ncdn (ncdn,LOC107706243,LOC107654732,LOC107754263,LOC107688377,LOC107592947,LOC107585609)


Basic Information

Item Value
gene id ncdn
gene name ncdn,LOC107706243,LOC107654732,LOC107754263,LOC107688377,LOC107592947,LOC107585609
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14892389 ~ 14896444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218378.1
atagttCCCGATATTATTCGTAAAATCCTTTCGTTTACCGAAGACTATTATTTTGAAATCGACTGCTCTCATTATGTCTCGCGAGTTTTTCCGTTTCCACGTAGCGTTCAACGTGTGCGCGACAATCCTGCCTGACTCCTGGTTTGTTCGTTGCATAtgGTTGGCCTAGAAGATGGCAGAGAATGGGTGTCATCTCAACCCAGAAGAGGTCCTTACCCCACATCATCCACCTAGTACGGAGGCACATGCAGCAGGAGGGAGCAGTTCTGACCCCAGTGGCCTGTCTCCGTCACAGAAAGAAGTTCTGGAGCGCTGTCTACATGCTCTCACTCATGCCAAGAACGACAGTCACATTTTAGCAGCACTTCTCCTGATCACAAGGTTGTGTCCAGCCGGACAACTGGATACCGGGACTCTGCATCGGATTTTTGAAGCAGTAGGTTTTAATCTTCCTGCACGCCTTCTGGTTACAGCGTTTCGGGGTGACGACAGCTCCGGGTTGCCCCCGGAGGAGTTGATATCCCTGGGCACTGCTCTGTTGGCTGCTCTCAGCACGGATGCAAGCATGGTTGCTCATCCACAACTTCTCAGCACAGTCCCTCTGATCCTGAGCATACTGGAGAACGGCCCCAATGGGACAGATAAACCGACAAAAACACTCGGGAATGAATCCCAAAGCGCCTCTGGATCTCAAACCGGAAGCGCTGCAGATTCTCAGCCCGCTTCAACAAGCACTTCTACCTTGGATGAGGCTTTGGCCTGTGACTGCTATCAGGTTCTAGATGCTGTACGTGCTTTACCGCAAGGCCCCGAGCAGCTCCTCACCCGCGGTGCCGTTCTGGCTCTATGTAGAGCCGTGCTCAAAAAGCAAACTCTCAGCCATGACAAAGGACTTCCGCTGTTGGGACACGTGTTGTCGTCCAGCGTGAGACAACGGGCTTGGGCTAAACACTCGTCCGATCTTCTCTTGCTGTTGCAAAACGTTTCGCAAAACTTCTGCCGAGTTTCACATCAGGACAGGTTAGAGATGTGCTCTCAAATACCGCCATTTCTTCCCCCACCCGGGGTCGAGTCGGAAAGCCAGGTGCTTAAGGAGATCGTGGGCAATCTGTGGGCTTCACTGCGGCCCTTGATTCAGGGCAAGCTCACTCAAGAGCATTTAGGCTCGGTTTTGGTGGTATCTGCCTGCCTTCTGGACCTGTGTGGGTGGGAGTCGACGGGACCTCCTAAATTCTGCTGCTTGCTGGTGAACCGGGCGTGCGTGGAGGTGAGGATGGGCCTCGAAGAGCCGCCGGGTACAGAAATCTCCCCTCAGCTGCAGCACACACTCACTGCCTGCTATCGCATCATGGAGGCGGCTATGGAACAGGCCTGTAGCCAGGGGCCGGCTTCAAACCCTGCTCAGATACAGGCGGCTATCACTGGCCTGAGTCTTCAGCAAAGCAGACAGGTCCTGGGAGCTCTGGAGGAGGCGTTCTCGGCTGAAATTTACTTTCTTAAGCAGGCGGAGCAGACCAGCTATGATGACCCATTTCTGTTCGCCACGTTCCGCTCCCTCTGTGCATGGTTTGCTGAAGAAACCTCATGTTTAAAGGAGGAAGTCATTGACCTCTTGCCTTTTCTCATTGGCTACGCTAAAAGTCACTTTAAGGGAGGTGGAAAAGGAAAGGGACTTGCTGATTGGATGTCAAAGATGTCCATCAGCAGCAGTTCACAAGATGAGACCTGGAGCAGAGAAGCTCCTCTTagATATCTTCTCCCATCTCTGTGCCACCTCTCTGCTGAAGATGGGCCGAGGCGGGTTCTTCTCTCTCTGGACGCTCCAGCCTTGCTTGTGGATTTCCTGAGTAAAGGTTGGGCGTCCTTGAGAGGTCAAAGCGGGAAAACGGTGGCCCGGGACCCCGGTGTGGAAACGGCATGTTCTGCTTTACTaaactttgccatcacagagCCAGAACGAGTCAGGAGCGACCCTTGTTTCGTTGCTCTGGAGAGCATGCTGAGCGACGCACTGCCTGTTCTTCTCCATAAGCCACGCCTCTTGGTCTTAGCAGCAAACTGCTGCACGTTGGGTCTCATGATTGCCAGGCTGAAGTCAACTTCCGCAGACCCCGTAGAGCTAGGTCCGCGGCGTTTCTTCTCTTCAGTTTTGTCTTTTCTTCTGAGCGCTGTGCAGTCCGGACCGGCTTCTAAGCCAGCACGGATCAGCACTCTCTGGGAGGAACACTGGGAGGAGGCCGGAGAGCTTTGGAGGCTCAGTTTGCAGGCTTTGGGCGGTTGCGTTCGAGCTCAGCCCTGGATCACCACCCTGATCAGAGATGAGGGATGGCTGCAGAACATCTTCACTCTGCTGGGACCCAGTGGACGTCTCCCAGACCAACCTTCGCAGGATGCTCTCGAGGAAGTCCTGTGTGCCGTGGCCAAGCAGTGCCCGGCGTGTCGCAAGGACATTCGTGAGCTGGTCAGGAGTGTAAGCTGTGGGTCACTTCAAGGGTTGCCACAGCTTGGCAGAATATTGGTGGAGAAGAATctgtaaaatacatattaaataagcACTTAATATGTTGTCTGTTTagcatattaaatatgcaatggATTTGGAATACACTCTGGCCGAAGTATAAACGAGGATGtcgaataaaaatatttctgcttttgtca

