LOC122324139 (LOC107598234,LOC107672810)


Basic Information

Item Value
gene id LOC122324139
gene name LOC107598234,LOC107672810
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5583505 ~ 5585655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218363.1
GACCTGCAGAATACCATAGACGAGTTTCAGTCCAATATGGTATGCAATGTGAGCCGCCTTCGAGAGAACTTCAGAAAAATGCAGGAGGTTGCATCTAAAAAAGTTCTGACCATGAAGCCGAAAGGTAAACCAGGAAAAGAGCTGGATCCCAAATTAGTTAAAAGCATCCAGTCTCTGCCGCCCTGTCCCACGGTAGCAGAATTGAAAGCGAATTCAACCACAGCATCAGTGTATTCATCAGACCTGATCAGCGTGTTGAATAGCATCACCAAAACAGCCTCCTGCAGCCCAGCCATGAGCAAGGCGCTGAAACTATCAGCAGCGACCATTGAAAACCTCAACAAGGCTTTTCAAGATCACTGCTCAGAAATTAAGACCCTCAAGACACCTCAGAAAAAGAGCGACGTGGCTCAAGATGTGAACAGACGCGTCTCTGTTCCTTCTGTATATCAAAATGGATCTAAAGTCCAGCATCATATGGTGAAAAAATTGTCTGCCTTTCCTGTGAAACCCAAGGCAGATGATTTTGCTTTCCCTCAGGTCAAAGAACCTGTACGAGAGACAAATATTGAAGACACAGCTCCAAAAGCTCTCCTTGATGGAGCATTTCTTCCTGCCCCTGCCAGAACTTTTGCTCTCCGCAAGATCACAGGATCTGTCAAGGAGACGAAAGTTACCAGAGAAGAAATGGCAAACTTCACGTCACTTGAAGAGGCAATGGAGAGAACAGAAAGCTCACTTAAAGAGACGGTGGCTCACAAAGATCTCCGGAGTCCATCTCCTCACATCATCCATCGTCCATCCCTCGTCAGATCTCTTGCTCTTCCTCAGGTTTCACGACCTGTAGAGATGGCAAAAGTTTATGCCATGCCGGTGGAAGAACGCCAGAGTCTGTCTCCTGTCCACACCCGTCCTTCCTCATCTGTGAATCTGCCCCGAATTCAGACTCAAGTCAAGCCATCACTTCAGAAGTCCGGCAAGCCCGAGACTCGCAGATATGCTTCTGCAGTCTCGGGCAGCATTGAGGAGCTGTACATGGAGAAAAACGAGGAGGACGTTGACAAACCGCTTCACGCAAGCACGAAACGCCCATCATTCGTGATTGACATCAAAGCTCAAGAAAACAACCTCCAGCAGCTGGATCAAgcttttcaaaataacagcatttcctCTGAAATGTACAACCTGTGCAGAGGAACCGTCAATCAGACACTTAAGAGCGTTGAGCTGCGTCTTGGATGTCTTTTACGGAGATACATCCAGCATGTGCAAATGAAGCAATTAAGGTAAGAAAACCATCCTTTGTCTAACAGTTTGTTTGATTACAGGCTCATCAAATCCATTTACAACGTGCCATAACGAACATTTTTGCTCTGTTATACAGAAAGACGCTCGACGGAAATTTCAGGACGACCAGAAATTTAAGGGATGGACTGGAGTTCAGAAAAGTTCATTCTCAGCTCTGCAAATTTGACCATTTCCAACGGAGTGTGAACAATATCTGGGACGCCAAGCAAGCCTCTGCTGACGAGACACGCAGACTGTGCATCACACGGGCggtcgatttgtacaaacagGTCAGTACCAATTAGACAAAATGGCCTGTAACACTAATTTGTCGTGTTCTGATCGTGTAAACAGCATTACTAATGTGACCGATGCAAATAGTaatatcattttctttaaaaaggtgaATGCAGCACATGGACTACATCTGACAGGCATATCGCATGCGCAAAGGCACGTATCCCTGCCTCTGCTAACCGTGACGCCCATGCGGTTCAGCTCCAACCTGTGTCCGTCTCCTCCTCGGGAACCGCAAACTGCACCCGGCAGAGCCAGTCCAGCGCGTCATCGTCAAATCCACCTGAAAGCTCTGCTCCACACAAACACCACCAGGAACATAAGAGGGCAGAGTTCCCTGAAGATCAGTCACATTCAGTGATGATGGCCAGCGTCAGGAAGTAATATGTGGAATAACGACTTGTACATAGACTAATAACAGGACGAACTCTGACATGGACACAGCAGCCGAAAC
