ccn2b (LOC107550649,LOC107700780,LOC107712605,LOC107578025,LOC107754917,LOC107689532)


Basic Information

Item Value
gene id ccn2b
gene name LOC107550649,LOC107700780,LOC107712605,LOC107578025,LOC107754917,LOC107689532
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3617141 ~ 3622533 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218445.1
TCTCTGCTCTCCACTCCACTACAATCCTGccgtctgacacacacacacacacacacaccaaagaACCAAAACAAACCCGGAGTGTGTGCTTCTGTAGGGAACTCTTGGAAGAAATGGCCGGAACAGCATTCACCAGATCGTGCATCGTCCTCAGCTTGCTCATGCGTATGGCGCTGTGTCAGGACTGCTCTCAGCCCTGTGACTGCCCGGCCGAGGGCCCTTTGTGTCCCGCGGGCACCAGTCTGGTTCTGGACGGCTGCAGCTGCTGTAAAGTGTGCGCCCGACAGGCGGGAGAGCCCTGCTCTTTCCTGGAGCCATGCGACCATCATAAAGACCTGTATTGTGACTACGGAGTGCTGAGCGACACCGAGACAGGCATCTGCATGGCTCAAGAGGGTCAGACGTGTGACCTGGGCGGTGTGATTTACCGCAGTGGCGAGACGTTTCAGCCCAGCTGCAAACACCACTGTGTGTGCATGAACGGGGAGATTGGCTGCGTGCCGACCTGCGCCAGCAGCATACGGCTGCCCTCTCCTGACTGCCCTTATCCGAGACGCGTCCAGATCCCTGGCAAGTGCTGCGAGGAGTGGGTGTGCGACCAGATCCCACAGGAAGACACCTTCCAGTCAGCAATGGCTGGTAGGTCAATCGCGTATAGAGAGCTATCTGGTCAGGATGTCCAGCCCGAGAGCGCGAGGGACAACTGCATCGTTCAGACCACTGACTGGAGCGAATGCTCCGCCACCTGCGGCATGGGGGTGTCCTCTCGTGTCACCAACGACAATGAGCAATGCCAGCTGGAGCGGCAGACCCGCATGTGCATGATCCGCCCCTGCGATGCGGAGCTGGAAAAGGACATCAAGAGAGGGAAGAAGTGTGTGCGGACCCCAAAGAGTCAGCGCGGGATGCGTTTTGAACTGTCGGGATGCCAGAGCATCAGGCCGTACAAGCCCAAGTTCTGCGGGGTGTGTACGGACGGCCGCTGCTGCACCCCTCACTCCACCGTCACGGCCGAGGTGGAGTTCCTCTGTCCCGAGGGAGACTCCTTCAGGAGGAAGATGATGTTCATTAAGACCTGCTCCTGTCATCACGACTGCCCCCGTGAGAACGATATCTTCCTGGCCTCAAACTCACGGAGAATGACCGGGGACTATGATAACGACATGTGAGGAGCTGTCCGGtgtcacgcacacacacacacgcacacacacacacacacacacacacacacgcacacacacacacgctgacgATCAAGCGCATGCGCACACGAGGCAGCTCCGCGTTTTACTGGACCCTGATTTTCTCACGACTCGTGAGCAGAAAAGAAACGAGAATGTTTGACACGAAGCGAAAACTCCTACTTCtcctgttttgtattttgtgaaGCTCTGAAGTCATCCGGCTGTTTGACCGGTCCTGCCACAGCAGACCTAAAGCACTGAGAACTTGGTTTTAGGaagatagttcactcaaaaatgactcACGTTGTCGCAAACCTATCAACTGTTACGTTGCAGAACACTAAAAGAGTTATGAAGAATTTGGATGCAGCTCTTTTCCATTCCGTCAGTACAGTTCCACACAAGAGTTTCCAGATTTGGAAGCCATGATGTAACTCGTGAAAAGGAGCAGGATAACAATCTGGTCACTATACAATATAATTGTGTAGAAAAAGCTGCATGgcgttgctttaaatgctttaattctACGTTTGTGCCATGGGTTTGGAATAGCGTTGggtttaatttttatgttttttaaatgtattaatttagttatttttgggtaaacttgtCCTTTAAGACGTTGTGGACACGAAGCAACTAATTAAATCGAGTTAATTTCAAGAACGTTTTCCTCAATACAGGAATAGACTGAAAAGACAACGATGTAATCATACACttgatatgtatttttattgtattttttcgTTCGATTTGTCAATCGGGTTATCATTATTTACGATCATTTGTACCTTAAAGCAAGGAATAATATTTAACGGCTGACCTTAATAACTTTGTATCTGATTGAACCCGATCTGTCAAGTATGAAAACCGCTAATGAGTCCCAAAGTATTTGGGGAAGAAAACGAGGCCTAGATAATGAGATACTGCCTATGatgtttactgtttatttaataggAAATGAATCCTCGGAAAGGAACCAAACGATGACGAATACACCTTGTGTAAATACTGTAAGAAGACCGTGTACAGATTGTACTAATTTATGTAGCTcttaaatgtagttttgtttGTGTACTGTATTACTCTGTGTTCATTGTATTCACCTGGCAATGATACCGGCGAGTTCTTTTCTCATGCACTTTTATTTTCcaataaagaaattatatttttatata
