nudc (nudc,LOC107689540,LOC107700719,LOC107567584,LOC107550646,LOC107729000)


Basic Information

Item Value
gene id nudc
gene name nudc,LOC107689540,LOC107700719,LOC107567584,LOC107550646,LOC107729000
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3496699 ~ 3501432 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218262.1
AAACGTGGGCGGTCCTTGTATCTAGGAAGCAGTGCAGGCACCGCACCGGTTATAGCGTGACTGTTAGCGTCGACCCAccaaattatagtttttatcgTCTGTTATCTGAAGTAAATAGTGAAAATGGGTGATGATGAGGAGAAATATGACGGGATGTTGTTGGCCATGGCGCAGCAGCATGAAGGAGGAGTGCAGGAGctGGTGAACACATTCTTCAGCTTTCTAAGAAGGAAAACTGATTTCTTCACAGGAGGGGAGTCTGGAGCCCCAGAAAAGCTAGTTAAAGAGGCGTTTGCTCATCACAATCAGCTCGCCCTCAAAGTCCATAAAGAGAAGCAGTCCAGACAAGAGAAGGAGAAGCAGGAGAAGGCTGACAGAGCTGTTAAACTGAAGGAAGAGGAGAAGAAGCAGCAGGACACGGAGGAGCCCAGAATCAAAGAGCTCACAGACGAGGAGGCCGAGAGACTCCAGGCGCAATTAAATCAAacaaaagaagaaaagaaaaatgcagagGTACCTGAGAAAACGGACGGAGATGCatcagaaaaagacaaaaaagggTCGGACTCAGAAGCAGAGGAAGACgaaaaagacaaagacaagaTAAAGCCCAACTCTGGAAACGGAGCAGACCTTTCAAGCTACCGCTGGACTCAGACGCTGTCTGAAGTGGACCTGGTGGTGCCGTTCGACGTGAGCTTCCGCCTGAAGGGGAAGGACGTGGTGGTGGACGTGCAGCGGCGCTCCCTGAAGGTGGGGCTGAAGGGTCATCCGCCCGTGATCCACGCACAGCTCTACAACGAGGTGAAGGTGGAGGAGAGCTCCTGGCTCATAGAGGACGGGAAAGTGGTCACCGTCCATTTTGAGAAGATAAACAAAATGGAGTGGTGGAGCAGGTTAGTGACCACGGACCCCGAAATCAACACCAAGAAAATCTGCCCCGAGAACTCCAAGCTGTCGGATCTGGACGGGGAGACGCGCAGTATGGTGGAGAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGGCTGCCCACCTCTGAAGAGCAGAAGAAGCAGGACATCCTGAAGAAGTTCATGGCTCAGCATCCGGAGATGGACTTCTCCAAAGCCAAGTTCAGCTGAGAGCTGTCACCCAAAACATATCTGAGGCTCATCTCTCCTCAGACGTTAGATGACTGTTTGTCTAACTTGTTCACCTTTGTCATGCTGGAAGTGttattatacatgtttttttttttaataaataatttcaaaccCTA
>XM_043218263.1
AAAACGTGGGCGGTCCTTGTATCTAGGAAGCAGTGCAGGCACCGCACCGGTTATAGCGTGACTGTTAGCGTCGACCCAccaaattatagtttttatcgTCTGTTATCTGAAGTAAATAGTGAAAATGGGTGATGATGAGGAGAAATATGACGGGATGTTGTTGGCCATGGCGCAGCAGCATGAAGGAGGAGTGCAGGAGctGGTGAACACATTCTTCAGCTTTCTAAGAAGGAAAACTGATTTCTTCACAGGAGGGGAGTCTGGAGCCCCAGAAAAGCTAGTTAAAGAGGCGTTTGCTCATCACAATCAGCTCGCCCTCAAAGTCCATAAAGAGAAGCAGTCCAGACAAGAGAAGGAGAAGCAGGAGAAGGCTGACAGAGCTGTTAAACTGAAGGAAGAGGAGAAGAAGCAGCAGGACACGGAGGAGCCCAGAATCAAAGAGCTCACAGACGAGGAGGCCGAGAGACTCCAGGCGCAATTAAATCAAacaaaagaagaaaagaaaaatgcagagGTACCTGAGAAAACGGACGGAGATGCatcagaaaaagacaaaaaagggTCGGACTCAGAAGCAGAGGAAGACgaaaaagacaaagacaagaTAAAGCCCAACTCTGGAAACGGAGCAGACCTTTCAAGCTACCGCTGGACTCAGACGCTGTCTGAAGTGGACCTGGTGGTGCCGTTCGACGTGAGCTTCCGCCTGAAGGGGAAGGACGTGGTGGTGGACGTGCAGCGGCGCTCCCTGAAGGTGGGGCTGAAGGGTCATCCGCCCGTGATCCACGCACAGCTCTACAACGAGGTGAAGGTGGAGGAGAGCTCCTGGCTCATAGAGGACGGGAAAGTGGTCACCGTCCATTTTGAGAAGCTGTCGGATCTGGACGGGGAGACGCGCAGTATGGTGGAGAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGGCTGCCCACCTCTGAAGAGCAGAAGAAGCAGGACATCCTGAAGAAGTTCATGGCTCAGCATCCGGAGATGGACTTCTCCAAAGCCAAGTTCAGCTGAGAGCTGTCACCCAAAACATATCTGAGGCTCATCTCTCCTCAGACGTTAGATGACTGTTTGTCTAACTTGTTCACCTTTGTCATGCTGGAAGTGttattatacatgtttttttttttaataaataatttcaaaccCTA

