rab42a (rab42a,LOC108414691,LOC103028730,LOC107732921,LOC107689573,LOC107708721,LOC107595911,LOC107556890,LOC107675932)


Basic Information

Item Value
gene id rab42a
gene name rab42a,LOC108414691,LOC103028730,LOC107732921,LOC107689573,LOC107708721,LOC107595911,LOC107556890,LOC107675932
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2322401 ~ 2327881 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218444.1
aacgTTACATAAACGCGCTAAACGAACGCCTGTGCATACACACGCCGTACAACGGGAAGAGCGTTACGTAACGCTTATTCTGCGAAACGGGTTTCGCTTCCTTCCCCCGCACATCTCCGACGAAAGTCATCGACTCCGTTCGCTGTAGTTACACGTTAGTTAGCAGAAGCGATCCGAGAAGGAGCGTCACATGACTGCAGCAGCGCGTCCGCCGCGCCCCCACCTTCTCCATCCTCCGCTCCGCTCCACACACGCTCAATGTAAACACCGCTTTGTCTCGGAGCCTGTGGCCGGAGCTCTGCACTCGCCATGCCATGGATATTTTATGGCAATACCAGTTCAGGATCATTTTACTGGGGGACTCGACGGTGGGCAAGTCATCTTTGCTCAAGAGGTTCACGGATGGCGTATACAGCGATGTAGCGGACCCCACGGTGGGGGTGGATTTCTACGCCCGTTCACTAGACATCGAGCCCGGCGTTAAAATCAAGCTGCAGCTATGGGACACAGCCGGACAGGAGAGGTTCAGGTCCATCACTACTTCCTACTATCGCAACTCTGTGGGCGGCCTCTTGGTCTTCGACCTGACGAACAGGAAGACCTTCGATCACGTGCGGGAATGGCACCGAGAGGTCAGCGAGCACATCCTCCCTCATCACATGGTCTACATCCTAATCGGCCACAAGAGCGACCTGGGCCGCGACCGCAAGGTGACTCGCGACGAGGCCGAGCAGCTGGCGGCCGAACTCGGCGTTCGTTACGTGGAGACCTCGGCCAAGTGCAACAGCAACGTGGAGCGTGCTTTCGAGCTGCTCACGCGGGACATCTACGAGCTGATGAAGATGGGCGAGATCTCCACGCGCGACGGCTGGGACGGGGTCAAGAGCGGCCTCACCGCTAAAGTCCTGTATCCTGCCGAGGAGGAGGCGGAGCGGGAAAAGAGCTGCAACTGCTGACTCCCGCAAGCCACCTGCAGTCACTCACCTGTGTATCAGTCGGTCTTCGCTTTCACCAACGTGTCGCATCGTGGTCACCGCCTCGGGCCTGGACCGCTGCACTTACCTTGTTGTCGCTGTCTGAGGTCGACGGTGCAAGCCTCTCGAAGGTGTAGTATATTTGGGCTTCAACGGACAGGCCCTGCTTCATATTATTGGAGATCACGTTCTGAAGTTTTCAGCAATCTTGCGGATTTTAGAGTCTCGTCGTACTCTACATCCTCTGGAGCTTTCTCCGTTCCCTTTAACCGTTATTACTATGATACAGTTAACATTTAGAGAGAACATATCGTAACTGCAATCTTATACACACTAATACTTCAAAGACCCCATAAAATAGCTTAACTACATGGTTTTCTCTTCTGTGTTGGCATCCCTTGTCGAAACATTAAGTCGGAGACAGACAAATGGCTTGCCCTCAAAAGAAATATACCCAATAGCCGTTGGTTTATGTCAGTGCCATGAGCCATGCTACCTATCGCTAGTCTCCTGGTATTAGGAGAAGGGCATTTGAGAGCATAATATTTTCCCAGtagcaaaatgtgtttttaatagtttttagcACTAAACATAGCACATAAATTGCATCAGTGTTCAAAATAGTCATGAAACGAAAGCcgcaaaaacctttttaaataagATGTAAAAGTGAAAACTGGCTGGTAGACATAATCGATAGGGTCAAAGGCAGGGGCCTTTCGCACAGAACGCATTTTTATCATTCCAGCGCGCTGcttttctgttgtgtttctgtgttaaaCACGTTCTAGATGGATCTAGAACGCGCTCGCTTCTTTTATAGTGTATCGTTAAAGACTCCTTGTCAGGATTTCAATTTTGACACACAGCGCAGTTCATCGACACCAGTTCCAAAACGGGGGACCAATCAGAAGACCCCGGAGGCGGAGCAAGCGATTTCTTATCAAAATCTATTCTTCTGTTTGGCTTTTTTCTTCTATttgcgttttttttctttttttaatatttttaaagtgtgctTTTAAAGTCCAAGATGCGTTCTGCGTGAATGTGTTAAAGGTGGTATTTACACAACGGTATCGAGTGATAATGGAAAaccttttatgcattttagcCATTGAATTTGGCCTTGAAACGCATCTGAAAAAGTTGAGATTTTGGAGACAATGCCATTGCTGTCTCCATTTAAACCAGGACTGCTGACTgccctgcaaagtttagctccagctCTAATCGAACACACCTGAAGCGACTAATTAAGGTCTAAGATcgcttgaaaatgaaaagcaggTGTATTCGATTAGGGTTGGAGGGTAAACTAAACCTTTAAATCATGAATGCAACCTATTGGTAAAAGCCACCTTGCCCATGGatgaaagacattttataatatctTTAAACATAGTATCCATTCTCTAAAGCAGTTCTGTGTAATCAAGCCTTTTAAAATCTAGTAATCCGTAGACCTTGACGACGTTCCTGACGCAAAGCCTGTTCCAAAAGATAGTCAGCAGCAACACTGCACCTCCATTGAAACGCCATATTTCGGCTGCAGCACATGTATATAACTACATCTTATTCAATACTGGAAAATATCAATTGAAAGAAATTGACTATTTTGCCCAGTATTAGCGGTGCTATGTATTGTCTGTGCTTATTAGAGTATCAGTGCATGCAAACAAGTCTATAACAAATTTTCACCTGCGCGTATACCATTGAAGTCGAATCGCTCATGAAGTTAGATTGATTCATATGTCACCGTACGCCTGAAGTGTCGACCGTTTCGATGTGAAAACCCTGGATTATTGCCACTTGAGCACTGGAGATTGTCCCTGTACGCATACTCTAGTGTACACTTAAAAGCCGAAGTATGCTTTGAGCTGACTATAGATTGGAACAGAGCTGTAGAGAAagacaaaacatgctttagcgagATTGATCACGCACCGGCTGGAAGTTCACACCGAGAACAATATCTATATCTACACACCAGAGACTTACAAGTGGGCATAGCCAAAGCTCACATTGCAGCTGCCCACAAGCACCACTAAACATCACGTTTCTTGGAGGCTGAACTCACTGACACCAGAATCCTGTCTCATGCACCGACCCTGACCACGTGCTGCTTCAGATTAAGGCAGAAGATATAAGAGATATAAGGGCACTCTTCGTCTCACCAGCACGTCAGTACCAGACTTCAGTCATGCTTGCTGTACAGAGGTTTCAGGCAGCATTGCTAACAGTCTTCCATCATGTGCCATCGGTGCGTTTGCACGTACATTTCTCTACGGctaaatgcactgtaaatagCAGCGGGGCACAGCGTACTCACATGTCAGGTGGAACCTAAAGGTTCGCGTGGCTTGCCTTGCGGGTCAGCATGCTCTAATTCAGAGCTAGTACGAAAATAGAGCATGAGAAAGCATTCGTGCCAGAGGAACATCGGAACTGTGCAAGTTCGGTTacgcatttttttcattttacagaccaagtgggaaaacctcccAAGTGATCTTCTGTAGTgcgtgaccatggaccacaaaaccagttaaCCAGAGTCCATCcataatctgaaagctgaactTTCcattgatttgttgtttttaaattgcaaaaaaaatcgaaatactagaaaatcgcctttaaagctg

