vps28 (vps28,LOC107696523,LOC107592928,LOC107754273)


Basic Information

Item Value
gene id vps28
gene name vps28,LOC107696523,LOC107592928,LOC107754273
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14431702 ~ 14434903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218280.1
CGTCACGTCAGTTTTCTACAGTGGGTGACGTCATTATAAGGTTCATTATGTTTCACGGAATACCTGCCTCTGGAGTGATGGGAGGAGCACCTGCCAACAAGCCAGAACTCTATGAGGAAGTGAAATTGTACAAAAAtgccagagaaagagaaaaGTATGACAACATGGCAGAGTTGTTTGCTGTGGTCAAAACACTTCAGGCCCTGGAAAAAGCCTACATTAAGGATTGTGTGACTCCAAACGAataCACAGGAGCTTGCTCAAGATTGCTTGTCCAGTACAAGGCTGCTTTCAAACAAGTCCAGGGATCGGATGTGGGCTCCATTGATGACTTTTGTAGGAAATACAGACTGGACTGTCCGCTGGCTATGGAAAGAATCAAAGAGGATCGACCGATCACCATTAAGGATGACAAGGGCAACCTGAATCGCTGCATTGCAGACATAGTTtctCTCTTTATCACAGTTATGGACAAACTTCGACTTGAGATTCGTGCCATGGATGAGATCCAGCCTGACCTGAGAGAGCTCATGGAGACCATGAATAGAATGAGCAACATGCCTCCAGATTCAGAGGCCAAAGACAAAGTCAGTCTCTGGTTAACCACACTGAGCAGCATGTCTGCGTCTGATGAGCTGGATGACTCCCAGGTTCGCCAGATGCTGTTTGACCTGGAGTCTGCCTACAACGCCTTTAATCGTTTCTTACACTCTTCTTAAATGTTCCTTCCCTCTCTGAGCTCATTCTTCCCCTTTTCAGAAGCGgttgtctttttcattttcccTATTTTGCCCGTGTCTTTTGTAGGAATGTagaatattaaatcaaattagaGCACTGCTTACTAAGGTTTATGTTGTTCAGTAATACAATCACGATTATATTATTCACAGATTTGAAATTTAatagtagatttttttaatgtaaagagATTTTTCTATCTCATGGTAGTCTGAAAGTGTTCTCTTGAATGGCAATAGCGAATACAATAGCCAATAGAAAAGCTATAGAGGGCGTTCTAGGAAGAAGTATATTATAGGCAAAAGTTGCTTGCCCTCTATACATACACGTGTTGAATGAGCATACGGATTGATCGTTTATGGATCTCACAATATCTTGTACAAAAAGGTCTGATACTGAATTCTCAgtactgcattttatttcaaatggaCGTTTTCCCTAGCTGCAcactttccttttccttttttttttaaatagatgtttTCCAGTGTTTAAAGGAGACAATGTTAAATGCtctcattcatttacttttcttGGTTGATAACTTGACTTTTATAAACGCTTGATTAATAACTTACTCTTTCCTCGGCATGGTGTTGGTTTTATGTAATAaggcatatttattaaatgacctatgtaaataaaatagttttgaaataaacCACATAATACTTTGAAAAACAA

Function

symbol description
vps28 Acts upstream of or within retina development in camera-type eye. Predicted to be located in endosome. Predicted to be part of ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).

NR:

description
vacuolar protein sorting-associated protein 28 homolog isoform X1

GO: NA

KEGG:

id description
K12184 VPS28; ESCRT-I complex subunit VPS28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218280.1 True 1425 mRNA 0.39 10 14431702 14434903

Neighbor

gene id symbol gene type direction distance location
cap2 cap2,LOC107706226,LOC107754274,LOC107592045 coding upstream 2885 14408989 ~ 14428817 (+)
rbm24a rbm24a,LOC107696536,LOC107592929,LOC107706227,LOC107654717,LOC107754275,LOC107591968 coding upstream 25799 14394636 ~ 14405903 (+)
stmnd1 LOC107592082,LOC107706159,LOC107654715 coding upstream 40359 14387755 ~ 14391343 (+)
utp23 utp23 coding upstream 87825 14342609 ~ 14343877 (+)
lrrc14b lrrc14b,LOC107706156,LOC107654673,LOC107742820,LOC107696555 coding upstream 789633 13638212 ~ 13642069 (+)
mapk15 mapk15,LOC107706228,LOC107654719,LOC107696521 coding downstream 420 14435323 ~ 14442741 (+)
grinaa grina,grinaa,LOC107706230,LOC107654720,LOC107592938,LOC107754271 coding downstream 8564 14443467 ~ 14454821 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC107754284,LOC107654669,LOC107696534,LOC107592974,LOC108256818 coding downstream 22743 14457646 ~ 14472401 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 coding downstream 38386 14473289 ~ 14495473 (+)
ext1c ext1c,ext1,LOC107706241,LOC107654729,LOC107592945,LOC107688378,LOC107754264 coding downstream 403724 14838627 ~ 14886764 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding upstream 263218 14168095 ~ 14168484 (+)
G132910 NA non-coding upstream 325441 14097276 ~ 14106261 (+)
G132884 NA non-coding upstream 583587 13846782 ~ 13848115 (+)
G132774 NA non-coding upstream 870257 13561167 ~ 13561445 (+)
G132773 NA non-coding upstream 875023 13555011 ~ 13556679 (+)
G133068 NA non-coding downstream 322721 14757624 ~ 14757976 (+)
LOC122324050 NA non-coding downstream 587372 15022275 ~ 15035422 (+)
G133109 ppce,LOC107602379,LOC107688393,LOC107706142,LOC107592053,LOC107654745,LOC107710331 non-coding downstream 761154 15196057 ~ 15281004 (+)
G133129 NA non-coding downstream 939597 15374500 ~ 15378019 (+)
G133253 NA non-coding downstream 1025435 15460338 ~ 15460706 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 1094953 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 1405676 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 2006624 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 2318805 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 2907821 11522229 ~ 11523881 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 352641 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 399698 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 643551 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 873824 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 920705 15355608 ~ 15361845 (+)

Expression


Co-expression Network