>XM_043218446.1
GCTCTCTGCTCTCCACTCCACTACAATCCTGccgtctgacacacacacacacacacacaccaaagaACCAAAACAAACCCGGAGTGTGTGCTTCTGTAGGGAACTCTTGGAAGAAATGGCCGGAACAGCATTCACCAGATCGTGCATCGTCCTCAGCTTGCTCATGCGTATGGCGCTGTGTCAGGACTGCTCTCAGCCCTGTGACTGCCCGGCCGAGGGCCCTTTGTGTCCCGCGGGCACCAGTCTGGTTCTGGACGGCTGCAGCTGCTGTAAAGTGTGCGCCCGACAGGCGGGAGAGCCCTGCTCTTTCCTGGAGCCATGCGACCATCATAAAGACCTGTATTGTGACTACGGAGTGCTGAGCGACACCGAGACAGGCATCTGCATGGCTCAAGAGGGTCAGACGTGTGACCTGGGCGGTGTGATTTACCGCAGTGGCGAGACGTTTCAGCCCAGCTGCAAACACCACTGTGTGTGCATGAACGGGGAGATTGGCTGCGTGCCGACCTGCGCCAGCAGCATACGGCTGCCCTCTCCTGACTGCCCTTATCCGAGACGCGTCCAGATCCCTGGCAAGTGCTGCGAGGAGTGGGTGTGCGACCAGATCCCACAGGAAGACACCTTCCAGTCAGCAATGGCTGCGTATAGAGAGCTATCTGGTCAGGATGTCCAGCCCGAGAGCGCGAGGGACAACTGCATCGTTCAGACCACTGACTGGAGCGAATGCTCCGCCACCTGCGGCATGGGGGTGTCCTCTCGTGTCACCAACGACAATGAGCAATGCCAGCTGGAGCGGCAGACCCGCATGTGCATGATCCGCCCCTGCGATGCGGAGCTGGAAAAGGACATCAAGAGAGGGAAGAAGTGTGTGCGGACCCCAAAGAGTCAGCGCGGGATGCGTTTTGAACTGTCGGGATGCCAGAGCATCAGGCCGTACAAGCCCAAGTTCTGCGGGGTGTGTACGGACGGCCGCTGCTGCACCCCTCACTCCACCGTCACGGCCGAGGTGGAGTTCCTCTGTCCCGAGGGAGACTCCTTCAGGAGGAAGATGATGTTCATTAAGACCTGCTCCTGTCATCACGACTGCCCCCGTGAGAACGATATCTTCCTGGCCTCAAACTCACGGAGAATGACCGGGGACTATGATAACGACATGTGAGGAGCTGTCCGGtgtcacgcacacacacacacgcacacacacacacacacacacacacacacgcacacacacacacgctgacgATCAAGCGCATGCGCACACGAGGCAGCTCCGCGTTTTACTGGACCCTGATTTTCTCACGACTCGTGAGCAGAAAAGAAACGAGAATGTTTGACACGAAGCGAAAACTCCTACTTCtcctgttttgtattttgtgaaGCTCTGAAGTCATCCGGCTGTTTGACCGGTCCTGCCACAGCAGACCTAAAGCACTGAGAACTTGGTTTTAGGaagatagttcactcaaaaatgactcACGTTGTCGCAAACCTATCAACTGTTACGTTGCAGAACACTAAAAGAGTTATGAAGAATTTGGATGCAGCTCTTTTCCATTCCGTCAGTACAGTTCCACACAAGAGTTTCCAGATTTGGAAGCCATGATGTAACTCGTGAAAAGGAGCAGGATAACAATCTGGTCACTATACAATATAATTGTGTAGAAAAAGCTGCATGgcgttgctttaaatgctttaattctACGTTTGTGCCATGGGTTTGGAATAGCGTTGggtttaatttttatgttttttaaatgtattaatttagttatttttgggtaaacttgtCCTTTAAGACGTTGTGGACACGAAGCAACTAATTAAATCGAGTTAATTTCAAGAACGTTTTCCTCAATACAGGAATAGACTGAAAAGACAACGATGTAATCATACACttgatatgtatttttattgtattttttcgTTCGATTTGTCAATCGGGTTATCATTATTTACGATCATTTGTACCTTAAAGCAAGGAATAATATTTAACGGCTGACCTTAATAACTTTGTATCTGATTGAACCCGATCTGTCAAGTATGAAAACCGCTAATGAGTCCCAAAGTATTTGGGGAAGAAAACGAGGCCTAGATAATGAGATACTGCCTATGatgtttactgtttatttaataggAAATGAATCCTCGGAAAGGAACCAAACGATGACGAATACACCTTGTGTAAATACTGTAAGAAGACCGTGTACAGATTGTACTAATTTATGTAGCTcttaaatgtagttttgtttGTGTACTGTATTACTCTGTGTTCATTGTATTCACCTGGCAATGATACCGGCGAGTTCTTTTCTCATGCACTTTTATTTTCcaataaagaaattatatttttatata

