apoa4a (apoa4a,LOC107693394,LOC107599550,LOC107748768,LOC107739627)


Basic Information

Item Value
gene id apoa4a
gene name apoa4a,LOC107693394,LOC107599550,LOC107748768,LOC107739627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17087423 ~ 17088750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218462.1
GCAGGGCACTACCTTCTGGACTTTACTGCCTTTATCAGAGCTCAGCAACCCATTTAAATACAGTGCTGATACCTTCTCAACACTTACACACAGAAGAAGACAAGAGCAAGagTGCGTATAATCATGAAGGTCTTGACAGTGTTTGTCATCGCAGTTTTTACTGGTTGTCAGGCCAATATGTCATGGCAGGACCAGTCAGTGCCCAGTATGGATCTGGTGAAAAACGCCTTCTGGAATTATGTGTCTCAGGCAACCCTCACAACTGAGGACACCCTACAGATGATCAGAAACTCAGAACTGGGTCAAGAAATCAATGACAGGATCTCTCAAAGTACAGATGCAATCAACAAATACACCCTGGCCGTTCAAAGTCAGGTAAATCTTCTGACTCAAGACTTGATGGCCAAGCTTTCTCAAGAGGCAGATCAACTAAAACTGCGTGTggaacaggaaatgacatctgTGCAGTTCCAGCTCAAGCCTTACCTTGAAGAGATCAGAGGAGATATCGAGAAGCAGGTTGAGCAGCTGAAGAAGGATGCGGCCCCATATGCAGAGGCCCTGAACTCTGAGGCCTTGAGATCTACTCTGGTCCAGGGTGCTGAGGAGCTGAAGGCCAAGCTGGAGAGAAGTTTGATGGAGATGGGTCCTCAAACCGAGGAGCTGAAGCAGAAATTGGACCATCACTTTTTGGAGTTTCAGATGGGCATGTCGCCATTAGCCCAAACCTTTCAGAGTCAGCTGGCCCAGAGAAGTCAAGAGTTTCAGAAGAATCTGGCTCCCTATTCAGAGGAGCTCAGAAAACTGGATCCATACGCCCAAAACCTGAAGGCCCAGTTAACAGCTCTCTGGGAGTCCTTTGCCAAGGACAAGCAGTCTTAAGAGACTTCTGGGAACTGCAAAAGGACACTTCTGTTATTATTGGTGGTTTCActtaatatatttctatgttGCTCATGtatgtttttccaaaaaatgtaataaaataatacaaacactAATTTATAATGTGGTGGtcacctaaaaaataaaaacactattaatatACTA

Function

symbol description
apoa4a Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in intestine; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

NR:

description
PREDICTED: apolipoprotein A-IV-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218462.1 True 1050 mRNA 0.44 4 17087423 17088750

Neighbor

gene id symbol gene type direction distance location
apoea apoe,LOC107565590,LOC107748767,LOC107656622,LOC107739531,LOC107599552 coding downstream 1507 17083910 ~ 17085916 (-)
si:ch73-347e22.4 LOC107693273,LOC107748715,LOC107565585,LOC107739595 coding downstream 3880 17072331 ~ 17083543 (-)
si:ch73-347e22.8 NA coding downstream 35804 17048539 ~ 17051619 (-)
msmp2 si:ch1073-70f20.1,LOC107748766,LOC107565577,LOC107693399,LOC107656628,LOC107599557 coding downstream 44434 17041975 ~ 17042989 (-)
si:ch73-109i22.2 LOC107748764,LOC107667791,LOC107739537,LOC107656629,LOC107599558,LOC107579479,LOC107565563 coding downstream 121308 16959151 ~ 16966115 (-)
tomm40l tomm40,tomm40l,LOC107748716,LOC107739529,LOC107656621,LOC107599548 coding upstream 1869 17090619 ~ 17094505 (-)
LOC122324173 LOC107693391,LOC107565587,LOC107599547,LOC107656619,LOC107739594,LOC108444404,LOC103037120,LOC105028270,LOC106588242 coding upstream 6784 17095534 ~ 17104511 (-)
lipea LOC107599546,LOC107739528,LOC107748718,LOC107693390,LOC107565586,LOC107656618 coding upstream 16190 17104940 ~ 17125195 (-)
ago3b ago3b,LOC107599544,LOC107656616,LOC107693387,LOC108272767 coding upstream 53077 17141827 ~ 17159268 (-)
si:dkey-211g8.8 NA coding upstream 90119 17178869 ~ 17184117 (-)
G133887 NA non-coding downstream 30556 17056425 ~ 17056867 (-)
G133886 NA non-coding downstream 31112 17056101 ~ 17056311 (-)
G133865 NA non-coding downstream 45630 16974031 ~ 17041793 (-)
G133861 slc9a3.2,LOC107656591,LOC107739626,LOC107693290,LOC107748744,LOC107599577,LOC107565571 non-coding upstream 38916 17127666 ~ 17131995 (-)
G133902 NA non-coding upstream 75082 17163832 ~ 17164115 (-)
LOC122323277 NA non-coding upstream 75944 17164694 ~ 17168108 (-)
G133919 sbk2,LOC107724114,LOC107693243,LOC107739621,LOC107656585,LOC107599589 non-coding upstream 159934 17248684 ~ 17251304 (-)
G133920 NA non-coding upstream 171960 17260710 ~ 17261499 (-)
trnap-ugg_15 NA other downstream 186647 16900705 ~ 16900776 (-)
LOC122324115 NA other downstream 188822 16897995 ~ 16898601 (-)
LOC122324113 NA other downstream 190280 16896108 ~ 16897143 (-)
LOC122324112 NA other downstream 194842 16891692 ~ 16892581 (-)
LOC122324114 NA other downstream 196549 16889829 ~ 16890874 (-)
LOC122323474 LOC107589464,LOC107589461,LOC107656564,LOC107739585,LOC107599573,LOC107656565,LOC107739586,LOC107599590,LOC107693268,LOC107739622,LOC107589465,LOC107724065,LOC107656563 other upstream 125211 17213961 ~ 17218790 (-)
G133949 NA other upstream 194582 17283332 ~ 17284744 (-)
G133948 LOC107693373,LOC107724108,LOC107739520,LOC107599537 other upstream 241947 17330697 ~ 17334234 (-)
LOC122324164 LOC107589398,LOC107693356,LOC107724088,LOC107589397,LOC107599520,LOC107665487,LOC107724089 other upstream 524696 17613446 ~ 17616277 (-)
s100a10a s100a10a,LOC107599503,LOC107693282,LOC107589481,LOC107589504,LOC103356278 other upstream 840939 17929689 ~ 17935436 (-)

Expression


Co-expression Network