cacng6a (cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581)


Basic Information

Item Value
gene id cacng6a
gene name cacng6a,LOC107693285,LOC107589389,LOC107724075,LOC107739513,LOC107599526,LOC107656581
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17484946 ~ 17492735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218352.1
CAGAAACCCCCAACACGTATTCGACACTCGACAGGTCAGCTGCTTGTTTGTGTTCTTGTGATTCACTGTACCTGCTTTGTCAGCACCGTTAAGattaacCAACATGACCAAACCCTGACTCCATCATCTCATCTTCAAGCTGTTTTATCATTCAGCACTCTTTGTATGAATGGACCATGCCTTTCCCTGTCCTACAGCTCCCATCATCCTTCAGCTGGCCTTAACGCCTCCATTATTAACATCCTCAACCGCATCTTCTTCTGCTGAAGCCTACATCAGAAACACATTAGACTAGCCCAGATTGATCGCAGTGGATCAATCTAACCCAGACTTCTCCAGCACTAACCTTCTTCGTTTGTCCTCCCATCTGATTATTTTGACCTCTCACATCTAAGAAGACTTAAATGTCCTTTCAAAACAAGCCTCTCATTCGTTTGTCTGGATCTCTGAAGCTGCAAATCAATCATGTGGTCCACGTTCATCGTGCAGGATGAAGAGGTAAGGACGGCAAACACATCAGCTTCCGGTGGCCTGGAAGGGTTTTTGGGATCACGGGGCGGTGGACGCAAGCGCCGACACAGAACGCACTCCAGTTCTGGAGATGGAATTAGCGAAAGCCAAGAGGGCAAAATCAAGCTGACGTTGTTCATGGCTGTAACCGGCATCATGCTTACTGTGCTCGGGGTGGGAACAGAGTTCTGGGTGGAGCTTAAACCACCCAAGAGCTTCTACAACAATCAGACTTGTCTGGTAGCACATTATGGCTTATGGAAATGCTGTACCAAGACATTCTGGGTGTCAGATATGGACCCAAAGCAGGAGACCTGTGGGCCTCTGCACTTACAGGGAGAATCCAATTGCACCTTCTTTAAGTTCTACACCACTGGAGAAAACATTGTCCTATTTCAGAAAACGCCAGAAAAGGATCTGACAGTAGCGTCGGCCATGTTTGCTATCATTAGTCTTTTCCTGATGGTGATGGGAGCTATCTGCATTATCATGGCAGTAAGCAAAGGTGTTCAGTTCTTCTTGAAGCCAGCCGCTGTCTGCTTCATACTGTCAGGTGTCTTAATCTTCCTCTGCCTCATAGTTTTCCACCAATCAGTGCTTTCTTTCCTAGCAAGTGACCAATCCATACCTCTACATCATGAAATGTCATGGTCAGTGACGTGTGTGGGCTGCGCCGGGGCTCTGGTCATTGTCGCCGGGGTCTTGTTCTTGATCCTTGCTCTTCCATACAGTCCTTGGGAAAAATGCTTacctaaaaaaaacagtgacatCTAGTGGCGTGGGGGCTGTAGCGCGCGTCTCATTCAGATTTGTACTAATAAAGTGGAACAGACAGCAACAGTACATGGTGAATctggatgtatatatatatatatatatatatatataaaagcaatgGTTGGCAATGCGATTATGTTGTGCATAAGTTGGCACTAGAGAGGATGCTGATGGAAACGTAACAGGAAGTGAGCCAGACATTTTGGCAGAGCGTATGTACCTTGAAAATGAAAGTGCctaaaacaataatacatatAAGCTCATAACTTTTACATAATATCACATTTTTGGGAAAACTTgtgcaatatttaattattggtTGAATTCtatcttttgttattttaatgtttttaaatgatatgaAACATATGGCCTAGGTAAACTTGATGCTGTATATTTTGTTTGACTTTATGTACAGTTTGAGACATTTAAAGGTTCTggtttatgttatatttaaccTTTTATGAAGATTGAGGTATAAATTGAGGTAAAATCATGTTACATTTTTGAGACAGAAGTCTAAATGCCATACTGTAGTTGTGCTGATATATATTGCGGTATAAATGTATGGCATGATTGGGCTTCCAAACACCGACAGcactgtaaaaactgttttaacttaaaattatgttttaccCCGCCGACCTACAATTTCTAGTTtggtcaactaaaatattccagttgtcacttaaattaacttaaaatttcaagttgactaCACTAGAAAGTTTAAATCAGCGAGGTAAATTATTTTACGTTGAAACAACGTaaccatttttacagtgtgttatTAAAGTTGTAGGTAACAGAAATGAAGcttatttgtgcttttatgtTTATGTCTATGCAGACATTTTCAAGCTTCGATTTGGTCTTGACACTAAAATACATCCAAAAAAACCACAAATCTTTTCTTCTTCGTGATGTGGAAAACAGCCTTCACGTCTCGTCAGTGAGGCAAATAAGAAAACCACTTGAAATCCATAACAAAGCTGCTTGAGATACATGAGCGAATTTATTGTGTTCCCGGTGGACGCTGACCGTTTATTAACGGTGGCGCCTTAAACGCGAAGCAAACACGTGGAATTGCAtatctgaaaaacaacatgACCActcaatttattatatttatattcggAGAGAACTGTagcattgtaaataaataacaaataaagtaaTGGCTTTTCACAGGAACACAACTTTAAATGTGCTGGCTGATTTGCAAAATTATACATACTGAGAAATTGATATTTCGGAAAGAGACAGGCGATGGAAACATGtcatcgattttttttttttttttttttagaagaggGCAGTTTAGGCTTTCGAAAGGAACTTTAGCTACGCGATGGTGCGTCCAGTTCTAATGAAAATCTGGTTTTGGGTTTGATCTGTGGTTTTAGTCTGGCAGCTGACAGCACCAGTGAAAAGCCCACTTGATTCATCTCCGGTTCTGACCAGCCCTCTTCATCTGGAGGTGGTCGCTTGACGACAGCAAGAGACGAAGTGAAATcaaaagcattaattaaaagcCCCATcgtctgctgctgctgctcctgctGCTTCCCATTGTGAACGCTGACACTAATGCCGATCTAGAATCAGTTACTGAAAGTGTTAGAGGAAAGCAGATCATAATAATGAGAAACTTTCATTGTTGGCTGCCTCTGGTGCATGACAGAAATAGCTTTCCTACTGAGTTGGGCTAGGTTATGCAACAATCCGAACTAAGAAGTGCTGGTTTAAAAGTCAAACTTTGagcgtttcatttatttatttatttatgtttagcctcttaatgtgaatttttatttttaaaaagaatgtttGGATGAAAGTATTTTTGCAGGTGTGCAGTGACATCTGGCACCACAATGATGTACTCTGGGATTTTTCAACAGACAATTTgccttttagtgtttttttcctaTAGGCAAAACTGAAGTAATGCTTCCCATTTAAGCaatgttttctgtctttctggtagttctgttattattattattattatcagttttggTTTTGGTTCTGACTATTTTCAGGATTGAAATTTGACTAAATggaaattacacatttttatattcaaatatttgtgcattatattatattatattatattatattatattatattatattatattatattatatatcctCTCAGGTgtagtatttttagttttataattttgGAAGGTCTTACTGTGATttgaaaaaatcattaaaacaaagtGTGACAAAAATTGAATTCATAAATAAAGAGTGGTAAAGATCTGTGTATGCATTGGATCTTATTCTAAATCTTTTATTGTCCGACTGAATAGATATTGCGCATTTTTGTATTCAAATAGTTTCTGGGTGAattgtaagtacattttgtgcatattatattacattataatatattatattatattaaatggatggatttatataatataatataatataatataatataacataatataatataatataatataatccaTTCTCTgctatcatattatattatattttcaggtgtagttttttagctttataattttttttgacttTAAAGATCTTACTGTGCACATGACACATCAAATATCAAAGTGTGATATCAATGCCTTGTTTATAAAAAAGAGTGGTGCAAATATGTGTATGCTTTGATTCTTATACTAACTCTTCCTTTGTCTACTGTCCATCTCTCCTGCATCGGAGCACTTGTACATATGCAGTCTACACATGCACTTCAGTATTTGTCAGATATGTGAAATGACATCCATGCCGAAGCCAAGATTCTATTGCCTATTTCCATCCATTCGTTTCGGATGTTTGGCATGCTCTCTTGATATGCATTACTGTTTGTGCCAGTCATCGAGCGAACGCGGTTCCTCTCCTGACTTGGATTCATGCAAATTTAtcataaagaacaaaaacatcaa