Function

symbol description
ncdn Predicted to be involved in neuron projection development and regulation of neuronal synaptic plasticity. Predicted to be located in postsynapse. Predicted to be active in dendrite. Orthologous to human NCDN (neurochondrin).

NR:

description
neurochondrin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218378.1 True 2661 mRNA 0.53 7 14892389 14896444

Neighbor

gene id symbol gene type direction distance location
ext1c ext1c,ext1,LOC107706241,LOC107654729,LOC107592945,LOC107688378,LOC107754264 coding upstream 5625 14838627 ~ 14886764 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 coding upstream 396916 14473289 ~ 14495473 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC107754284,LOC107654669,LOC107696534,LOC107592974,LOC108256818 coding upstream 419988 14457646 ~ 14472401 (+)
grinaa grina,grinaa,LOC107706230,LOC107654720,LOC107592938,LOC107754271 coding upstream 437568 14443467 ~ 14454821 (+)
mapk15 mapk15,LOC107706228,LOC107654719,LOC107696521 coding upstream 449648 14435323 ~ 14442741 (+)
tfap2e tfap2e,LOC107654734,LOC107688421,LOC107706245,LOC107754262 coding downstream 1105 14897549 ~ 14906707 (+)
ago4 LOC106511154,LOC107591980 coding downstream 38715 14935159 ~ 14951672 (+)
cldn35 LOC107591984,LOC107654683,LOC107592950,LOC107754258,LOC108430542 coding downstream 56933 14953377 ~ 14956945 (+)
cdca8 cdca8,LOC107591982,LOC107592949,LOC107654740,LOC107754257,LOC107688370 coding downstream 62163 14958607 ~ 14961570 (+)
LOC122323313 ext1c,LOC107706241,LOC107654729,LOC107592050,LOC107754264,LOC107592945,LOC107688378 coding downstream 314723 15211167 ~ 15226683 (+)
G133068 NA non-coding upstream 134413 14757624 ~ 14757976 (+)
G132916 NA non-coding upstream 309973 14175839 ~ 14582416 (+)
G132913 trps1,LOC107706219,LOC107592043,LOC107754280,LOC107696539,LOC107562946 non-coding upstream 723905 14168095 ~ 14168484 (+)
G132910 NA non-coding upstream 786128 14097276 ~ 14106261 (+)
G132884 NA non-coding upstream 1044274 13846782 ~ 13848115 (+)
LOC122324050 NA non-coding downstream 125831 15022275 ~ 15035422 (+)
G133109 ppce,LOC107602379,LOC107688393,LOC107706142,LOC107592053,LOC107654745,LOC107710331 non-coding downstream 299613 15196057 ~ 15281004 (+)
G133129 NA non-coding downstream 478056 15374500 ~ 15378019 (+)
G133253 NA non-coding downstream 563894 15460338 ~ 15460706 (+)
G133256 NA non-coding downstream 585554 15481998 ~ 15483517 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other upstream 54420 14834601 ~ 14837969 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other upstream 1555640 13309427 ~ 13336749 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 1866363 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 2467311 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 2779492 12111279 ~ 12112897 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 182010 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 412283 15308727 ~ 15313877 (+)
anxa14 LOC107706258,LOC107654687,LOC107710308,LOC107592054,LOC107688418 other downstream 459164 15355608 ~ 15361845 (+)
cckb cck,LOC107592091,LOC107654691,LOC107706167,LOC107688363 other downstream 524691 15421135 ~ 15424497 (+)
G133266 LOC107748647,LOC107591995 other downstream 673220 15569664 ~ 15577981 (+)

Expression


Co-expression Network