Function

symbol description
rab42a Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction and autophagy. Predicted to be located in plasma membrane. Predicted to be active in Golgi membrane. Orthologous to human RAB42 (RAB42, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-39B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218444.1 True 3625 mRNA 0.47 2 2322401 2327881

Neighbor

gene id symbol gene type direction distance location
ctps1a ctps1a,ctps1,LOC107708718,LOC107689550,LOC108415321 coding upstream 4368 2311270 ~ 2318033 (+)
foxo6b si:ch211-206a7.2,LOC107689548,LOC107732925,LOC107708715,LOC107690913,LOC107595898 coding upstream 140674 2153835 ~ 2181727 (+)
pdik1l pdik1l,LOC107690927,LOC107732927 coding upstream 191875 2119968 ~ 2130526 (+)
lin28ab lin28a,LOC107690946,LOC107708696,LOC107595909,LOC107732914 coding upstream 206898 2102744 ~ 2115503 (+)
sf3a3 sf3a3 coding upstream 290216 2026415 ~ 2032185 (+)
LOC122324256 NA coding downstream 2260 2330141 ~ 2330276 (+)
gmeb1 gmeb1,LOC107556889,LOC107595901,LOC107708700 coding downstream 3852 2331733 ~ 2341123 (+)
ptprua ptprua,LOC107732911,LOC108272369 coding downstream 52740 2380621 ~ 2564556 (+)
hivep3a hivep3a,LOC107708727,LOC107687396,LOC107689544,LOC107732924,LOC107595896,LOC107569862,LOC107732908 coding downstream 566663 2894544 ~ 2914709 (+)
edn2 NA coding downstream 591487 2919368 ~ 2922019 (+)
G129916 NA non-coding upstream 56966 2265217 ~ 2265435 (+)
G129886 NA non-coding upstream 239781 2082278 ~ 2082620 (+)
G129881 NA non-coding upstream 265519 2056405 ~ 2056882 (+)
G129795 NA non-coding upstream 617869 1700588 ~ 1704532 (+)
G129743 NA non-coding upstream 789396 1532566 ~ 1533005 (+)
G129936 NA non-coding downstream 15154 2343035 ~ 2343239 (+)
G129942 NA non-coding downstream 23417 2351298 ~ 2351565 (+)
G129947 NA non-coding downstream 51202 2379083 ~ 2379355 (+)
G129974 NA non-coding downstream 400584 2728465 ~ 2734183 (+)
G129979 NA non-coding downstream 426143 2754024 ~ 2785827 (+)
ppp1r8a ppp1r8a,LOC107690919,LOC107732917,LOC107708698,LOC108441741,LOC108272406,LOC105903676 other upstream 181069 2134652 ~ 2141332 (+)
LOC122323678 NA other upstream 349017 1966740 ~ 1973384 (+)
thrb thrb,LOC107743925,LOC107719848,LOC107700654,LOC106588669 other upstream 356711 1870158 ~ 1965690 (+)
LOC122323556 LOC107717722,LOC107700644,LOC107565248 other upstream 649617 1657258 ~ 1672784 (+)
G129682 LOC107664710 other upstream 1215828 1072151 ~ 1106573 (+)
G129993 NA other downstream 458044 2785925 ~ 2786348 (+)
LOC122323290 NA other downstream 557532 2885413 ~ 2887628 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other downstream 561742 2889623 ~ 2893601 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other downstream 631712 2959593 ~ 2978416 (+)
G130077 NA other downstream 765186 3093067 ~ 3093714 (+)

Expression


Co-expression Network