seh1l (seh1l,LOC107668717,LOC107746927,LOC107748371,LOC107666589)


Basic Information

Item Value
gene id seh1l
gene name seh1l,LOC107668717,LOC107746927,LOC107748371,LOC107666589
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4378514 ~ 4387615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218276.1
CTGCGATAAAGCAGCGAGCGACGGTTTCAGTAAAGAAACATGGCACCGGTAGAGTTCACGGTTTCTGCTGAAGTTTAACCGAACAGCCCTCTGCTCTTTTATTAACCGAGTTGTGCGAGAGGGTTTCTCTGTTAAGAAGCAGCTTGGACGATGTTCGTCGCGAAAAGCATCGCGGCGGATCATAAAGATCTGATTCACGATGTTTCTTATGACTTTCACGGTCGGAGGATGGCGACCTGCTCCAGCGATCAGAGCGTCAAGGTCTGGGACAAAGGGGACGATGGAGAATGGCATTGTACTGCTAGCTGGAAGacTCACAGTGGCTCGGTGTGGAGGGTGACGTGGGCTCACCCTGAGTTTGGTCAGGTGCTGGCGTCTTGCTCCTTTGACCGCACCGCAGCTGTGTGGGAAGAGATCGTCGGGGAATCCAACGACAAGCAGCGGGGGCAAAGCCACTGGATCAAGAGGACCACGCTGGTGGACAGTCGGACGTCGGTGACCGACGTGAAGTTTGCGCCGAAGCACATGGGCCTGATGCTGACCACCTGCTCCGCGGACGGCGTGGTGCGCATCTACGAGGCCCCCGACGTGATGAACCTCAGCCAGTGGTCTCTGCAGCACGAGATCTCCTGCAAGCTCTCCTGCTCCTGCATCTCCTGGAACCCCTCCAGTTCCCGAGCTCATCCTCCGATGATCGCCGTGGGCAGTGACGACGGCAGCGTCACCTACAGTGGCAAAGTGCAAATCTATGAGTACAACGAAAACACCAGGAAGTACGCCAAAGCGGAGACGCTGATGACCGTGACCGAGCCGGTTCACGACATCTCCTTCGCTCCTAATCTGGGGAGATCCTTCCACGTGCTGGCCATAGCCACCAAAGACGTCCGTGTTTTCAAGCTTGTACCTTTAAGgAGAGAGAGCGTCAGCAGCTCTGGTCCCACTAAGTTTGAGGTGCAGGTGATGGCTCAGTTCGACAGTCACAACTCTCAGGTGTGGCGCGTGAGCTGGAACATCACCAGCACTCTTCTGGCCTCCTCTGGAGACGACGGATGTGTGCGGCTCTGGAAAGCTAACTACATGGATAACTGGAAGTGCACGGGGATCCTGAGAGGAGACGGCAGCCCGGTGAACGGCTCTTCTGGACACGCTGCGGCTCTGAGCGCGGCCGGCGTCCCTGGAGCCGCTCAGATGGTCGCCGGGGCCGCTTCTGCTGGCAGGTACTTCTTCCCTCACCTGGACTCCCCTCGAGCCGGATCTCGCCTGGCCCACCTCCTGCCTCCCCCCTTCCTCATCGAGCAAATGTACGAGTCTGACCCGTCCCACGCTCCCCAGCTCCGCCAGCGACACACGGCCACCTCCAGCCATCAAGCCCCCGAACACGACTGAGCACGACCCACACCGACCCGCTTCACGGCTCACCGAACGTGCCTTTCTCGTGTCCAGGGCGCAGGTTACCCTAAAAGAGGGAAATGATAATAAATCGGTAACACTTCACGATAAGGTGTCACCTGTTAACATGGACAAGCAATGAGCGGAACATTAATTacagcattcattcatttttgttgtcGCTAGTTACATTGTTTATTCGTGTTAGTACGCAGTGCGTTAACTTTAGCAAACGCAACTcgatattgattttaataaacgctgaaattagcattaaggAAGATTATTCCGCGGTCTGTCTGAATActggcttctgattggctggcggGTATGCAGTAAAACCGATTAATGCACAGGTAGTTACAGGTCCATAATGATGCGCTGCTTTAAttgataaacacaaacacactctctctctctcacacacacacacacacacacacacacacacacacacacacaaacttctcAACGCtactgttattaataaaatagcctaGAGATACCAGCTCGCCACTTTATATTTCTCAGCAACGAGGTAATTAAACACAGCTTGACTGTTTAGGCCGCACACACAGTTGCACTTCTCTTAATTTTCACAAACGGTATGGTTCATTCAAATAAACGCGATCTTACCGCACTGTTTCGTC