>XR_006247105.1
GACCTGCAGAATACCATAGACGAGTTTCAGTCCAATATGGTATGCAATGTGAGCCGCCTTCGAGAGAACTTCAGAAAAATGCAGGAGGTTGCATCTAAAAAAGTTCTGACCATGAAGCCGAAAGGTAAACCAGGAAAAGAGCTGGATCCCAAATTAGTTAAAAGCATCCAGTCTCTGCCGCCCTGTCCCACGGTAGCAGAATTGAAAGCGAATTCAACCACAGCATCAGTGTATTCATCAGACCTGATCAGCGTGTTGAATAGCATCACCAAAACAGCCTCCTGCAGCCCAGCCATGAGCAAGGCGCTGAAACTATCAGCAGCGACCATTGAAAACCTCAACAAGGCTTTTCAAGATCACTGCTCAGAAATTAAGACCCTCAAGACACCTCAGAAAAAGAGCGACGTGGCTCAAGATGTGAACAGACGCGTCTCTGTTCCTTCTGTATATCAAAATGGATCTAAAGTCCAGCATCATATGGTGAAAAAATTGTCTGCCTTTCCTGTGAAACCCAAGGCAGATGATTTTGCTTTCCCTCAGGTCAAAGAACCTGTACGAGAGACAAATATTGAAGACACAGCTCCAAAAGCTCTCCTTGATGGAGCATTTCTTCCTGCCCCTGCCAGAACTTTTGCTCTCCGCAAGATCACAGGATCTGTCAAGGAGACGAAAGTTACCAGAGAAGAAATGGCAAACTTCACGTCACTTGAAGAGGCAATGGAGAGAACAGAAAGCTCACTTAAAGAGACGGTGGCTCACAAAGATCTCCGGAGTCCATCTCCTCACATCATCCATCGTCCATCCCTCGTCAGATCTCTTGCTCTTCCTCAGGTTTCACGACCTGTAGAGATGGCAAAAGTTTATGCCATGCCGGTGGAAGAACGCCAGAGTCTGTCTCCTGTCCACACCCGTCCTTCCTCATCTGTGAATCTGCCCCGAATTCAGACTCAAGTCAAGCCATCACTTCAGAAGTCCGGCAAGCCCGAGACTCGCAGATATGCTTCTGCAGTCTCGGGCAGCATTGAGGAGCTGTACATGGAGAAAAACGAGGAGGACGTTGACAAACCGCTTCACGCAAGCACGAAACGCCCATCATTCGTGATTGACATCAAAGCTCAAGAAAACAACCTCCAGCAGCTGGATCAAgcttttcaaaataacagcatttcctCTGAAATGTACAACCTGTGCAGAGGAACCGTCAATCAGACACTTAAGAGCGTTGAGCTGCGTCTTGGATGTCTTTTACGGAGATACATCCAGCATGTGCAAATGAAGCAATTAAGGTAAGAAAACCATCCTTTGTCTAACAGTTTGTTTGATTACAGGCTCATCAAATCCATTTACAACGTGCCATAACGAACATTTTTGCTCTGTTATACAGAAAGACGCTCGACGGAAATTTCAGGACGACCAGAAATTTAAGGGATGGACTGGAGTTCAGAAAAGTTCATTCTCAGCTCTGCAAATTTGACCATTTCCAACGGAGTGTGAACAATATCTGGGACGCCAAGCAAGCCTCTGCTGACGAGACACGCAGACTGTGCATCACACGGGCggtcgatttgtacaaacaggtgaATGCAGCACATGGACTACATCTGACAGGCATATCGCATGCGCAAAGGCACGTATCCCTGCCTCTGCTAACCGTGACGCCCATGCGGTTCAGCTCCAACCTGTGTCCGTCTCCTCCTCGGGAACCGCAAACTGCACCCGGCAGAGCCAGTCCAGCGCGTCATCGTCAAATCCACCTGAAAGCTCTGCTCCACACAAACACCACCAGGAACATAAGAGGGCAGAGTTCCCTGAAGATCAGTCACATTCAGTGATGATGGCCAGCGTCAGGAAGTAATATGTGGAATAACGACTTGTACATAGACTAATAACAGGACGAACTCTGACATGGACACAGCAGCCGAAAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107598234

