nsun2 (nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605)


Basic Information

Item Value
gene id nsun2
gene name nsun2,LOC107694333,LOC107691499,LOC107711338,LOC107595605
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6859069 ~ 6877006 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218245.1
TTCAGTCGAACGTGCGCTTGTTTAGTTTGCGTCACTAACACGTGAGTACAGCCGGAGCCGAGTGCGGTTCTTCAGACAGTAAGTGAAAACGCGTCGCAGGTTTATATCCAAAGTTATATGCGTGTCCGACATGGGCaggagaaacagaaacagacaaaGACCCCAGCAGAACAGAGACGGGAGACCAGAGGCGAAAAGAAGCAGAGATGATGCTGGCTGGGGAGCTGGATACTCTGAGATCATCAAGGAAAACCAACTCTTTGAGCATTACTACAAGGAGCTGAAGATTGTTCCACAGGGAGAGTTTGAGGAGTTCATGGAGGCCATGAGGGAGCCACTGCCTGCTACCATACGTATCACTGGATACAAGAGTCATGCCAAAGAAATCCTTCATACTCTAAAAGAGAAATACTTCAAAGAGGTTCAAGATCTTGAGGTGGATGGGCAGAAGATTGAGGCTCCTCAGCCCTTAAGTTGGTATCCCGATGAGCTGGCGTGGCACACTAACCTGAGCAGAAAGATTCTGCGCAAATCTCCACTCCTGGAAAAATTCCACCAGTTCTTGGTCAGCGAAACAGAATcgGGGAATATTAGCAGACAGGAAGCGGTCAGCATGATTCCTCCTCTTCTACTGAAAATCGAGCCTCAGCATAAGATTCTGGACATGTGTGCAGCTCCGGGGTCGAAGACTGCTCAACTAATAGAGATGCTTCACTCTGACATGGACGTGCCCTTTCCCGAGGGCTTTGTAATTGCCAATGATGTGGATAACAAGCGCTGCTACCTGCTGGTCCACCAGGCCAAGAGATTGAACAGTCCGTGTATTATGGTGGTCAACCATGATGCCTCCAGCATCCCACGTCTGCACTTTGACCGGGACGGGAAGAAAGATGTCCTGTTTTATGACCGGATCCTGTGTGATGTACCCTGCAGTGGAGATGGAACGATGAGGAAAAACATTGATGTGTGGAAAAAATGGACAACCAGCAACAGCCTCCAGCTCCACGGGCTGCAGATCAGGATCGCCGTGCGAGGTGTGGAGCAGCTGGCGGTAGGAGGCAGGATGGTGTACTCCACCTGCTCTCTGAACCCCATCGAGGATGAAGCCGTCATCACTGCCCTGCTGGAGAAGAGTGAAGGTGCTTTAGAGTTAGCAGATGCCTCTGCAGATCTCCCGGGACTCAAATATATGCCTGGAATTACATCTTGGAAGGTGATGACCAAAGAGGGTCAGTGGTTCTCTGACTGGTCAGAAGTGCCAACGAATCGACACACTCAGATCAGACCCACCATGTTTCCACCAACAGACCCAGACAAGCTGGCCAATATGAAGCTGGAGAGATGTATGAGAATACTGCCCCATCACCAGAACACCGGTGGCTTTTTTGTCGCTGTGTTGGTGAAGAAGGCACCCATGCCATGGAACCGCCGTTTCCCAAAGCTTCGTAACAGGGAGGTGAACTCCTCCGGTGAGACGGCTCCTGCAGAGGAGCTGCAGACGGGGGAGTCTCCGGCTGACGTCCCGCCAGCAGACGGCTCATCCGCTGATGCCGCTGTGGAAGCAGTGGAGGGAGACACTCCTGCAGAGGAAAAGCCGTCTGTCCCAGATACCCCTGACCCTTCAGAGGTCAAGAAAGATAATGTCTGTGGCCCCCCTCCTCCAAAGAAGATGAAACTCTTTGGCTTCAAAGAGGatccttttgtgtttctgaCAGAGGATGACCCCATCTTCCCTCCCATCCAAGCTTTCTACAACCTGTCTCCAGGTTTCCCCAAGCTGAACGTATTGACTCGCACCCACGAAGGAAAAAAGAGGCACCTGTACATGGTGTCCAAAGAGCTCAGAAATGTTCTGCTCAACAACAGCGAAAGAATGAAGGTTATAAACACGGGAGTGAAGGTCTGGTCCAGAAATACTGATGGAGAACAGTTTGGTTGTGCTTTTAGACTGGCTCAGGAGGGTATTTACACGCTGTGCCCCTACATCAGAGCCCGAATCATCAACATCAGCGTGGAGGACGTGAAAGTGCTCCTCACGCAGGAGAACCCCTTCCTCAGCAAGCTCGGAGATGACGCTCACAATCAGGCCAAAAAACTTGaaaTGGGCAGCATTGTTTTACGATACCTACCAGATCCAAAGGATCTCGACGCTCCTCAGTGTCCTATAGATTTGTGCGGTTGGAGAGGAAAGACTTCCATCAGGGCTTTCGTCCCACGTAATGAGCGTCTTCATTACCTCCGCATGGTCGGGGTGGAAGTCTTTCGTGACAAACAGGGAAAGAGGAACGACGGTTCAACAGAAACCCAGGAAGGAAGCACAGAAGATGCAGAGGGACTGAGCAAAGAGCCGGATCTCTTAGAACAGGAGCGAAATGGTTCAGAGTCCAACTCTAATGGCACGGAACCTGTTAGCAGCACTTGTGATGGGCCTACGAGTTAGTCGTCTAAGTAGCTTAGATCAggagaaaaatgaaaagcttaCTAGGActtctgtatgtgtttttttcccccccttgtGCAGGAGCACCTGGTTGGGTAACCTCAGAAGAACTGAtctgggaaaaaaattatttttatttcacgagagctttttaaaatattgattaaaagcattttctgttggatatgtttgttttatgttgttcAAGGGACAAATTTAACGGAGCCACATTTGTTACGCTTTTTGAATTAGTGGCTTTACACCAGCTCAGTcttaatgcgtttttttttttttttttttttttaaaacccttgTACATGATTTACACATTGTGCATTACGCcaatttgtttgttgttatacttttaaataaaccgCGTTaaccaatattttaatatagtttggCACCATTTTCAGTGGTCTGTAGACTGCGTTTTAGCGTGCTGTATTAACAGAAAAGCCTGTACATAAAAATATCGGGTTTGAATTTGTATTCATAAAGCAGCAGTTGAAAAGAACCTGAATGGCCTACTGCTGTTGTCTGAAGTTATAAAATCCAGCGAATATTCCCCA