Function

NR:

description
PREDICTED: connective tissue growth factor-like isoform X1

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218445.1 True 2365 mRNA 0.48 5 3617143 3622533
XM_043218446.1 False 2355 mRNA 0.48 5 3617141 3622533

Neighbor

gene id symbol gene type direction distance location
stx12 stx12,LOC107700764,LOC107712603,LOC107689533 coding upstream 26488 3583094 ~ 3590653 (+)
trnau1apa LOC107754918,LOC107689564,LOC107567591 coding upstream 34751 3577978 ~ 3582390 (+)
paqr7a LOC107567589,LOC107754930,LOC107689535 coding upstream 46157 3567014 ~ 3570984 (+)
nr0b2b NA coding upstream 108430 3504109 ~ 3508711 (+)
tbxta ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085 coding upstream 125917 3486502 ~ 3491224 (+)
epb41a epb41a,epb41,LOC107689531,LOC107569307,LOC107754926 coding downstream 1242 3623775 ~ 3679373 (+)
lrp12 lrp12,LOC107754924,LOC107689529,LOC107714470,LOC107559399,LOC107668711,LOC107569303 coding downstream 217708 3840241 ~ 3852009 (+)
LOC122323814 NA coding downstream 236931 3859464 ~ 3862610 (+)
LOC122323815 NA coding downstream 240695 3863228 ~ 3891965 (+)
LOC122323824 NA coding downstream 427377 4049910 ~ 4053157 (+)
G130150 NA non-coding upstream 75747 3465239 ~ 3541394 (+)
G130148 NA non-coding upstream 76373 3537502 ~ 3540768 (+)
G130168 NA non-coding upstream 98743 3516460 ~ 3518398 (+)
G130138 NA non-coding upstream 118587 3496699 ~ 3498554 (+)
G130141 NA non-coding upstream 176954 3439713 ~ 3440187 (+)
G130313 LOC105892072 non-coding downstream 275528 3898061 ~ 4076098 (+)
G130315 NA non-coding downstream 307680 3930213 ~ 3935051 (+)
G130318 NA non-coding downstream 322862 3945395 ~ 3964718 (+)
G130336 NA non-coding downstream 528144 4150677 ~ 4160027 (+)
G130338 NA non-coding downstream 553735 4176268 ~ 4199257 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other upstream 40948 3572262 ~ 3576193 (+)
G130077 NA other upstream 523427 3093067 ~ 3093714 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other upstream 638725 2959593 ~ 2978416 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other upstream 723540 2889623 ~ 2893601 (+)
LOC122323290 NA other upstream 729513 2885413 ~ 2887628 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other downstream 137334 3759867 ~ 3760985 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other downstream 622235 4244768 ~ 4259085 (+)
ptpn2b ptpn2b,LOC107738314,LOC107552315,LOC107672871,LOC107748370,LOC107666587,LOC108438851 other downstream 772052 4394585 ~ 4406579 (+)
znf706 znf706,LOC107672881,LOC103394271,LOC107748367,LOC107552318,LOC107698658 other downstream 837342 4459875 ~ 4464904 (+)
pabpc1b pabpc1b,LOC107672855,LOC107698655,LOC107552320,LOC107748365,LOC107738317,LOC107550093 other downstream 861167 4483700 ~ 4493780 (+)

Expression


Co-expression Network