gja4 (LOC107563282,LOC107664709,LOC107712627,LOC107698984,LOC107555947,LOC107726142)


Basic Information

Item Value
gene id gja4
gene name LOC107563282,LOC107664709,LOC107712627,LOC107698984,LOC107555947,LOC107726142
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1254323 ~ 1258824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218440.1
GGGAAAGTTTCCTTTCCCTCACTTGTTTCTTTTTCCGATTAAACGACTGGGCTTCGACCACAAGGGCTTATAAAACTCTCAGCGGCAGAATCTCCTCATACAGATAATAGAAGATAAACATAAAACAGGGTTGACAGAGGATGTCCAGAGCTGACTGGGGTTTTCTGGAGCACCTGCTAGAGGAAGGTCAGGAGTACTCGACTGGCGTGGGGCGCGTGTGGCTAACCGTGCTCTTCCTCTTCCGCATGCTTGTGCTTGGCACGGCGGTCGAATCTGCATGGGACGACGAACAGTCTGACTTCGTCTGTAACACCAAACAGCCTGGCTGTGAGTCCGTCTGCTATGACAAGGCCTTTCCCATCTCCCACTTCCGTTTCTTCATTCTGCAAGTCATCTTCGTCTCAACACCGACCATTTTCTACTTCGGCTTTGTGGCCCTGAGGACCAGAAATGAAAAGAGTCCGGAGGAGAAGCCGGAGGAGGAGGGCAGAAgacataaacagagaaaaaccaATGACTTTAAGATGGAGGTAATAAAGGAGGAAGACGAAGAGACCTTGGGAAAGGAAACAGAGAAGAAACTCAAAGCTCCAGGACCTCCAAAGCTCAAAGGGAAACTGCTGTGCGCTTATGCGACTAGCATAGTGCTAAAGGTTCTCATTGAAATTGGCTTCATTTTGGGTTTATGGATCCTTTATGGGTTTGTAATCGAGGCAAAGTATGAGTGCGAGAGGTTTCCCTGTCCTCACACGGTGGACTGTTTTGTCTCACGACCCACCGAAAAAACAATCTTCACCATATACACACAGGTCATCGCCGCGGTCTCTGTTCTCCTCAACATTGTGGAGCTTTTCCATCTGCTTCAGTTAGCAATAACACATAGACTAGAAAAGAGATATCAAACCGAGGAGGAGGTTAACAAATTTATTAGGGCGACTTCTTCTAGAGCAACACCAGCTAAAGCTCAAATGCCATCATTCGATGAAAGaaaccatctctttcttcctGTAGCACATGATGGTTATACTGCATCAGGGTTGGACTGGGACAAACGAGATCCTCCTTTAGAGGAGGACCTGCTTCCTAGCTACTCAAACTGCATGAGCAATGTGAAACCCGCCATACCCAAAAACAATCTTCATAAGAAACATCACAAGACTGAAGACAAAACGAGACATTACGTCTGAGGACCACTAAACGATGAACAAGGATTACATTTTAGAGAACTACATGTGTAAATGACCGATAGTGGTTTACTGTACAATCGAGAGCCATTTCCTTTGTTTAGATAGGCTGGGAAATAGGCCGTGCCTTGCAAAGAACCGTCTGTTGTGATCTGTGGCCAGATACGGGAGCCTCTCAAGTAGTGATTAGTTGAGAAGCTCAAGGTCAGGAAATACTCGAACCACTGAGCCAAAGAGAAATAAGCACAATGTCTGCCAGAGTGAGGGGTGGGTCTAGTACTGAACTGAATGATTGATATGGCATAGATAAGGTAGTTTATAATGTATAGCATTTGAGACCAAAATCAAAGTTAAACTGtacatacaatatttaaaatgtatttatgaatgattatataattaatatgctttaatatttattttcattaaacgaTTTCTAGTTTTTATCCATTTTTGAACTTCTGTAAATGATTAGGCTTTTGTTAGATGCATTCACATTACGCAACAAGTAATTTAAATgcctttgtttattttcatactaTCCTTAATTATTAAGATTATCAGTCAGCATTAAAtttaaagtgctcctattatggatttttgaaaacagcctttcactCCGTGTGTAACCCAGCTcagagtgaaagaaaacatcctgtgcagtttaaaatctgaaagtgcatcatgtataaagttattgttataaaatgagtcaaaatgaaacaGTAGCATTGCCCAAGCACCTGGTGGTCTTTTtgtgttaaaagaaatgaaaatgcatatttattcttGTGCTGCTTTTGTAGAGTTAGAAGCTCACTAAcacagctttaaatgaaattgaccaATCACCGGAGGAGTTTggaaaaattatgtttttcacCTTGAATGCATGTCAATGTTTGTTGGAGaatcccaaaaccaaaacaggAACCTTTCATTAGACATAgaaggggcactttaaaattttaaatctgaagtagctgccattttaaatgtttgcctTAGGTGGTTCAATGTAAGTTGTAATTCAAACATGTCATAAATGAACCTACATTTAGAATTCTGCGGGAATAAAAAAAGGTAGTAAGTAGGCAAGTTTATTGGAAAAATGTGCCTCCTGCTTGTTTTTCCAATAAAAGTGCCTCtagatttttgctaaatttcaaatatgtatatgtgtgtacgTACAACAACCAACGCAACCTACTAATAAAATGTTGCCAGATTCTA