>XM_043218353.1
CTGTGCCATATCCACGTCCTCCTCCTCTTTAAACCCCTCTCTTACGTACTTTCTCTCCGTCTTGCAGAAACCCCCAACACGTATTCGACACTCGACAGattaacCAACATGACCAAACCCTGACTCCATCATCTCATCTTCAAGCTGTTTTATCATTCAGCACTCTTTGTATGAATGGACCATGCCTTTCCCTGTCCTACAGCTCCCATCATCCTTCAGCTGGCCTTAACGCCTCCATTATTAACATCCTCAACCGCATCTTCTTCTGCTGAAGCCTACATCAGAAACACATTAGACTAGCCCAGATTGATCGCAGTGGATCAATCTAACCCAGACTTCTCCAGCACTAACCTTCTTCGTTTGTCCTCCCATCTGATTATTTTGACCTCTCACATCTAAGAAGACTTAAATGTCCTTTCAAAACAAGCCTCTCATTCGTTTGTCTGGATCTCTGAAGCTGCAAATCAATCATGTGGTCCACGTTCATCGTGCAGGATGAAGAGGTAAGGACGGCAAACACATCAGCTTCCGGTGGCCTGGAAGGGTTTTTGGGATCACGGGGCGGTGGACGCAAGCGCCGACACAGAACGCACTCCAGTTCTGGAGATGGAATTAGCGAAAGCCAAGAGGGCAAAATCAAGCTGACGTTGTTCATGGCTGTAACCGGCATCATGCTTACTGTGCTCGGGGTGGGAACAGAGTTCTGGGTGGAGCTTAAACCACCCAAGAGCTTCTACAACAATCAGACTTGTCTGGTAGCACATTATGGCTTATGGAAATGCTGTACCAAGACATTCTGGGTGTCAGATATGGACCCAAAGCAGGAGACCTGTGGGCCTCTGCACTTACAGGGAGAATCCAATTGCACCTTCTTTAAGTTCTACACCACTGGAGAAAACATTGTCCTATTTCAGAAAACGCCAGAAAAGGATCTGACAGTAGCGTCGGCCATGTTTGCTATCATTAGTCTTTTCCTGATGGTGATGGGAGCTATCTGCATTATCATGGCAGTAAGCAAAGGTGTTCAGTTCTTCTTGAAGCCAGCCGCTGTCTGCTTCATACTGTCAGGTGTCTTAATCTTCCTCTGCCTCATAGTTTTCCACCAATCAGTGCTTTCTTTCCTAGCAAGTGACCAATCCATACCTCTACATCATGAAATGTCATGGTCAGTGACGTGTGTGGGCTGCGCCGGGGCTCTGGTCATTGTCGCCGGGGTCTTGTTCTTGATCCTTGCTCTTCCATACAGTCCTTGGGAAAAATGCTTacctaaaaaaaacagtgacatCTAGTGGCGTGGGGGCTGTAGCGCGCGTCTCATTCAGATTTGTACTAATAAAGTGGAACAGACAGCAACAGTACATGGTGAATctggatgtatatatatatatatatatatatatataaaagcaatgGTTGGCAATGCGATTATGTTGTGCATAAGTTGGCACTAGAGAGGATGCTGATGGAAACGTAACAGGAAGTGAGCCAGACATTTTGGCAGAGCGTATGTACCTTGAAAATGAAAGTGCctaaaacaataatacatatAAGCTCATAACTTTTACATAATATCACATTTTTGGGAAAACTTgtgcaatatttaattattggtTGAATTCtatcttttgttattttaatgtttttaaatgatatgaAACATATGGCCTAGGTAAACTTGATGCTGTATATTTTGTTTGACTTTATGTACAGTTTGAGACATTTAAAGGTTCTggtttatgttatatttaaccTTTTATGAAGATTGAGGTATAAATTGAGGTAAAATCATGTTACATTTTTGAGACAGAAGTCTAAATGCCATACTGTAGTTGTGCTGATATATATTGCGGTATAAATGTATGGCATGATTGGGCTTCCAAACACCGACAGcactgtaaaaactgttttaacttaaaattatgttttaccCCGCCGACCTACAATTTCTAGTTtggtcaactaaaatattccagttgtcacttaaattaacttaaaatttcaagttgactaCACTAGAAAGTTTAAATCAGCGAGGTAAATTATTTTACGTTGAAACAACGTaaccatttttacagtgtgttatTAAAGTTGTAGGTAACAGAAATGAAGcttatttgtgcttttatgtTTATGTCTATGCAGACATTTTCAAGCTTCGATTTGGTCTTGACACTAAAATACATCCAAAAAAACCACAAATCTTTTCTTCTTCGTGATGTGGAAAACAGCCTTCACGTCTCGTCAGTGAGGCAAATAAGAAAACCACTTGAAATCCATAACAAAGCTGCTTGAGATACATGAGCGAATTTATTGTGTTCCCGGTGGACGCTGACCGTTTATTAACGGTGGCGCCTTAAACGCGAAGCAAACACGTGGAATTGCAtatctgaaaaacaacatgACCActcaatttattatatttatattcggAGAGAACTGTagcattgtaaataaataacaaataaagtaaTGGCTTTTCACAGGAACACAACTTTAAATGTGCTGGCTGATTTGCAAAATTATACATACTGAGAAATTGATATTTCGGAAAGAGACAGGCGATGGAAACATGtcatcgattttttttttttttttttttagaagaggGCAGTTTAGGCTTTCGAAAGGAACTTTAGCTACGCGATGGTGCGTCCAGTTCTAATGAAAATCTGGTTTTGGGTTTGATCTGTGGTTTTAGTCTGGCAGCTGACAGCACCAGTGAAAAGCCCACTTGATTCATCTCCGGTTCTGACCAGCCCTCTTCATCTGGAGGTGGTCGCTTGACGACAGCAAGAGACGAAGTGAAATcaaaagcattaattaaaagcCCCATcgtctgctgctgctgctcctgctGCTTCCCATTGTGAACGCTGACACTAATGCCGATCTAGAATCAGTTACTGAAAGTGTTAGAGGAAAGCAGATCATAATAATGAGAAACTTTCATTGTTGGCTGCCTCTGGTGCATGACAGAAATAGCTTTCCTACTGAGTTGGGCTAGGTTATGCAACAATCCGAACTAAGAAGTGCTGGTTTAAAAGTCAAACTTTGagcgtttcatttatttatttatttatgtttagcctcttaatgtgaatttttatttttaaaaagaatgtttGGATGAAAGTATTTTTGCAGGTGTGCAGTGACATCTGGCACCACAATGATGTACTCTGGGATTTTTCAACAGACAATTTgccttttagtgtttttttcctaTAGGCAAAACTGAAGTAATGCTTCCCATTTAAGCaatgttttctgtctttctggtagttctgttattattattattattatcagttttggTTTTGGTTCTGACTATTTTCAGGATTGAAATTTGACTAAATggaaattacacatttttatattcaaatatttgtgcattatattatattatattatattatattatattatattatattatattatattatatatcctCTCAGGTgtagtatttttagttttataattttgGAAGGTCTTACTGTGATttgaaaaaatcattaaaacaaagtGTGACAAAAATTGAATTCATAAATAAAGAGTGGTAAAGATCTGTGTATGCATTGGATCTTATTCTAAATCTTTTATTGTCCGACTGAATAGATATTGCGCATTTTTGTATTCAAATAGTTTCTGGGTGAattgtaagtacattttgtgcatattatattacattataatatattatattatattaaatggatggatttatataatataatataatataatataatataacataatataatataatataatataatccaTTCTCTgctatcatattatattatattttcaggtgtagttttttagctttataattttttttgacttTAAAGATCTTACTGTGCACATGACACATCAAATATCAAAGTGTGATATCAATGCCTTGTTTATAAAAAAGAGTGGTGCAAATATGTGTATGCTTTGATTCTTATACTAACTCTTCCTTTGTCTACTGTCCATCTCTCCTGCATCGGAGCACTTGTACATATGCAGTCTACACATGCACTTCAGTATTTGTCAGATATGTGAAATGACATCCATGCCGAAGCCAAGATTCTATTGCCTATTTCCATCCATTCGTTTCGGATGTTTGGCATGCTCTCTTGATATGCATTACTGTTTGTGCCAGTCATCGAGCGAACGCGGTTCCTCTCCTGACTTGGATTCATGCAAATTTAtcataaagaacaaaaacatcaa

