LOC122324057 (rit1,LOC107676106,LOC107563922,LOC105906336,LOC107748378,LOC107672884)


Basic Information

Item Value
gene id LOC122324057
gene name rit1,LOC107676106,LOC107563922,LOC105906336,LOC107748378,LOC107672884
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5014807 ~ 5025133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218237.1
GCTCTCTCATGGCTTTGTATGTTTACAGTGAGAATTGTATGGCAGGAATTTTCtaacatcaaatatttaaacatcatttgCATCGATACAAAAGTCCCAATGGAGACGGAGATCCTGTGACACAGTTTTCCGGATGGAGTCCTCGCGGAGCACTGGGGGTCACTCCCGCGAGTACAAGTTGGTGATGTTGGGAGAGGGAGGCGTGGGCAAAAGTGCCATCATCATGCAGTTTATAAGTCACAGATTTCCAGAGGATCACGACCCCACCATTGAGGATGCCTATAAAACACAGATCCGCATAGACGACGAGCCGGCAAACCTGGACATCTTGGACACGGCAGGACAGGCGGAGTTCACAGCCATGCGGGACCAGTACATGCGAGCGGGCGAAGGCTTCATCATCTCGTACTCCATCACGGACCGCCGCAGCTTCCAGGAGGCCCGTCACTTCAAGCAGCTGATCTACCGCGTGCGGCGCACCGTCGACACCCCCGTCGTACTGGTGGGGAACAAGTCTGACCTGGCCCACCTTAGACAGGTGTCTGTAGAGGAGGGCAAGCAGCTGGCCAGGGAGTTCCAGTGCCCGTTTTTCGAGACGTCCGCCGCGTTTCGTTACTACATCGACGAGGTGTTTGCTGCACTGGTGCGTCAGATCCGTCAGCGCGAGGCCGAGATGGTGCGGGGCAGCGAGAGGAAAACCCGCCGCAGCCATTCCTTCTGGAGCCGCCTCAAAGCCCCCTTCCATAAGAAACAGCAGTCCGAGCACTGAGAAGAAGGCTCTCTCAGTCCCATCTCCCTCGGATGGCTTCTGTCTGATTGTCTGCAACGATGCACTCATCCCAATCATTAGACTAAACCCTCGCTCTCATCATTCGGGACGTGGGCTGATTTACTGATATTAGGGATCCAGAAAGACTTAGTAAACCTGACCctagttattatttttctctttttggaCAGCATTATACGTCGCGAAGGTGAACGCTGTACCTCGTATTTTAACCGATGGGAATGAAGAATGAAGATTTGTGGGGGGGTTTTTGAAGTAAGGAGAGGTCGGAGATGTGCATGTTGGAATAAAATGAAGGACGGAGGTGTTTGGGAGAGCTCGTTGCACAGGGCggaaagaaggaaaagaaagtGGCGAGGGTTTGCGGTAGAAATACTAACCTGCCAGTATATGAGTACTGTGAACCATTCCTTTTGTTAGACACATTCACACACCCTTGCTGTAGCAAATCTGTtctttagcttctttttaaaaaaacgtgtgAATAATAACATGTCCGGGTCACATTTCACCCCTAAAGTGTGACctttctattaaatattattgaataaataattaattagatgGGATGCATTGcaaattattttcataactGGAAGCACATTTCCCCCCAAATACTGGGATGTCACAATTATtacttgttttttacatttagatcaTCATTACAGTAGTATTTCAcaacttaatatatttttcattttacagtaatgatttttttttttactttaatgcaaatgtaatagTGGGGTTGCTTTATTGTCATGGAATTTGCtccaaattatataaatacattttattttgacctGAAATATTACCTGGACATGTGCGATTCAGTCAACTAGGATGTATTTGATGAAAACTGAGCTGAATGAACTGGTTGcaaaatacactgtatgaatgaccttttttttgttttttattattattactctttttGCCGAGCAATATTCAGGTCCGACTTTAAGCACATTAATATGCTGACCGACTTGATTATGATTGAAAACGAAATTGTTTCCTTTTTCCACAGGGCCATTTTTATTCCAGTGGTTTCTGCAGTCATTGTGTAGGAAACGAAAGACTACAATGTGGCTCATGATTTCCTCTCACGCACGCTGTGCACTTACTGCGCTTCACGTACATGAATAGAATGTCTGTTCATTTTGGCATTTCATGCAAATTCATGTCATAGTTTTTCTTGtgattattagattttatttttaagcagaaTGGGTTTACtatattttcctttatttattgttatcagAGATTCTCAAATAAAATTCACTTTACCAATCTA
>XM_043218238.1