Function

NR:

description
gap junction alpha-6 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218440.1 True 2417 mRNA 0.40 2 1254323 1258824

Neighbor

gene id symbol gene type direction distance location
ilf2 ilf2,LOC105924049,LOC107722161 coding upstream 138124 1112499 ~ 1116199 (+)
smap2 smap2,LOC107722153,LOC107670000,LOC107712765,LOC107698993 coding upstream 532009 706313 ~ 722314 (+)
col16a1 col16a1,LOC107669973,LOC107698978,LOC107712760,LOC107722150 coding upstream 568587 626876 ~ 685736 (+)
adgrb2 adgrb2,LOC107722142,LOC107669951 coding upstream 671920 349458 ~ 582403 (+)
psmb10 zgc:92791,LOC107565228,LOC107700647,LOC107719854,LOC107670694,LOC107563209 coding downstream 309134 1567958 ~ 1575123 (+)
LOC122323435 cenpa,LOC107670695,LOC107563210,LOC107717728,LOC107565247,LOC107700648,LOC108274877,LOC105890381 coding downstream 335170 1593994 ~ 1598320 (+)
LOC122324196 NA coding downstream 345568 1604392 ~ 1605197 (+)
LOC122323558 LOC107565238,LOC107700642,LOC107717719,LOC107563205,LOC107727042 coding downstream 347275 1606099 ~ 1611954 (+)
LOC122323560 NA coding downstream 353989 1612813 ~ 1620460 (+)
G129675 thsd7aa,LOC107670038,LOC107566934,LOC107555944,LOC107698991 non-coding upstream 291463 957018 ~ 962860 (+)
G129668 NA non-coding upstream 435832 818223 ~ 818491 (+)
LOC122323300 NA non-coding upstream 515565 723325 ~ 738758 (+)
G129701 NA non-coding downstream 7885 1266709 ~ 1267010 (+)
G129743 NA non-coding downstream 273742 1532566 ~ 1533005 (+)
G129795 NA non-coding downstream 441764 1700588 ~ 1704532 (+)
G129881 NA non-coding downstream 797581 2056405 ~ 2056882 (+)
G129886 NA non-coding downstream 823454 2082278 ~ 2082620 (+)
G129682 LOC107664710 other upstream 147750 1072151 ~ 1106573 (+)
LOC122323556 LOC107717722,LOC107700644,LOC107565248 other downstream 398434 1657258 ~ 1672784 (+)
thrb thrb,LOC107743925,LOC107719848,LOC107700654,LOC106588669 other downstream 611334 1870158 ~ 1965690 (+)
LOC122323678 NA other downstream 707916 1966740 ~ 1973384 (+)
ppp1r8a ppp1r8a,LOC107690919,LOC107732917,LOC107708698,LOC108441741,LOC108272406,LOC105903676 other downstream 875828 2134652 ~ 2141332 (+)
G129993 NA other downstream 1527101 2785925 ~ 2786348 (+)

Expression


Co-expression Network