sgo1 (LOC107654748,LOC107706259,LOC107688364,LOC107592057,LOC107578328,LOC107602351,LOC107710334)


Basic Information

Item Value
gene id sgo1
gene name LOC107654748,LOC107706259,LOC107688364,LOC107592057,LOC107578328,LOC107602351,LOC107710334
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15371304 ~ 15376482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218315.1
AGAGCTCGCAGCGCACGATTTCGAACATCAACATCCTCGAGGGGAGATACGCCGGAGAACCAACTCACGCGAAATAAACAACTTACGCGCTCTTCGGCGTAAAGCAGCTGTTTATTCATCTTATTATTGTGGCAAATAAGTGGGTAAAGCGTACGCCGTGTTTTGGTTAAGCTTGGCGTGATATGGAGATTAACGTTCACCCGTGAACGGCTGATTTTAACACTGGACTAGTTCGCGAGCAGCCCAGCCATGGTTCGGGAGCGGGTGGTGCAGAAAAAGTCCTTCCAGCAGAGTCTGGACGACATCAAggacaaaatgaaagaaaagagaaacaagCGTCTCGCCAACGCTTTAGCTGCCAGCCGCGGCCTGTCAAAActgaagaacaaaaacacagCTACAGTGAAGCCATTTGTCCTGAAGAGCGTCCAGGTGAATAACAAAGCTCTTGCAGTAGCCCTgcagacagagagggagaaggTACGGCAGGCGCAAGGGGTCATCCTGCAGCTCAAGAAAGAAAGGCAAGCACTCATCTTTCACCTGCTGATGCTGAAGAGGACGCTTAAAGATCGAAGACCTGCTGAAAGTGCCCAGGTTTCTCCCATTGAGACGAGTTCACCAACTCTACCTCAGCCCATCAGTCCTAAAACAGTACACGTGGTTGGGACAGATATCCCTGATCATCACTCAGCAGAACCACCTTTTAATGCAGAGGCTGTTCCAGGTTGTCGCAGCGACCGACAGGTTTCTTTGCCCCCCACAGTAGGAACAAGACGAAAGAGACGCTCCGAGGTTGTGAGGAGACAAAGCTCACGCTTTGACTCTGGCAGGGTCGAGAAATGTGACTCGCTAGATGTGAAAAGTGGAGACGCTATTGATAGCAGACAAGAGGTAGAGACAAACGCACCATTGGAGGAGGTCTGTCATGAGCGGGAAGAGCTTAACAAGGAACAAGCTGGACATAAAACAGGGCCGAACTATGAGTTCAGCCTAGAGGTTTCTGAACTCCCAGCCGTCCAGCACTCGACTCCTGAGCCCCCCCAGCGGCCCACCAGACAGCCCAAGAAGAAACCCACCCAAGCCGCTCCCCGCCCCAAACCAGAGAGGGGACGCAAACCAGACCGAGCGCCGCTAAAGAAACCGTGGGACAACCCCAAACCCCGTGCTCGCTCTAAGAGCCGGGACCGATCTCAGAGTCGTGCGAGAGCAGCGGCGCCTCCGCCTGCCGATCGCCTTAACTCCTCGTTGGGTGGCAATGACACCTTTGACTTCGACTGTGAAGAGGCCATCCATCTAACGCCTTTCAGAGCGGGAGCCAAAGCTGTGGAGAAACCATCGCCTGACGCTCCGGTTAAAAAAGACGAGGTCCTGCCCAGTCCCGTTGCCATGGAGACCAACACCAGCCTCTCAGAAGATGAACAGGACGCAGATGATTCTCCTTATGTACCGAAGAGGAGATCCAGAAGAGCTCGGAGTCCACCGCCCAGACGGGCTCGCTCTAAAAGGCGGTCTGCTCAAGtggcaaaagaaaatattagaCAAAAGCAGGGCCATATTGAAGTAGAGCACATAGAAAAAAGTGGGCCTGAAATGGAAGAAATTGACCTGCATCTCCACGGTGATCTCAACCCAGGCCTTCTGCTTCCATGTTCACCAGTTTGTGTTCTTCCTGAGAatcccagccaatcagaaccaAGCCAGGAGATCTGCCAAGTGCCGTCTTCTGTTGTTCCTTTGGAGTCTCCTGGTGGAGAGGCGGAGCTTATGATGATTGACTGCCCAATATTTGACTTTTCAAAGCACTCTTGCAGCTCACGCGGCCAGGAAAATGAAATGCCCTTGGTCAATAGAGGCAGAAGAAAagGTGGGCTGGTTGTTCGCTCCTTTCTGGGCTTGGGTTTGAGTGATGTGACCAATCTCTCCCCTGCAGCCTATCAGAAGCCCATGTCTGCTCAAAACACCCCTCAAAGCTCCAGTCGTAAGCGCCGCTGTACGAGTACCGTCAACTACAAGGAGCCCTCGATCAACTCgaaacttAGGCGAGGTGATAAATTTACAGACACCCGTTTCCTGCGGTCCCCCATTTTCAAACAGAAGCCCACTTCCCGTCGGAGTTCACTTAAAAAGCTGGAATTATATAACGAGTCTTTTGTGGGTTGTCGCTGAATAACTGATGTAAATAATAGGACCTTTTACCATGATTCAGCTTCATAGAATTACAGTGCTATCTGTCTGAAcctgtgcattattttttttctgcagatttttaACTGCTGTGTAATTGAATTTGTAATTGTTTGACTTTGTGAATTTTAATAAAGttcttttaatttgttgttcccacttaaaattaaacagttacagaaaatgaactgaaaacttTTTATTACACTTGTAGCTGGAAGCAGAggattttaatttaacttgtgTCAAGACCATTCAACTGCCAAGAATCATAAATATTCAGTaagaccattttaaaatgaagcagCTGAGTGTTGGCATGTCGGTCTAAACTGTGTGGTACCAATAAAGTAAAACAAGCTGAAATTGTTTCTCATGTCTAACTGCTTTTCAAGCTTGTTACATTGTGGTAGATAAGTCAGGACCAAACTAAACTTTTGCATTATGTGCATAGCAGACATAGCTTATTTCACCAGCCCAAACTTTAGCACTTCATTTTGTTAATGCTTTTCAGTGAAGAACTggtttaacattattataagtCCATAATTCATTAAGATTTCTTAAAGTTATTCCATTCATGGAATATGAACAAGATTCCTAATTCATGAAACAAAGGTGTTAAGGTTCGATTTAACTACTATCTGTAAATactcaacaaaaaaaccttACTGCTTACAtcataattagctttttttttgtaacatttct
>XM_043218316.1
CAGAGCTCGCAGCGCACGATTTCGAACATCAACATCCTCGAGGGGAGATACGCCGGAGAACCAACTCACGCGAAATAAACAACTTACGCGCTCTTCGGCGTAAAGCAGCTGTTTATTCATCTTATTATTGTGGCAAATAAGTGGGTAAAGCGTACGCCGTGTTTTGGTTAAGCTTGGCGTGATATGGAGATTAACGTTCACCCGTGAACGGCTGATTTTAACACTGGACTAGTTCGCGAGCAGCCCAGCCATGGTTCGGGAGCGGGTGGTGCAGAAAAAGTCCTTCCAGCAGAGTCTGGACGACATCAAggacaaaatgaaagaaaagagaaacaagCGTCTCGCCAACGCTTTAGCTGCCAGCCGCGGCCTGTCAAAActgaagaacaaaaacacagCTACAGTGAAGCCATTTGTCCTGAAGAGCGTCCAGGTGAATAACAAAGCTCTTGCAGTAGCCCTgcagacagagagggagaaggTACGGCAGGCGCAAGGGGTCATCCTGCAGCTCAAGAAAGAAAGGCAAGCACTCATCTTTCACCTGCTGATGCTGAAGAGGACGCTTAAAGATCGAAGACCTGCTGAAAGTGCCCAGGTTTCTCCCATTGAGACGAGTTCACCAACTCTACCTCAGCCCATCAGTCCTAAAACAGTACACGTGGTTGGGACAGATATCCCTGATCATCACTCAGCAGAACCACCTTTTAATGCAGAGGCTGTTCCAGGTTGTCGCAGCGACCGACAGGTTTCTTTGCCCCCCACAGTAGGAACAAGACGAAAGAGACGCTCCGAGGTTGTGAGGAGACAAAGCTCACGCTTTGACTCTGGCAGGGTCGAGAAATGTGACTCGCTAGATGTGAAAAGTGGAGACGCTATTGATAGCAGACAAGAGGTAGAGACAAACGCACCATTGGAGGAGGTCTGTCATGAGCGGGAAGAGCTTAACAAGGAACAAGCTGGACATAAAACAGGGCCGAACTATGAGTTCAGCCTAGAGGTTTCTGAACTCCCAGCCGTCCAGCACTCGACTCCTGAGCCCCCCCAGCGGCCCACCAGACAGCCCAAGAAGAAACCCACCCAAGCCGCTCCCCGCCCCAAACCAGAGAGGGGACGCAAACCAGACCGAGCGCCGCTAAAGAAACCGTGGGACAACCCCAAACCCCGTGCTCGCTCTAAGAGCCGGGACCGATCTCAGAGTCGTGCGAGAGCAGCGGCGCCTCCGCCTGCCGATCGCCTTAACTCCTCGTTGGGTGGCAATGACACCTTTGACTTCGACTGTGAAGAGGCCATCCATCTAACGCCTTTCAGAGCGGGAGCCAAAGCTGTGGAGAAACCATCGCCTGACGCTCCGGTTAAAAAAGACGAGGTCCTGCCCAGTCCCGTTGCCATGGAGACCAACACCAGCCTCTCAGAAGATGAACAGGACGCAGATGATTCTCCTTATGTACCGAAGAGGAGATCCAGAAGAGCTCGGAGTCCACCGCCCAGACGGGCTCGCTCTAAAAGGCGGTCTGCTCAAGtggcaaaagaaaatattagaCAAAAGCAGGGCCATATTGAAGTAGAGCACATAGAAAAAAGTGGGCCTGAAATGGAAGAAATTGACCTGCATCTCCACGGTGATCTCAACCCAGGCCTTCTGCTTCCATGTTCACCAGTTTGTGTTCTTCCTGAGAatcccagccaatcagaaccaAGCCAGGAGATCTGCCAAGTGCCGTCTTCTGTTGTTCCTTTGGAGTCTCCTGGTGGAGAGGCGGAGCTTATGATGATTGACTGCCCAATATTTGACTTTTCAAAGCACTCTTGCAGCTCACGCGGCCAGGAAAATGAAATGCCCTTGGTCAATAGAGGCAGAAGAAAagCCTATCAGAAGCCCATGTCTGCTCAAAACACCCCTCAAAGCTCCAGTCGTAAGCGCCGCTGTACGAGTACCGTCAACTACAAGGAGCCCTCGATCAACTCgaaacttAGGCGAGGTGATAAATTTACAGACACCCGTTTCCTGCGGTCCCCCATTTTCAAACAGAAGCCCACTTCCCGTCGGAGTTCACTTAAAAAGCTGGAATTATATAACGAGTCTTTTGTGGGTTGTCGCTGAATAACTGATGTAAATAATAGGACCTTTTACCATGATTCAGCTTCATAGAATTACAGTGCTATCTGTCTGAAcctgtgcattattttttttctgcagatttttaACTGCTGTGTAATTGAATTTGTAATTGTTTGACTTTGTGAATTTTAATAAAGttcttttaatttgttgttcccacttaaaattaaacagttacagaaaatgaactgaaaacttTTTATTACACTTGTAGCTGGAAGCAGAggattttaatttaacttgtgTCAAGACCATTCAACTGCCAAGAATCATAAATATTCAGTaagaccattttaaaatgaagcagCTGAGTGTTGGCATGTCGGTCTAAACTGTGTGGTACCAATAAAGTAAAACAAGCTGAAATTGTTTCTCATGTCTAACTGCTTTTCAAGCTTGTTACATTGTGGTAGATAAGTCAGGACCAAACTAAACTTTTGCATTATGTGCATAGCAGACATAGCTTATTTCACCAGCCCAAACTTTAGCACTTCATTTTGTTAATGCTTTTCAGTGAAGAACTggtttaacattattataagtCCATAATTCATTAAGATTTCTTAAAGTTATTCCATTCATGGAATATGAACAAGATTCCTAATTCATGAAACAAAGGTGTTAAGGTTCGATTTAACTACTATCTGTAAATactcaacaaaaaaaccttACTGCTTACAtcataattagctttttttttgtaacatttct