>XM_043218278.1
GCGATAAAGCAGCGAGCGACGGTTTCAGTAAAGAAACATGGCACCGGTAGAGTTCACGGTTTCTGCTGAAGTTTAACCGAACAGCCCTCTGCTCTTTTATTAACCGAGTTGTGCGAGAGGGTTTCTCTGTTAAGAAGCAGCTTGGACGATGTTCGTCGCGAAAAGCATCGCGGCGGATCATAAAGATCTGATTCACGATGTTTCTTATGACTTTCACGGTCGGAGGATGGCGACCTGCTCCAGCGATCAGAGCGTCAAGGTCTGGGACAAAGGGGACGATGGAGAATGGCATTGTACTGCTAGCTGGAAGacTCACAGTGGCTCGGTGTGGAGGGTGACGTGGGCTCACCCTGAGTTTGGTCAGGTGCTGGCGTCTTGCTCCTTTGACCGCACCGCAGCTGTGTGGGAAGAGATCGTCGGGGAATCCAACGACAAGCAGCGGGGGCAAAGCCACTGGATCAAGAGGACCACGCTGGTGGACAGTCGGACGTCGGTGACCGACGTGAAGTTTGCGCCGAAGCACATGGGCCTGATGCTGACCACCTGCTCCGCGGACGGCGTGGTGCGCATCTACGAGGCCCCCGACGTGATGAACCTCAGCCAGTGGTCTCTGCAGCACGAGATCTCCTGCAAGCTCTCCTGCTCCTGCATCTCCTGGAACCCCTCCAGTTCCCGAGCTCATCCTCCGATGATCGCCGTGGGCAGTGACGACGGCAGCGTCACCTACAGTGGCAAAGTGCAAATCTATGAGTACAACGAAAACACCAGGAAGTACGCCAAAGCGGAGACGCTGATGACCGTGACCGAGCCGGTTCACGACATCTCCTTCGCTCCTAATCTGGGGAGATCCTTCCACGTGCTGGCCATAGCCACCAAAGACGTCCGTGTTTTCAAGCTTGTACCTTTAAGgAGAGAGAGCGTCAGCAGCTCTGGTCCCACTAAGTTTGAGGTGCAGGTGATGGCTCAGTTCGACAGTCACAACTCTCAGGTGTGGCGCGTGAGCTGGAACATCACCAGCACTCTTCTGGCCTCCTCTGGAGACGACGGATGTGTGCGGCTCTGGAAAGCTAACTACATGGATAACTGGAAGTGCACGGGGATCCTGAGAGGAGACGGCAGCCCGGTGAACGGCTCTTCTGGACACGCTGCGGCTCTGAGCGCGGCCGGCGTCCCTGGAGCCGCTCAGATGGTCGCCGGGGCCGCTTCTGCTGGCAGaaaaaaagctcAGCTGATGCCAGGCTAACGGCATGCcgtgctgattggctgtttgctgcatGCTCGGGATTGGACCAAGACCTCACTGACCCTCACCTGAACTCTCGTCTAGCTACTAATCCACCGAAGGAGCCGTGCGGCGTGTTCAGCGCCACCTGCCTGACAAAGAGCCTTTACTGTGTGCTTCTAAACCAGTTATACACTAAACCCGATTCCCATCGATACTGACCTACTTATTAATCGTCCTGACGTCATGCGGTACTACTCacgtatttattttaacacagtCGGGTCAATTTCCACGAGTTTAGTCTGCATTCGCACCGAGCATGTCGTATGTAGCAGCgtttaaaggagcagttcacccaaaatcgAACtatattgttaacattttttcttctgtgaaacgcaaaagatgacattttttGAACTCCTCGTTTATCTGGTAAAGGGTGAACCGTGCCGTGGGTTTGAAGCCGCTAGCATGCAGTGTGGACAGCAGAGGGAGACACTATCATTCAGATCTGCTCAAAACATGCCCTTGGAATTACTAACATACTACGTTTTAATTGGTCACTCGCTGAATTAGCAGATGTCTTTTGTTACAGGAACCCAGATCGTGCTAAGAAACTATCTGGATGTTGTGCATCTTAGCGGGCAATGATGAAACCTCTGACACGGTATCTCTGTTAATAGACAAAAAGTTTCACAATTCAGGAGTTGGGTGCATAAGTAGTGGACCCTAAATCAAAAGCTGGACCCTGATCGTTATATACTGGAGATATTAAGAGCGCGTTCCCCTTGAAGGGCCACTTCAGACGGGAATTCAAAAGGAGCGCGTACAAACAGTTCTTCAAATGAACGCAACTTTTGCGAGTgtgctttttataaaataaagtttgtttttcagttctGA

