTGTTCCGCTACTCTGAGGTCGAGCAGCACGTGTGATGTGAACACGTTTGTTATCGCTTTAACAACGGGTTTCGCGCTTTCGAGATATCGTGGTAGGTCTGTCGCACCAGGACGGTCCGGTATTTTACAGGTGTGATTGGCAGCATGAAGTATATTCTGGTGACGGGCGGTGTGATCTCAGGCATCGGGAAAGGCATTATAGCCAGCAGTGTGGGAACCATCCTCAAGTCCTGCGGCCTGCATGTCACAGCCATCAAGATCGACCCGTACATCAACATCGATGCGGGAACCTTCTCGCCGTATGAGCATGGTGAGGTGTTTGTTTTGGACGACGGTGGAGAGGTGGATTTAGATCTGGGCAACTATGAGCGTTTTCTGGACATCAGGCTCACTAAAGACAACAACCTGACCACCGGAAAAATCTACCAGTCGGTCATCAACAAAGAGCGCAGGGGAGATTACCTGGGCAAAACCGTACAGGTGGTGCCACACATAACTGATGCTATTCAGGAGTGGGTGATGCGTCAAGCTAAAGTTCCTGTAGACGATGACGATGTTGAGCCCCAGGTCTGCGTCATTGAGTTGGGCGGTACGGTCGGGGACATCGAGAGCATGCCTTTCATCGAGGCCTTCAGACAGTTCCAGTTTAAAGTGAAGAGAAATTTCTGCAACATTCACGTCAGTCTGGTACCACAGCCCAGTGCTACAGGAGAGCAGAAGACCAAACCCACACAGAACAGTGCGAGGGAGCTCAGAGGACTGGGACTGTCACCCGACCTGATAATGTGTCGTTGCTCCACTCCACTTGATACCTCGGTGAAGGAGAAGATATCCATGTTCTGTCATGTGGAGCCTGAACAGGTGATCTGTGTACACGATGTGTCGTCCATCTACAGAGTGCCGCTGCTCTTAGAAGACCAGGGCGTTGTGGGATATTTCTGTCGCAGACTGAACCTTCCCATTGAAGCCAGACCCAGGAAAATGCTCGCAAAGTGGAAAGAGATGTCAGACAGGTCGGACAGGCTGTTGGAGCAATGCTCCATTGCTCTGGTAGGGAAATACACCAAGTTTTCAGACTCCTATGCCTCTGTTATCAAAGCCCTGGAACACTCCGCTCTCGCCATCAGCCACAAACTAGAGGTTAAGTACGTTGACTCTGCAGATTTGGAGGCCAGCACGTTACAGGAGGAACCTGTGAAGTACCACGAGGCCTGGCAGAAGCTCTGCAGCGCAGATGGTATTTTAGTACCTGGAGGTTTTGGGATTCGAGGGACGGAGGGCAAGATTCAAGCCATCAGCTGGGCCAGGAAGCAGAAGAAGCCTTTCCTCGgtgtgtgtttggggaTGCAGCTCgctgtgtgtgaatttgctagGAACATGTTGGATTGGAAAGGTGCCAACTCCACAGAATTCGACCCGGAAAGTAAACATCCCGTGGTGATAGACATGCCAGAGCACAATCCAGGGCAGATGGGAGGAACTATGCGACTGGGGAAAAGGAAAAccattttcaaaaccaaaaacagcATACTTAGAAAACTTTATGGAGATGTAGATTATGTTGAGGAAAGACACAGACATCGCTTTGAGGTGAACCCAGAGCTGAAGCAGCATTTTGAGGAGAAGGGCTTTCATTTCGTGGGTCAGGACGTGGAGGGCGAGAGAATGGAGGTCATAGAGCTGGACGATCACCCGTATTTTGTTGGTGTCCAGTATCACCCAGAATTCACATCCAGACCCATTAAACCATCTCCACCATACTTGGGCCTGCTGCTGGCTGCTGCTGGGAGACTCCCAGGTTATCTTCAGAAAGGCTGTCGGCTTTCACCACGAGAAACGTACAGTGACCGAAGCGGCAGCAGTTCCCCAGACATGGAGATCATGGAGTTCAAACTACGTTCACTCGCTCAGGAATGAATCTGTTCATGGTATGTTGCAGCCAGGTCTGGTCTCTGGGAGGTAGTTTCAAGGATCCAAGAAATAAGAACTGTCACACGATCAATTAAACTCAAATTTATAAACTT