Function

symbol description
cacng6a Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in aspirin-induced respiratory disease. Orthologous to human CACNG6 (calcium voltage-gated channel auxiliary subunit gamma 6).

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-6 subunit-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218352.1 False 4219 mRNA 0.37 5 17484946 17492671
XM_043218353.1 True 4224 mRNA 0.37 5 17484946 17492735

Neighbor

gene id symbol gene type direction distance location
rcvrn3 rcvrn3,LOC107724101,LOC107589377,LOC107656611,LOC107599570 coding downstream 204078 17274717 ~ 17280868 (-)
necap1 necap1,LOC107599542,LOC107656614,LOC107739526,LOC107589372,LOC107724115,LOC107693381 coding downstream 225813 17255045 ~ 17259133 (-)
LOC122323367 si:ch211-171h4.6,LOC107724079,LOC107656587,LOC107739584,LOC107693286,LOC107599572 coding downstream 257453 17223716 ~ 17227493 (-)
LOC122323323 LOC107656565,LOC107739585,LOC107656564,LOC107739586,LOC107589464,LOC107599573,LOC107589461 coding downstream 272142 17211462 ~ 17212804 (-)
LOC122324047 LOC107739586,LOC107656565 coding downstream 278666 17204877 ~ 17206280 (-)
styk1a si:dkey-14o18.6,LOC107693362,LOC107739618,LOC107599525,LOC107724061,LOC107589393 coding upstream 33677 17526412 ~ 17534108 (-)
fam131ba fam131ba,LOC107665489,LOC107724098,LOC107693361 coding upstream 61817 17554552 ~ 17577989 (-)
si:ch211-288g17.3 LOC107589397,LOC107693356,LOC107724088,LOC107599520,LOC107665487,LOC107739507 coding upstream 115218 17607953 ~ 17612267 (-)
si:ch211-288g17.4 LOC107693284,LOC107724121,LOC107589401 coding upstream 157147 17649882 ~ 17656526 (-)
si:rp71-15k1.1 NA coding upstream 165324 17658059 ~ 17662089 (-)
G133970 znf865,LOC107724093,LOC107589382,LOC107656606,LOC107599536,LOC108439897 non-coding downstream 139730 17325331 ~ 17345216 (-)
G133951 ccdc106b,LOC107656610,LOC108273335,LOC103027983 non-coding downstream 195566 17287667 ~ 17289380 (-)
G133917 LOC107693378,LOC107724100,LOC107589374 non-coding downstream 216898 17265664 ~ 17268048 (-)
G133920 NA non-coding downstream 223447 17260710 ~ 17261499 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding downstream 233642 17248684 ~ 17251304 (-)
G134245 LOC107599519,LOC107739505,LOC107665494,LOC107724097,LOC107693358 non-coding upstream 97261 17589996 ~ 17594324 (-)
G134247 NA non-coding upstream 105329 17598064 ~ 17670694 (-)
G134252 NA non-coding upstream 127439 17620174 ~ 17645633 (-)
G134272 NA non-coding upstream 296292 17789027 ~ 17789326 (-)
G134273 mrps21,LOC107739612,LOC107656470,LOC107724074,LOC107599587,LOC107589503 non-coding upstream 296816 17789551 ~ 17798825 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other downstream 150712 17330697 ~ 17334234 (-)
G133949 NA other downstream 200202 17283332 ~ 17284744 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other downstream 266156 17213961 ~ 17218790 (-)
trnap-ugg_15 NA other downstream 584170 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 586345 16897995 ~ 16898601 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 120711 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 436954 17929689 ~ 17935436 (-)
G134318 NA other upstream 518147 18010882 ~ 18011399 (-)
si:dkey-266f7.5 NA other upstream 676788 18169523 ~ 18188029 (-)
cks1b cks1b,LOC107753514,LOC107589507,LOC107599584,LOC108433716,LOC103394526 other upstream 732874 18225609 ~ 18241613 (-)

Expression


Co-expression Network