Function

symbol description
nudc Predicted to enable unfolded protein binding activity. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in microtubule. Predicted to be active in cytoplasm. Orthologous to human NUDC (nuclear distribution C, dynein complex regulator).

NR:

description
PREDICTED: nuclear migration protein nudC

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218262.1 True 1262 mRNA 0.50 9 3496699 3501431
XM_043218263.1 False 1179 mRNA 0.50 8 3496699 3501432

Neighbor

gene id symbol gene type direction distance location
arid1ab LOC107712599,LOC107700714,LOC107550655,LOC107737764 coding downstream 58702 3383737 ~ 3437997 (-)
oprd1a oprd1a,LOC107688080,LOC107595906,LOC107732912,LOC107689567,LOC108411271 coding downstream 474341 3003992 ~ 3022358 (-)
maneal si:ch211-30b16.2,LOC107569868,LOC107686956,LOC107708724,LOC107719841,LOC107693995 coding downstream 612048 2876924 ~ 2884651 (-)
stmn1a LOC103471979,LOC105933928,LOC102781761,LOC107098265,LOC104924882,LOC103142368,LOC100709328 coding downstream 760569 2733736 ~ 2736130 (-)
cited4a LOC107689549,LOC107556893,LOC107595899,LOC107732920,LOC107675931 coding downstream 1238265 2253838 ~ 2258434 (-)
zgc:175136 LOC107700788 coding upstream 14025 3515457 ~ 3518515 (-)
tpbga tpbgl,LOC107700735,LOC107712598,LOC107550650,LOC107567595,LOC107689565 coding upstream 29812 3531244 ~ 3536293 (-)
LOC122323724 LOC107689534,LOC107567588,LOC107754929 coding upstream 53364 3554796 ~ 3565882 (-)
tmem200b si:ch211-204a13.2,LOC107714467,LOC107668712,LOC107754915,LOC107569305,LOC107689563,LOC107559402 coding upstream 252792 3754224 ~ 3759407 (-)
srsf4 srsf4,LOC107569308,LOC107559403,LOC107754925,LOC107689552,LOC107668713,LOC108229131 coding upstream 258425 3759857 ~ 3766404 (-)
G130232 ta,LOC107550642,LOC108411273,LOC107689566,LOC107700831,LOC104926085,LOC108272420 non-coding downstream 5563 3486222 ~ 3491136 (-)
LOC122323442 NA non-coding downstream 30077 3443008 ~ 3466622 (-)
G130219 NA non-coding downstream 56583 3439666 ~ 3440116 (-)
G130080 NA non-coding downstream 393337 3102953 ~ 3103362 (-)
G130078 NA non-coding downstream 402996 3093071 ~ 3093703 (-)
G130238 LOC107578025,LOC107689532,LOC107754917,LOC107712605,LOC107550649,LOC107700780 non-coding upstream 47504 3548936 ~ 3622500 (-)
G130249 NA non-coding upstream 83917 3585349 ~ 3585751 (-)
G130250 NA non-coding upstream 84712 3586144 ~ 3586619 (-)
G130252 NA non-coding upstream 87830 3589262 ~ 3591007 (-)
G130340 NA non-coding upstream 396629 3898061 ~ 3953014 (-)
zdhhc18b zdhhc18b,LOC107700701,LOC107737765,LOC107689541,LOC108413341,LOC107550656,LOC107570996 other downstream 116772 3363481 ~ 3379927 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other downstream 172871 3313389 ~ 3323828 (-)
G130083 LOC103461248,LOC102786159 other downstream 346910 3149154 ~ 3149789 (-)
G130041 LOC107687396,LOC107708727,LOC107595896 other downstream 585096 2908489 ~ 2911603 (-)
G130000 NA other downstream 663743 2825344 ~ 2832956 (-)
kdf1b LOC107700730,LOC107712602,LOC107550653,LOC107754920,LOC107567594,LOC107689538 other upstream 7402 3508834 ~ 3514679 (-)
tmem222b tmem222b,LOC105903612,LOC107550652,LOC107754919,LOC107567586,LOC107700749 other upstream 36009 3537441 ~ 3551825 (-)
polr2k NA other upstream 1038547 4539979 ~ 4541629 (-)
G130696 NA other upstream 1242140 4743572 ~ 4941832 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 1585812 5087244 ~ 5222883 (-)

Expression


Co-expression Network