CTGCTTACTTGTTTTCATTCCTTCCCATTCCCAAGCCGGCGTCCGTCATTTCAACAGAACACTGTCATCATTGTTCGCTACAGGGTTTTAACCCAGACTTGAATTAATCTCTTATTGGATGGTATAACATGCATTTGCCAAATTGATGTCAATTTTCCTTTTCTTGCAACTTAAAGAAATGTAGATGTCAGTCGGCAGGACtgcaacaaattattattttgattgatCGAGTAACTATAAACAAATCGTATTTATCTTTTAGCTCTCATTCAGTTCTCAGAATTTTTCCAAACGTAATCAGGGAGCTGTGAGAAAGGCACTTCATGATGTTTAAATCCTCCAGTGAGCAAGACACACTTTCTTCTCTAAGAAATTGTTTTTTCACAAAGGCAGTGAAGCCTAAAAACTATGTTTAGgaacattaacatttaagaaaattaactttttttgaaaTTAGAAATTTAGTTTGAACCTCAGTGTCAATTATCCATTatatattgaattttttcatgtgtgttttttttatttatttattttttttagaggctcttaaaagcataaatgtttCTTCGTCTACTGGCCCCAAAACAAGAAGGTGGGCTAAAGTTGGCCTTTGATGATGGGAATAAATATGCCCATTACTTTGTGATGGTCAAATATGCTTAATTTgaaaacaattgaaaataatGACACGGGGcaaaaagtctttaaatggatagttcaaccaaaaataaagaatctgtcatcatttactcaccctcaaggtTTTTGGTTTAAACCTTCTGttgaacaaaaaatgtattatttagaaatatgttGGTAACCCATATAAATGGGTTGGCaaccaataaaataataaataaaacaaaacaaataaaattctgGAAGCCAATGGCTACCATCAGCTGTTTTGTTTACCAACGTCCAATCTTCTTTCGTGGTTTGGCCAGATCTGGAAGGCGACGAAAGCGTCACTATATCGTCACTACTGCCTCCTTAAATAGacttttctatttctttctttgattTTGGCAGGACGTAATTGTATGCGATTGACCCTTGTGCCAGATTCGAGGGGTTTCTTTCGCTGCGGTCAGACAGCGGGGCGGTTTCGTAGCCGTAGACGTACAGTCACAGCCGGCCAGACAATAAAAGTGTGGGTGTTGGCTCGGTGCTTTAGTCTGGTCGTTACGAAGGCGCAGGTGCCTAGCAACTTCCTTCCCCTCCAGGAGTCTGTTGCCTAGGAGATGAGCGGAGGTCACCTGCCATCATCATGCAGTTTATAAGTCACAGATTTCCAGAGGATCACGACCCCACCATTGAGGATGCCTATAAAACACAGATCCGCATAGACGACGAGCCGGCAAACCTGGACATCTTGGACACGGCAGGACAGGCGGAGTTCACAGCCATGCGGGACCAGTACATGCGAGCGGGCGAAGGCTTCATCATCTCGTACTCCATCACGGACCGCCGCAGCTTCCAGGAGGCCCGTCACTTCAAGCAGCTGATCTACCGCGTGCGGCGCACCGTCGACACCCCCGTCGTACTGGTGGGGAACAAGTCTGACCTGGCCCACCTTAGACAGGTGTCTGTAGAGGAGGGCAAGCAGCTGGCCAGGGAGTTCCAGTGCCCGTTTTTCGAGACGTCCGCCGCGTTTCGTTACTACATCGACGAGGTGTTTGCTGCACTGGTGCGTCAGATCCGTCAGCGCGAGGCCGAGATGGTGCGGGGCAGCGAGAGGAAAACCCGCCGCAGCCATTCCTTCTGGAGCCGCCTCAAAGCCCCCTTCCATAAGAAACAGCAGTCCGAGCACTGAGAAGAAGGCTCTCTCAGTCCCATCTCCCTCGGATGGCTTCTGTCTGATTGTCTGCAACGATGCACTCATCCCAATCATTAGACTAAACCCTCGCTCTCATCATTCGGGACGTGGGCTGATTTACTGATATTAGGGATCCAGAAAGACTTAGTAAACCTGACCctagttattatttttctctttttggaCAGCATTATACGTCGCGAAGGTGAACGCTGTACCTCGTATTTTAACCGATGGGAATGAAGAATGAAGATTTGTGGGGGGGTTTTTGAAGTAAGGAGAGGTCGGAGATGTGCATGTTGGAATAAAATGAAGGACGGAGGTGTTTGGGAGAGCTCGTTGCACAGGGCggaaagaaggaaaagaaagtGGCGAGGGTTTGCGGTAGAAATACTAACCTGCCAGTATATGAGTACTGTGAACCATTCCTTTTGTTAGACACATTCACACACCCTTGCTGTAGCAAATCTGTtctttagcttctttttaaaaaaacgtgtgAATAATAACATGTCCGGGTCACATTTCACCCCTAAAGTGTGACctttctattaaatattattgaataaataattaattagatgGGATGCATTGcaaattattttcataactGGAAGCACATTTCCCCCCAAATACTGGGATGTCACAATTATtacttgttttttacatttagatcaTCATTACAGTAGTATTTCAcaacttaatatatttttcattttacagtaatgatttttttttttactttaatgcaaatgtaatagTGGGGTTGCTTTATTGTCATGGAATTTGCtccaaattatataaatacattttattttgacctGAAATATTACCTGGACATGTGCGATTCAGTCAACTAGGATGTATTTGATGAAAACTGAGCTGAATGAACTGGTTGcaaaatacactgtatgaatgaccttttttttgttttttattattattactctttttGCCGAGCAATATTCAGGTCCGACTTTAAGCACATTAATATGCTGACCGACTTGATTATGATTGAAAACGAAATTGTTTCCTTTTTCCACAGGGCCATTTTTATTCCAGTGGTTTCTGCAGTCATTGTGTAGGAAACGAAAGACTACAATGTGGCTCATGATTTCCTCTCACGCACGCTGTGCACTTACTGCGCTTCACGTACATGAATAGAATGTCTGTTCATTTTGGCATTTCATGCAAATTCATGTCATAGTTTTTCTTGtgattattagattttatttttaagcagaaTGGGTTTACtatattttcctttatttattgttatcagAGATTCTCAAATAAAATTCACTTTACCAATCTA
>XM_043218240.1
GTGCACTGCAGAAGGTTCTTTAGGCCATCATCATGCAGTTTATAAGTCACAGATTTCCAGAGGATCACGACCCCACCATTGAGGATGCCTATAAAACACAGATCCGCATAGACGACGAGCCGGCAAACCTGGACATCTTGGACACGGCAGGACAGGCGGAGTTCACAGCCATGCGGGACCAGTACATGCGAGCGGGCGAAGGCTTCATCATCTCGTACTCCATCACGGACCGCCGCAGCTTCCAGGAGGCCCGTCACTTCAAGCAGCTGATCTACCGCGTGCGGCGCACCGTCGACACCCCCGTCGTACTGGTGGGGAACAAGTCTGACCTGGCCCACCTTAGACAGGTGTCTGTAGAGGAGGGCAAGCAGCTGGCCAGGGAGTTCCAGTGCCCGTTTTTCGAGACGTCCGCCGCGTTTCGTTACTACATCGACGAGGTGTTTGCTGCACTGGTGCGTCAGATCCGTCAGCGCGAGGCCGAGATGGTGCGGGGCAGCGAGAGGAAAACCCGCCGCAGCCATTCCTTCTGGAGCCGCCTCAAAGCCCCCTTCCATAAGAAACAGCAGTCCGAGCACTGAGAAGAAGGCTCTCTCAGTCCCATCTCCCTCGGATGGCTTCTGTCTGATTGTCTGCAACGATGCACTCATCCCAATCATTAGACTAAACCCTCGCTCTCATCATTCGGGACGTGGGCTGATTTACTGATATTAGGGATCCAGAAAGACTTAGTAAACCTGACCctagttattatttttctctttttggaCAGCATTATACGTCGCGAAGGTGAACGCTGTACCTCGTATTTTAACCGATGGGAATGAAGAATGAAGATTTGTGGGGGGGTTTTTGAAGTAAGGAGAGGTCGGAGATGTGCATGTTGGAATAAAATGAAGGACGGAGGTGTTTGGGAGAGCTCGTTGCACAGGGCggaaagaaggaaaagaaagtGGCGAGGGTTTGCGGTAGAAATACTAACCTGCCAGTATATGAGTACTGTGAACCATTCCTTTTGTTAGACACATTCACACACCCTTGCTGTAGCAAATCTGTtctttagcttctttttaaaaaaacgtgtgAATAATAACATGTCCGGGTCACATTTCACCCCTAAAGTGTGACctttctattaaatattattgaataaataattaattagatgGGATGCATTGcaaattattttcataactGGAAGCACATTTCCCCCCAAATACTGGGATGTCACAATTATtacttgttttttacatttagatcaTCATTACAGTAGTATTTCAcaacttaatatatttttcattttacagtaatgatttttttttttactttaatgcaaatgtaatagTGGGGTTGCTTTATTGTCATGGAATTTGCtccaaattatataaatacattttattttgacctGAAATATTACCTGGACATGTGCGATTCAGTCAACTAGGATGTATTTGATGAAAACTGAGCTGAATGAACTGGTTGcaaaatacactgtatgaatgaccttttttttgttttttattattattactctttttGCCGAGCAATATTCAGGTCCGACTTTAAGCACATTAATATGCTGACCGACTTGATTATGATTGAAAACGAAATTGTTTCCTTTTTCCACAGGGCCATTTTTATTCCAGTGGTTTCTGCAGTCATTGTGTAGGAAACGAAAGACTACAATGTGGCTCATGATTTCCTCTCACGCACGCTGTGCACTTACTGCGCTTCACGTACATGAATAGAATGTCTGTTCATTTTGGCATTTCATGCAAATTCATGTCATAGTTTTTCTTGtgattattagattttatttttaagcagaaTGGGTTTACtatattttcctttatttattgttatcagAGATTCTCAAATAAAATTCACTTTACCAATCTA