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218363.1 True 2038 mRNA 0.47 2 5583505 5585655
XR_006247105.1 False 1925 transcript 0.48 3 5583505 5585655

Neighbor

gene id symbol gene type direction distance location
LOC122323836 LOC107598234 coding upstream 12234 5569730 ~ 5571271 (+)
LOC122324215 NA coding upstream 50618 5531960 ~ 5532887 (+)
eya3 eya3,LOC107738590,LOC107731567,LOC107672865,LOC107702484 coding upstream 82909 5484922 ~ 5500596 (+)
si:ch211-195b13.1 si:ch211-195b13.1,LOC107738591,LOC107672866,LOC107702504,LOC107731568,LOC103036792,LOC108411161 coding upstream 99837 5471782 ~ 5483668 (+)
LOC122323295 NA coding upstream 158717 5407049 ~ 5424788 (+)
LOC122323266 NA coding downstream 27413 5613068 ~ 5614130 (+)
rpa3 rpa3,LOC107754810,LOC107598208,LOC107672835,LOC107731561,LOC107702426,LOC107568286 coding downstream 131041 5716696 ~ 5717681 (+)
col28a1a col28a1,LOC107754784 coding downstream 139713 5725368 ~ 5739185 (+)
LOC122323385 sdhaf3,LOC107702681 coding downstream 290395 5876050 ~ 5882974 (+)
jarid2b jarid2b,LOC107754814,LOC107694367,LOC107702394,LOC107731546 coding downstream 475894 6061549 ~ 6162543 (+)
G130833 NA non-coding upstream 34706 5548507 ~ 5548799 (+)
G130813 LOC107672812,LOC107598225,LOC107571454,LOC107738589,LOC107672867,LOC107731566,LOC107571461 non-coding upstream 78091 5503266 ~ 5505414 (+)
G130664 NA non-coding upstream 177939 5404453 ~ 5405566 (+)
G130676 NA non-coding upstream 197388 5382816 ~ 5386117 (+)
G130677 NA non-coding upstream 197957 5385136 ~ 5385548 (+)
LOC122324017 NA non-coding downstream 25333 5610988 ~ 5612338 (+)
G130855 NA non-coding downstream 28609 5614264 ~ 5632428 (+)
G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding downstream 73878 5659533 ~ 5670532 (+)
G130861 NA non-coding downstream 88640 5674295 ~ 5674844 (+)
G130890 LOC107731557,LOC107702657,LOC107568288 non-coding downstream 202911 5788566 ~ 5924971 (+)
G130640 txnipa,txnip,LOC108410889,LOC107672857,LOC107738596 other upstream 269327 5223700 ~ 5314178 (+)
LOC122324077 NA other upstream 355279 5225081 ~ 5228226 (+)
LOC122323259 s100v2,LOC107672873,LOC107598219,LOC107748347,LOC107676101,LOC107550199 other upstream 403828 5176270 ~ 5179677 (+)
G130637 NA other upstream 420106 5162586 ~ 5163399 (+)
G130613 LOC107745035,LOC100705094,LOC102198470,LOC101485383,LOC107563920,LOC102785635 other upstream 600261 4977885 ~ 4983244 (+)
LOC122323254 sdhaf3,LOC107702681 other downstream 160146 5745801 ~ 5752917 (+)
LOC122323983 tac1,LOC107702667,LOC107731560,LOC107754813,LOC107672864 other downstream 199475 5785130 ~ 5922973 (+)
pdia8 zgc:100906,LOC107754821,LOC107584310,LOC107694359,LOC107711320,LOC107595587,LOC107754819,LOC107584312,LOC107694360,LOC107711304 other downstream 786180 6371835 ~ 6401298 (+)
G131047 LOC107584307,LOC107694350,LOC107711327,LOC107677453,LOC107595591 other downstream 877428 6463083 ~ 6488760 (+)
G131042 gabbr1b,LOC107595614,LOC107677456,LOC107584305 other downstream 934265 6519920 ~ 6526080 (+)

Expression


Co-expression Network