Function

symbol description
seh1l Predicted to enable structural molecule activity. Predicted to be involved in several processes, including attachment of mitotic spindle microtubules to kinetochore; cellular response to amino acid starvation; and positive regulation of TORC1 signaling. Predicted to act upstream of or within several processes, including chromosome segregation; mRNA transport; and protein transport. Predicted to be located in lysosomal membrane. Predicted to be part of Seh1-associated complex and nuclear pore outer ring. Predicted to colocalize with kinetochore. Orthologous to human SEH1L (SEH1 like nucleoporin).

NR:

description
nucleoporin seh1

GO:

id name namespace
GO:0006999 nuclear pore organization biological_process
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031080 nuclear pore outer ring cellular_component

KEGG:

id description
K14299 SEH1; nucleoporin SEH1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218276.1 False 2039 mRNA 0.53 9 4378514 4387615
XM_043218278.1 True 2131 mRNA 0.52 9 4380691 4387613

Neighbor

gene id symbol gene type direction distance location
ldlrad4a ldlrad4a,LOC107668709,LOC107675658,LOC107566561,LOC107746928 coding downstream 2154 4303415 ~ 4376360 (-)
rnmt rnmt,LOC107668718,LOC107754922,LOC107566559 coding downstream 81757 4285292 ~ 4296757 (-)
mc5ra mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 coding downstream 111376 4244693 ~ 4267138 (-)
cthrc1a cthrc1a,cthrc1,LOC107746934,LOC107668704,LOC107675657,LOC107754923,LOC108438867,LOC108257304 coding downstream 160801 4211439 ~ 4217713 (-)
rims2b rims2,LOC107689551,LOC107754909,LOC107569304,LOC107668707,LOC108257276,LOC107559391,LOC107732136,LOC107675654,LOC105892072 coding downstream 179272 4074040 ~ 4199242 (-)
psmg2 psmg2,LOC107738327,LOC107748372,LOC107672829,LOC107550101 coding upstream 21118 4408733 ~ 4410934 (-)
grhl2b grhl2b,grhl2,LOC107738316,LOC107672862,LOC107748368,LOC107698657,LOC107552317,LOC107550099 coding upstream 44528 4432143 ~ 4450461 (-)
spag1a spag1a,LOC107738319,LOC107672845,LOC107748364,LOC107698654,LOC107550092 coding upstream 141909 4529524 ~ 4537983 (-)
adck5 adck5 coding upstream 185833 4573448 ~ 4580921 (-)
LOC122323748 pqlc1,LOC107698648,LOC107672885 coding upstream 319707 4707322 ~ 4735660 (-)
G130465 NA non-coding downstream 78188 4298509 ~ 4300326 (-)
G130463 NA non-coding downstream 90644 4287488 ~ 4287870 (-)
G130459 NA non-coding downstream 111090 4267179 ~ 4267424 (-)
LOC122323452 NA non-coding downstream 146099 4228999 ~ 4232415 (-)
G130360 NA non-coding downstream 168241 4187442 ~ 4210273 (-)
LOC122323668 NA non-coding upstream 16402 4404017 ~ 4405900 (-)
G130494 NA non-coding upstream 20579 4408194 ~ 4408394 (-)
G130482 NA non-coding upstream 82144 4469759 ~ 4484396 (-)
G130476 pabpc1b,LOC107698655,LOC107748365,LOC107550093,LOC107738317 non-coding upstream 102645 4490260 ~ 4491487 (-)
G130690 NA non-coding upstream 351190 4738805 ~ 4744555 (-)
tmem222b tmem222b,LOC105903612,LOC107550652,LOC107754919,LOC107567586,LOC107700749 other downstream 826689 3537441 ~ 3551825 (-)
kdf1b LOC107700730,LOC107712602,LOC107550653,LOC107754920,LOC107567594,LOC107689538 other downstream 863835 3508834 ~ 3514679 (-)
zdhhc18b zdhhc18b,LOC107700701,LOC107737765,LOC107689541,LOC108413341,LOC107550656,LOC107570996 other downstream 998587 3363481 ~ 3379927 (-)
LOC122323345 fam46bb,LOC107712594,LOC107700817,LOC107737782,LOC108413340,LOC103370123 other downstream 1054686 3313389 ~ 3323828 (-)
G130083 LOC103461248,LOC102786159 other downstream 1228725 3149154 ~ 3149789 (-)
polr2k NA other upstream 152364 4539979 ~ 4541629 (-)
G130696 NA other upstream 355957 4743572 ~ 4941832 (-)
LOC122323502 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 699629 5087244 ~ 5222883 (-)
G130744 sema4ab,LOC107702572,LOC107672813,LOC107598230,LOC107731578,LOC107705066 other upstream 753890 5141505 ~ 5260164 (-)
G130763 NA other upstream 857738 5245353 ~ 5252189 (-)

Expression


Co-expression Network