Function

symbol description
rit1 Predicted to enable GTPase activity; calmodulin binding activity; and guanyl ribonucleotide binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and heart development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Noonan syndrome 8. Orthologous to several human genes including RIT1 (Ras like without CAAX 1).

NR:

description
PREDICTED: GTP-binding protein Rit1-like, partial

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07832 RIT1; Ras-like without CAAX 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218237.1 False 2087 mRNA 0.43 6 5014807 5025133
XM_043218238.1 True 3137 mRNA 0.41 5 5017560 5025133
XM_043218240.1 False 1896 mRNA 0.43 5 5018845 5025133

Neighbor

gene id symbol gene type direction distance location
LOC122324037 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 4698 4990858 ~ 5010109 (+)
LOC122324248 syt11a,LOC107745033,LOC107748350,LOC107672847,LOC107676104,LOC107550084 coding upstream 140433 4855129 ~ 4874374 (+)
eepd1 eepd1,LOC107672840,LOC107698645,LOC107563925,LOC107745036,LOC107550089 coding upstream 206273 4781346 ~ 4808534 (+)
sept7a sept7,LOC107698647,LOC107748356 coding upstream 241122 4738826 ~ 4773685 (+)
kcng2 kcng2,LOC107563932,LOC107672828,LOC107745038,LOC107550079,LOC107748384,LOC107698635 coding upstream 308047 4682953 ~ 4706760 (+)
pex11b pex11b,LOC107550082,LOC107563923 coding downstream 695 5025828 ~ 5029875 (+)
LOC122323251 LOC107550063,LOC107676099,LOC107550192,LOC107672839,LOC107676100 coding downstream 158443 5183576 ~ 5186131 (+)
LOC122324147 NA coding downstream 205279 5230412 ~ 5232089 (+)
sema4ab LOC107705066,LOC107702572,LOC107731578,LOC107550189,LOC107672813,LOC107598230 coding downstream 220218 5245351 ~ 5268208 (+)
si:dkey-81h8.1 LOC107672832,LOC107702549,LOC107550200,LOC107710627 coding downstream 244878 5270011 ~ 5279299 (+)
G130612 NA non-coding upstream 25054 4850884 ~ 4989753 (+)
G130599 LOC107563917 non-coding upstream 55645 4825444 ~ 4959162 (+)
G130618 NA non-coding upstream 129523 4883274 ~ 4885284 (+)
G130604 NA non-coding upstream 212615 4796956 ~ 4802192 (+)
G130449 NA non-coding upstream 516621 4497949 ~ 4498186 (+)
LOC122324049 NA non-coding downstream 5892 5031025 ~ 5039776 (+)
G130622 NA non-coding downstream 23261 5048394 ~ 5220081 (+)
G130665 NA non-coding downstream 331737 5356870 ~ 5357094 (+)
G130676 NA non-coding downstream 357683 5382816 ~ 5386117 (+)
G130677 NA non-coding downstream 360003 5385136 ~ 5385548 (+)
G130614 NA other upstream 27850 4850592 ~ 4986957 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 31563 4977885 ~ 4983244 (+)
G130619 si:dkey-222b8.1,LOC105906332,LOC103033551,LOC101072080,LOC107550085,LOC107698642,LOC107748351,LOC104941765 other upstream 41460 4965310 ~ 4973347 (+)
LOC122323731 snapin,LOC107745054,LOC107672825,LOC107563919,LOC107748383,LOC107550075 other upstream 50074 4828418 ~ 4964733 (+)
G130609 snapin,LOC107745054,LOC107563919,LOC107672825,LOC107748383 other upstream 52107 4960913 ~ 4962700 (+)
G130637 NA other downstream 137453 5162586 ~ 5163399 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other downstream 151137 5176270 ~ 5179677 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other downstream 198567 5223700 ~ 5314178 (+)
LOC122324077 NA other downstream 199948 5225081 ~ 5228226 (+)
LOC122324139 LOC107598234,LOC107672810 other downstream 558372 5583505 ~ 5585655 (+)

Expression


Co-expression Network