Function

NR:

description
shugoshin 1-like isoform X1

GO: NA

KEGG:

id description
K11580 SGOL1; shugoshin-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218315.1 True 2898 mRNA 0.47 9 15371305 15376482
XM_043218316.1 False 2833 mRNA 0.46 9 15371304 15376482

Neighbor

gene id symbol gene type direction distance location
crybg2 LOC107654746,LOC107706257,LOC107592054 coding upstream 21057 15327667 ~ 15350247 (+)
LOC122324124 LOC107706255,LOC107654747,LOC107591987,LOC107688367,LOC107710332 coding upstream 51534 15313857 ~ 15319770 (+)
LOC122323516 LOC107706254,LOC107654743,LOC107710329,LOC107688368,LOC107602377 coding upstream 94830 15232063 ~ 15276474 (+)
LOC122323313 ext1c,LOC107706241,LOC107654729,LOC107592050,LOC107754264,LOC107592945,LOC107688378 coding upstream 144621 15211167 ~ 15226683 (+)
cdca8 cdca8,LOC107591982,LOC107592949,LOC107654740,LOC107754257,LOC107688370 coding upstream 409734 14958607 ~ 14961570 (+)
trnap-agg_21 NA coding downstream 2988 15379470 ~ 15379541 (+)
LOC122324102 LOC107654690,LOC107706166,LOC107592089,LOC107602352 coding downstream 4155 15380637 ~ 15384405 (+)
topaz1 topaz1,LOC107706144,LOC107736171 coding downstream 12518 15389000 ~ 15398843 (+)
si:ch1073-376c22.1 LOC107710310 coding downstream 24083 15400565 ~ 15404546 (+)
LOC122323726 ctnnb1,LOC107706261,LOC107654753,LOC107710337,LOC107688361,LOC107592060,LOC103034575,LOC108414240 coding downstream 93102 15469584 ~ 15481200 (+)
G133109 ppce,LOC107602379,LOC107688393,LOC107706142,LOC107592053,LOC107654745,LOC107710331 non-coding upstream 90300 15196057 ~ 15281004 (+)
LOC122324050 NA non-coding upstream 335882 15022275 ~ 15035422 (+)
G133068 NA non-coding upstream 613328 14757624 ~ 14757976 (+)
G132916 NA non-coding upstream 788888 14175839 ~ 14582416 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding upstream 1202820 14168095 ~ 14168484 (+)
G133253 NA non-coding downstream 83856 15460338 ~ 15460706 (+)
G133256 NA non-coding downstream 105516 15481998 ~ 15483517 (+)
G133265 NA non-coding downstream 172362 15548844 ~ 15549137 (+)
G133276 NA non-coding downstream 206723 15583205 ~ 15606585 (+)
G133270 LOC107748653,LOC107592000,LOC107654766,LOC107688348,LOC107710349 non-coding downstream 287114 15663596 ~ 15664196 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other upstream 9459 15355608 ~ 15361845 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other upstream 57427 15308727 ~ 15313877 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other upstream 158874 14787544 ~ 15212430 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other upstream 178738 15078454 ~ 15192566 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other upstream 533335 14834601 ~ 14837969 (+)
cckb cck,LOC107592091,LOC107654691,LOC107706167,LOC107688363 other downstream 44653 15421135 ~ 15424497 (+)
G133266 LOC107748647,LOC107591995 other downstream 193182 15569664 ~ 15577981 (+)
aste1b aste1,LOC107654763,LOC107688353,LOC107710346,LOC107580865 other downstream 243777 15620259 ~ 15626187 (+)
hoxa5a hoxa5a,LOC107654773,LOC107592096,LOC107710354,LOC107688408,LOC107602374,LOC107748660 other downstream 398190 15774672 ~ 15776784 (+)
LOC122323320 NA other downstream 501643 15878125 ~ 15879267 (+)

Expression


Co-expression Network