otud6b (otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366)


Basic Information

Item Value
gene id otud6b
gene name otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9912365 ~ 9915059 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218287.1
CCCGGATGTGTTTGGTTTCTGTGTTCCCATTGAATCCATGCGCTTGGCTCGCAGAATAGATCATTTGAATTAAGAATGAATTGATTTCATTGAGCTGAAACCACAATTCAGTCAATGCAGAGTAATAACCCAAACTGAtggaaatgaataatatatttatcttttagaTCCActaagtaaacattttatttctttgaatatTTCGTTAATTTTGACATGGAGGAAGTGGAGACAGCAGAGGAGCTGTTAGCCAAACAGCATCGCAAGGAAAAGAAAGACCTGCAAGCAAAAATACAAAGTATGAAAAATGCtattcccaaaaatgacaagaaGAGGAGGAAACAGCTGACCGAAGACATCGCCAAACTAGAGGCTGAACTCACTCAGAAACATGAAAATGAGCTCAAACTACTTCAGAACTCTTCCTCAGTGGAAGAGGTTTCAAATGCAATGGTTTCCGTCAGTCTTGCCAGTGATGTGGAAACAACGGATTCAAGCAAGCAAGCTCGGACATCTAAAGCCCAGAAGAGACGGGACAAAAAGGCAGCTCTTGAGAAGGAAAGGGAGATTCGGATTGCTGAGGCAGAAGTGGAGAATCTCAGCGGTTCCCGTCATCAGGAGGGTCTGAAGCTGAGACAGAAGCTGATGGAGAGACACCTGCAGATCAAAGAGATCTCCTCGGATGGCCACTGCATGTATCGCGCTGTGGAGGATCAGCTGACGGAGCGAGGCGCTCCTCTCGGCCCTAAAGAGCTTCGGGCTCAAACAGCTCAGTACATGAGGAGCCACGCAGACGACTTCCTGCCGTTCCTCACTGACCCTAATTCAGGAGACATCTACACTGCAGATGAGTTTGAGAAATACTGCAATGATGTTGCAGATACAGCTGCTTGGGGCGGACAGTTAGAGTTAAAAGCCCTTTCGCAGGTCCTCCAGCTACCGATAGAAGTCATTCAGGCAGAGTCCCCTTCTATTATTATTGGTGAAGAATATGACAAGCCACCACTCACACTCGTTTACATGCGGCATGCTTATGGACTTGGTGAACACTACAATTCTGTGGAGCCCCTGAAAGACTTGGCAAATGAGGAAGAGGGCTGACCCATCATTGACGCGCATTAATATATGCATCTGTGCATATTTAGCCTAGAAGTGGAAGTGGACCTTCTGGAATATGATTCGGTTTTGCTAGGATCAGCCGATTCGGTCAGGACGCTCACAGAGGATGATGAAATAACACACGCCGGTGCAGTGGACAAGCTTCGTGCAACAAGTCCATGCGTGCCAgtgttatttatgaataaactgCTATGTgctttgtgtcatttttagtaataaaatttTAGCAATTTGCTCTAAGAGGTGGTCATGCTAACGCTGTTAAATAAAGAACTTTATATCAATGAAAA

Function

symbol description
otud6b Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including OTUD6B (OTU deubiquitinase 6B).

NR:

description
OTU domain-containing protein 6B

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K18342 OTUD6; OTU domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218287.1 True 1409 mRNA 0.44 7 9912365 9915059

Neighbor

gene id symbol gene type direction distance location
lrrc69 LOC107724328,LOC107556328,LOC107653817,LOC107702067 coding downstream 623 9909104 ~ 9911742 (-)
trib1 trib1,LOC107565192,LOC107724318,LOC107702074,LOC107710180,LOC107556392,LOC107653840 coding downstream 273383 9631241 ~ 9638982 (-)
klhl38a klhl38a,LOC107724354,LOC107565193,LOC107702087,LOC107556389,LOC103030765,LOC108424967,LOC108272409,LOC105907674 coding downstream 327592 9579575 ~ 9584773 (-)
azin1b azin1b,LOC107724288,LOC107702092,LOC107565195,LOC107710131,LOC107653834 coding downstream 384378 9521341 ~ 9527987 (-)
rrm2b rrm2b,LOC107556385,LOC107702093,LOC107724293,LOC107565196,LOC108425040 coding downstream 391226 9516444 ~ 9521139 (-)
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding upstream 91982 10007041 ~ 10011759 (-)
c19h18orf21 LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336 coding upstream 97349 10012408 ~ 10025651 (-)
sla1a LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725 coding upstream 459652 10374711 ~ 10378838 (-)
ndrg1a ndrg1a,LOC107710403,LOC107670279,LOC107724345,LOC107653857,LOC107556406 coding upstream 477665 10392724 ~ 10402213 (-)
si:rp71-45k5.2 LOC107724323,LOC107670287,LOC107574714 coding upstream 495018 10410077 ~ 10411619 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding downstream 21842 9877452 ~ 9890523 (-)
LOC122323520 NA non-coding downstream 137902 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 264341 9647549 ~ 9648024 (-)
G131903 fam91a1,LOC107710596 non-coding downstream 267518 9603121 ~ 9644847 (-)
G131899 NA non-coding downstream 320509 9591326 ~ 9591856 (-)
LOC122323594 NA non-coding upstream 27077 9942136 ~ 9945714 (-)
G132128 NA non-coding upstream 283514 10198573 ~ 10255238 (-)
LOC122323417 NA non-coding upstream 865405 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 1255967 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 1569744 11484803 ~ 11487989 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 247906 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 603013 9308720 ~ 9309352 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other downstream 1125636 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other downstream 1173579 8727259 ~ 8738786 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other downstream 1252879 8654498 ~ 8659486 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other upstream 14807 9929866 ~ 9984305 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other upstream 376213 10291272 ~ 10311936 (-)
ctnnal1 NA other upstream 400562 10315621 ~ 10362527 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 825315 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 1255211 11170270 ~ 11170913 (-)

Expression


Co-expression Network