LOC122324110 (crtap,LOC107593591,LOC107706152,LOC107670137,LOC107696527,LOC107591617,LOC107742876)


Basic Information

Item Value
gene id LOC122324110
gene name crtap,LOC107593591,LOC107706152,LOC107670137,LOC107696527,LOC107591617,LOC107742876
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13139261 ~ 13142966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218328.1
ttagTAAATcactgcaatgtttttttagctGCATGGGGGAAGGGTGCGTCCTGACTGACTTTGGGGACGTGGAGTGGCCGCGGAGCGGGCGGGTCTTGTGCTCTCGCGCTCCTGCGTACTTTGGGAATCCCGTGCGGGACCATGGCCTCCTCGTCGCGCTGCCTCCGGCTCGCCTtccttttatttagtttttccgTTTGCGTTCTCGCGCAGTATGAGAAATACAACTTTCGCAGTTTCCCACGGCACGAGCTCATGCCCCTGGACTCGGCGTACCGACACGCTTTAGACCAGTACAGTGAGGAGAAGTGGCCCGAGAGCGTGGAGTTTCTGGAGATGAGTCTCCGGCTGTACCGGCTGCTCCGGGACAGCGAGGCCTTCTGTAACCTCAACTGCAGCACGGTGCGCCTCGACGACGAGACGCGCTTCAGCGACTTCCCCGAACTGCAGGCCTTCGGGAACGTGATGAAGCGAGCCCAGTGTCTGAAGCGATGCAAGCAGGGCTTACCTGCCTTCAGACAGACGCTCCCCAGCCGCGAAACCGTCGAGGAGTTTGAGAAACGAGAGCCCTACAAGTACCTGCAGTTTGCTTACTTCAAAAGTGATAATTTGGCCAAAGCTGTATCTGCAGCGTACACGTTCCTCTTGAAGCATCCCGATGATGAGATGATGCAGAGAAACATGAACTATTACAAGAGTTTACCTGGAGCTGATGAACATATGAAAGACCTGGAGACCAAGTCATATGAGacaCTGTTCATTCGGGCCGTCCGGGCGTACAATGGTGATAACTTcagaacatcagtgtcagatatGGAGCTGGCACTGAGAGATTTTTTCAAAGTGTATGATGAGTGCATCGCAGCGTCAGAGGGATCCAGGCAGATCAAAGACTTCAAAGACTTTTACCCATCCGTTGCAGATCATTACGCAGAGGTTCTGGAGAGAAAAGTTCGCTGTGAGAGTGATCTCACGCCGATTGTAGGTGGATTTGTTGTTGAGAAATTTGTGGCAACCATGTACCACTACCTCCAGTTtgcttattataaatTGAATGATCTGAAGAACGCTGTACCGTGTGTGGCCAGCTACATGCTCTTTGACCCCAGTGATGAGGTGATGAAGAATAATGTCGAGTATTATCGGTTCCACAGAGAAAAATTTGGTCTGGCCGATGAGGATTTCTTCCCTAGAGCGGAAGCAGTACGGTACCACAATCAGACCACGCTACAGCTGCAGATGCTAGAGTTCGCCAAACAGAAGTTACAGTCAGATGATGAGgGTGAAGTCTTAGAGTTTCTTGATGAATATCTCGTTGCTGAGGATGAATAAGAAAATGATTTGCACTGAAACgaaaacattgtgaaaaagaCCATAAAGTTTTCTCCAGCCCgtaccatttttgtttttgtatttattttagggGTTGGTGATTGGAAGAGTTGATATCTTTTAACTGTACGCATCtgtacttacatttacacaTGTAAGTACAGAGTATGCACCACAAgccaaaagattttaattttagtccCTGTCAATTTTACTGTATGTCAGAGAAAGcaaagatgtgtttttattttgttgttggatTGCTTTTGTATGCTGAATACAACCCGAGCAACGTTGAACCATGTGAAGATATCCAAGCAGAATTGAGCCCCAAGAACTGgttaaacactgaaaatgtttttttgtgggttttttttggctgaTTGTTACAGATGTGGATGCTGTTGCAATAAATAATATGGATGAAAACGCTT

Function

symbol description
crtap Predicted to contribute to collagen binding activity. Predicted to be involved in collagen fibril organization and peptidyl-proline hydroxylation to 3-hydroxy-L-proline. Predicted to be active in endoplasmic reticulum. Is expressed in notochord; otic vesicle; pectoral fin; periderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 7. Orthologous to human CRTAP (cartilage associated protein).

NR:

description
PREDICTED: cartilage-associated protein-like

GO: NA

KEGG:

id description
K19606 CRTAP; cartilage-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218328.1 True 1766 mRNA 0.47 7 13139261 13142966

Neighbor

gene id symbol gene type direction distance location
si:dkey-166k12.1 si:dkey-166k12.1,LOC107706180,LOC107593577,LOC107670044 coding upstream 25180 13104681 ~ 13114081 (+)
pogza NA coding upstream 40224 13090763 ~ 13099037 (+)
anp32e anp32e,LOC107706176,LOC107669588,LOC107731392,LOC107696590 coding upstream 79951 13053757 ~ 13059310 (+)
LOC122324201 kcnq4,LOC107593542,LOC107706174,LOC107591607 coding upstream 118212 12980075 ~ 13021049 (+)
nfyc nfyc,LOC107593541,LOC107696595,LOC107591605,LOC107731465 coding upstream 165745 12952457 ~ 12973516 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding downstream 13298 13156264 ~ 13167433 (+)
clasp2 clasp2,LOC107669402,LOC107696541 coding downstream 25497 13168463 ~ 13209156 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 67181 13210147 ~ 13227655 (+)
LOC122324206 pdcd6ip,LOC107669307,LOC107593555,LOC107706184,LOC107742851,LOC107591619,LOC107696546 coding downstream 85849 13228815 ~ 13240727 (+)
arpp21 arpp21,LOC107593556,LOC107706187,LOC107669332,LOC107742849,LOC107696582 coding downstream 102332 13245298 ~ 13255979 (+)
G132549 NA non-coding upstream 12644 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 15295 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 36336 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 273666 12786644 ~ 12865595 (+)
LOC122323456 NA non-coding upstream 304736 12831641 ~ 12834525 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 368642 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 370056 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 412045 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 418201 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 703816 13846782 ~ 13848115 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 113235 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 714183 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1026364 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1615380 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 2721165 10415640 ~ 10418096 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 166461 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1644578 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1691635 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1935488 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 2165761 15308727 ~ 15313877 (+)

Expression


Co-expression Network