hpcal4 (hpcal4,LOC107562761,LOC107687092,LOC107691524,LOC102228321,LOC107745708)


Basic Information

Item Value
gene id hpcal4
gene name hpcal4,LOC107562761,LOC107687092,LOC107691524,LOC102228321,LOC107745708
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8197711 ~ 8215983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218467.1
CGCTCCATTCATCCTCCTCATCACAGAGAAGAAACAAATAGGTGGCGTTTCTCTGCTGAAGTACAGTTTACTCCTCCAACCGCGAGAGTACAAGTCACTTTGAGCGATAAATAAAAGACCGGATACTTCGAAATTCGGAGAGGTGTAGAAAGATGGGGAAACACAACAGCAAGCTTGCTCCTGAGGTGCTTGATGACTTGACCAAGAGTACAGAGTTCAACGAAGCTGAGCTGAAGCAATGGTATAAGGGGTTCCTGAAGGACTGTCCATCTGGCATCCTCAATCTGGAAGAGTTCCAGCAACTCTATGTCAAGTTCTTTCCTTATGGCGACGCTTCAAAATTCGCCCAGCATGCCTTTCGGACGTTCGACAAAAACGGTGATGGCACCATTGACTTCAGGGAGTTCATCTGCGCGCTGTCCATCACTTCCAGGGGAAGTTTTGAGCAGAAACTCAACTGGGCCTTCAACATGTACGACCTGGACGGAGATGGCAAGATCACGCGCATGGAGATGCTGGAGATCATCGAGGCAATCTACAAGATGGTTGGGACGGTGATCATGATGCGTATGAACGAAGACGGGCTGACCCCACAACAGCGTGTGGACAAAATCTTCAGCAAGATGGACAAGGACCACAACGACGAGATCACGCTGGAGGAGTTCAAAGAGGCGGCCAAGAGCGACCCCTCCATTGTTCTTTTACTGCAGTGTGACATGCAGAAGTAAGGAaggagaggaggaagatgagTGAAGTGGGCTGGGGGTGTAGGGAGGGGAGGAGAACCATGTACAGACTTCTAGAGAGATGTAGGTAATAGATAATGAGAGGAAATGTACATACAGCTGAACATAAGTTAGAGCGCATGATAATCCTGCGAATGTTAAGGGAAAGATTATGGTGATTTGAAATGATTAGTCAAAGTCATGCAAGAGAGAGTCTTTTCCACCCCGTATCACTTATTACACATTCTGTCTGCTTTCCAGCCTCTAGAGAGAgtcagaaagttcaaaagattgAATCCCTAATACAAGACATTTCTTTGCTCAAAAAGGTCACTTCTGAGCCAACTAACTCCCTTTTAGGATTAGAAGCATATTCGactaatttaatgtaataataatacataatgaaatgaaaattacatttgattctGATCCATTTTTTAATCAAGATTTTTTAAAGATagaatttttttgcagttttgggcatgactttatttttcACTCAGAAGTTGCCAGTACACTTGACAAATAACTACAAAGAAGCGGCAAACAAGACATtgattaaatatacaatttagaaagatttgggggtttttttcactacaaaaaaatctgattatttagtgttccaatttatttattttcttttatttattggtgGATATTGAAATGACCTGGTATTTAAGATACTTAATAGTTCATGCTCATTTCACATTACTTTTCTGTCATCTAACACTCACTTGAAGTTATTACtatctttaaaacacacaaatcattTAACAACACCGTTAAATATAATCGGCAGTAAATTTGTTTGAaattttcatactgtacatttttgtttttaattgtatttcatttattacgacaaaactgcatttttttctattattcatttatctaCAGAAGAGATTACAAGAACACAAGAAAGAGGGCTTCCGGTTATCAGTTATTGCGCATAACAAAAATGATCTGCTTATCTATTGGCCAAATGTttctactattttttaaattatttctctatttgtttatttttcgcCCAGATTGAAAATGTCAGAACAGCAACGTGCCCGGTTACAGGCTGTGCCAGAGTAAGAGCATTACAAGAGTTCAGGGCAGGACTGAATCCTTTGACATTTGTGGGTGCCTTCATATACAGCGCTCTAGCCCACCAGATAACACTGCAGCAAATAATACTGACACATTAGTGGAGTTTGAACGCATTGCCATAATCTGACGATACCATCACGGAGCGTAGTCTAATTGCGTTATTGGCCGAGATAAAACTGAAAAGCCGTGGCTGAGTGAAAGGGTGGTATTTCGTAACGGGTCATGCCAGAAAATGAGGAGTAGCTTTAGCTAGAGAACTGACAATATATGTACATGATGACATTTTGTACATAACGCCTATACACATGCttaatatgtacatgtaaatgtttctcTACCTTAGAACTGCTTTCATAATCTGACACGGCTGCAATGATTTTTGtgctaacacaaaaaaaacccttattGTACTTACGTGTGTGGGTCTGTCTGCGGAAGAGGGAAACTaacgtgtgtgttttcttcactATAATCTGGTGCGAAAGCTGCAGCGTGCGAGTGTGTGAGTTCACGTGAGAGAACACAAATGCCTCAACCTTTGTATTAATTCTTTCTTATGATCTTCACGCCAGTGCTAGGAGTATTACGCCGTCGTGTTTGTTGTTACCTGGTGCGACTGGTgagctgtgtgtttctttttcGGTCATGAGAGCTTTAGTTCTGTCTTTATTAGTTCATCTCTTCTTTCATAAGCTTTGCAGGTGTCACCCAAGGGGATTTTAATTGTATGAATATTGTCAATGTTCAACTACCTTTCTTTATTCTTGTAATATAAGTGGACACAAATGTAAACCAGACGCAGAATGTGTAGTACTTGTTAATGTTACTATGCCGCAATACTTACTAACATGAAATTACTGTTGCACTATGTAGTGAGTAGAGGAAATAGCTTTAGTTTTAGACTGCCTCCCTGTGGTGAAACATGTTAATTCATTTACCCAGTTAACTTAGCACCAGATCCTAGCAAACGCTAGGATTTCACTGAGAACCAGGGCTGTCGGGGGTCCAGCTGAGTTCCCCACCTGATATAGTTTGTGTGAATTTTAACAGCAACCCTCCTTAAAGTACATAAATCTAATTAGAGCAGATTTGGAGCAATTTATCTCACCAaagaatcctctgcagtgaatgggtgccgtgagtccaaactgttaataaaaacatcacaatgataaagaagtaatccacagcactccgtTCTCTCAGTTACGAGTGTCCGTAGGAATCAAATCATGCgttaaggcattttaactttaaactgttgCTTCCTGCCAAAATATGAGTGAtctgtaataattattcattcagTTCACTGCACAGGATCCACTGATGAGcagatttctcttttaaaactcTATACTTCTAGATACCAATGAGGAGGCTCTTACCGGAACATCGCGCTACAAATAAGCAatgattatttgtattatttatccATCTTTATCTAAGTGACTTATTTTTCATTAGTGAAAGGCTGTAGCAATACTCAAAGATGAATCCGATTTATTTTGCAGCATATCCTGTGACTTTACATCCTCAGCGATGTAGAACAGCAGTTGAAGCAATTTCTTTACTCGCCTATAAGCAGATTTTTGTCACAACTGCTTTTACACTACTCATAATCTTGTGAAATCCTCGTGGGATGTGTCTCCTGTCGCATTCACACACCTCTGCTGCTGTTTTACACCTCTGCTCATGAGCGGCAAGTGTAATCTCTTTCTTATTGTGTCACATGGTAGCTTTCTTTATACTAAACTGTGCTatcccttgtgaaaaagaagtgtgcttaaCTGTACGTGCACATGCAGTGTACTTCAAATTTTTTAGgtgtattaaaaattaaaaaaaaaggtaatataatattatggaATTAAAAGGCCACTTAAAGAAAGTATACTTGTATAACTATTTCTTAATACACTTAGGTAACCTTTGTAATAATGTCAcaattaaaagtcattttaaatcattatgtgtaaaaaaaatctcttgtcATGATTcgtttttattaacatattaaagcTCATGTAAAGTGCTACTttggttaatttattttaaaagcactaaactacaacttcatcattacaaatgtatacatacagaattatttaaatatctgaCATAAAATGTTACACGGAATtgagattttaaatgaattcatgtTAATACAACGA