Function

symbol description
ctps1a Predicted to enable CTP synthase activity and identical protein binding activity. Acts upstream of or within notochord development. Predicted to be active in cytoophidium and cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in immunodeficiency 24. Orthologous to human CTPS1 (CTP synthase 1).
ctps1 Enables CTP synthase activity and identical protein binding activity. Involved in B cell proliferation; CTP biosynthetic process; and T cell proliferation. Located in cytoophidium. Implicated in immunodeficiency 24. Biomarker of biliary tract benign neoplasm.

NR:

description
PREDICTED: CTP synthase 1

GO:

id name namespace
GO:0044210 'de novo' CTP biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0003883 CTP synthase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218231.1 True 2051 mRNA 0.51 19 2311270 2318033

Neighbor

gene id symbol gene type direction distance location
foxo6b si:ch211-206a7.2,LOC107689548,LOC107732925,LOC107708715,LOC107690913,LOC107595898 coding upstream 129543 2153835 ~ 2181727 (+)
pdik1l pdik1l,LOC107690927,LOC107732927 coding upstream 180744 2119968 ~ 2130526 (+)
lin28ab lin28a,LOC107690946,LOC107708696,LOC107595909,LOC107732914 coding upstream 195767 2102744 ~ 2115503 (+)
sf3a3 sf3a3 coding upstream 279085 2026415 ~ 2032185 (+)
nkiras1 nkiras1,LOC107655880 coding upstream 320361 1987321 ~ 1990909 (+)
rab42a rab42a,LOC108414691,LOC103028730,LOC107732921,LOC107689573,LOC107708721,LOC107595911,LOC107556890,LOC107675932 coding downstream 4368 2322401 ~ 2327881 (+)
LOC122324256 NA coding downstream 12108 2330141 ~ 2330276 (+)
gmeb1 gmeb1,LOC107556889,LOC107595901,LOC107708700 coding downstream 13700 2331733 ~ 2341123 (+)
ptprua ptprua,LOC107732911,LOC108272369 coding downstream 62588 2380621 ~ 2564556 (+)
hivep3a hivep3a,LOC107708727,LOC107687396,LOC107689544,LOC107732924,LOC107595896,LOC107569862,LOC107732908 coding downstream 576511 2894544 ~ 2914709 (+)
G129916 NA non-coding upstream 45835 2265217 ~ 2265435 (+)
G129886 NA non-coding upstream 228650 2082278 ~ 2082620 (+)
G129881 NA non-coding upstream 254388 2056405 ~ 2056882 (+)
G129795 NA non-coding upstream 606738 1700588 ~ 1704532 (+)
G129743 NA non-coding upstream 778265 1532566 ~ 1533005 (+)
G129936 NA non-coding downstream 25002 2343035 ~ 2343239 (+)
G129942 NA non-coding downstream 33265 2351298 ~ 2351565 (+)
G129947 NA non-coding downstream 61050 2379083 ~ 2379355 (+)
G129974 NA non-coding downstream 410432 2728465 ~ 2734183 (+)
G129979 NA non-coding downstream 435991 2754024 ~ 2785827 (+)
ppp1r8a ppp1r8a,LOC107690919,LOC107732917,LOC107708698,LOC108441741,LOC108272406,LOC105903676 other upstream 169938 2134652 ~ 2141332 (+)
LOC122323678 NA other upstream 337886 1966740 ~ 1973384 (+)
thrb thrb,LOC107743925,LOC107719848,LOC107700654,LOC106588669 other upstream 345580 1870158 ~ 1965690 (+)
LOC122323556 LOC107717722,LOC107700644,LOC107565248 other upstream 638486 1657258 ~ 1672784 (+)
G129682 LOC107664710 other upstream 1204697 1072151 ~ 1106573 (+)
G129993 NA other downstream 467892 2785925 ~ 2786348 (+)
LOC122323290 NA other downstream 567380 2885413 ~ 2887628 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other downstream 571590 2889623 ~ 2893601 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other downstream 641560 2959593 ~ 2978416 (+)
G130077 NA other downstream 775034 3093067 ~ 3093714 (+)

Expression


Co-expression Network