Function

symbol description
nsun2 Predicted to enable tRNA (cytosine-5-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human NSUN2 (NOP2/Sun RNA methyltransferase 2).

NR:

description
PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase

GO:

id name namespace
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity molecular_function

KEGG:

id description
K15335 NSUN2, TRM4; tRNA (cytosine34-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218245.1 True 3012 mRNA 0.48 19 6859069 6877006

Neighbor

gene id symbol gene type direction distance location
c19h5orf49 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 coding upstream 89324 6767641 ~ 6769745 (+)
atat1 atat1,LOC107584296,LOC107694337,LOC107754836,LOC107711335,LOC107677465,LOC107595600 coding upstream 142084 6704840 ~ 6716985 (+)
ddx39b ddx39b,LOC107584302,LOC107754831,LOC107694345,LOC107595593,LOC103042292,LOC108272881 coding upstream 199243 6649299 ~ 6659826 (+)
tnfa LOC107694347 coding upstream 341707 6515100 ~ 6517362 (+)
nelfe nelfe,LOC107754803,LOC107584366,LOC107694353,LOC107677468,LOC107595590,LOC107711324 coding upstream 381919 6473609 ~ 6477150 (+)
irx4b irx4,LOC107754842,LOC107584360,LOC107691545,LOC107595627 coding downstream 156577 7033583 ~ 7038126 (+)
mrpl36 mrpl36 coding downstream 166433 7043439 ~ 7044961 (+)
LOC122323892 vars2,LOC107584340 coding downstream 479090 7356096 ~ 7376316 (+)
LOC122323846 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 500748 7377754 ~ 7395725 (+)
maco1a tmem57a,LOC107584286,LOC107687072,LOC107745723,LOC107709293,LOC107691503 coding downstream 704240 7581246 ~ 7590155 (+)
G131093 LOC107694325,LOC107711328,LOC107754828,LOC107584304,LOC107677461,LOC107595615 non-coding upstream 219840 6638481 ~ 6639229 (+)
G131016 LOC107677454,LOC107595587,LOC107584310,LOC107694359,LOC107754821 non-coding upstream 449328 6405385 ~ 6409741 (+)
G131010 NA non-coding upstream 465112 6392916 ~ 6393957 (+)
G130950 NA non-coding upstream 524825 6331665 ~ 6334244 (+)
LOC122324219 NA non-coding upstream 595115 6255006 ~ 6263954 (+)
G131241 NA non-coding downstream 79563 6956569 ~ 6956786 (+)
G131245 NA non-coding downstream 99524 6976530 ~ 6976854 (+)
G131249 NA non-coding downstream 104944 6981950 ~ 6982175 (+)
G131252 NA non-coding downstream 136883 7013889 ~ 7014418 (+)
G131256 NA non-coding downstream 155255 7032261 ~ 7032591 (+)
G131183 NA other upstream 22211 6833869 ~ 6836858 (+)
ppp1r11 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other upstream 162865 6691974 ~ 6696204 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other upstream 332989 6519920 ~ 6526080 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other upstream 370309 6463083 ~ 6488760 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other upstream 457771 6371835 ~ 6401298 (+)
med10 med10,LOC107691542,LOC107595625,LOC107584362 other downstream 23629 6900635 ~ 6902398 (+)
lpcat1 lpcat1,LOC107584290,LOC107694330,LOC107754844,LOC107691501 other downstream 169607 7046613 ~ 7066858 (+)
LOC122323953 sox4a,LOC107584287,LOC107694328,LOC107754846,LOC107711341,LOC107691508 other downstream 357465 7234471 ~ 7257652 (+)
LOC122323847 tmem57a,tmem57,LOC107584286,LOC107745723,LOC107687072 other downstream 574044 7451050 ~ 7454765 (+)
ldlrap1a ldlrap1a,LOC107709294,LOC107691509,LOC107562879,LOC107687073,LOC107745728 other downstream 714508 7591514 ~ 7605226 (+)

Expression


Co-expression Network