Function

symbol description
hpcal4 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL4 (hippocalcin like 4).

NR:

description
PREDICTED: hippocalcin-like protein 4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23848 HPCAL4; hippocalcin-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218467.1 True 4009 mRNA 0.38 4 8197711 8215983

Neighbor

gene id symbol gene type direction distance location
bag6l LOC107687076,LOC107691523,LOC107745707,LOC107709282 coding downstream 1892 8182020 ~ 8195819 (-)
abcf1 abcf1,LOC107745711,LOC107687077,LOC107709273 coding downstream 23239 8164868 ~ 8174472 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107691520,LOC107745712,LOC107687078 coding downstream 35548 8150959 ~ 8162163 (-)
agr2 agr2,LOC107584355,LOC107687097,LOC107745729,LOC107562756,LOC107709281,LOC107691548 coding downstream 50226 8145636 ~ 8147485 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 395990 7786886 ~ 7801721 (-)
myclb myclb,LOC107584272,LOC107709270,LOC107562763,LOC107691528,LOC107687096,LOC107724275 coding upstream 106666 8322649 ~ 8326971 (-)
kiaa1522 kiaa1522,LOC107724336,LOC107584271,LOC107709267,LOC107568804 coding upstream 160225 8376208 ~ 8412834 (-)
rbbp4 rbbp4,LOC107568807,LOC107709266,LOC107584269,LOC105015627 coding upstream 214698 8430681 ~ 8435138 (-)
bzw2 bzw2,LOC107724358,LOC107702135,LOC107709265,LOC107691535 coding upstream 220308 8436291 ~ 8449744 (-)
arl4ab arl4ab,LOC107702133,LOC107724349,LOC107584268,LOC107555559,LOC107709262,LOC107696203,LOC108425359 coding upstream 340917 8556900 ~ 8559488 (-)
G131464 NA non-coding downstream 20871 8175383 ~ 8176840 (-)
LOC122323284 NA non-coding downstream 53516 8142931 ~ 8144195 (-)
LOC122324233 NA non-coding downstream 113815 8078100 ~ 8083896 (-)
LOC122324217 NA non-coding downstream 150832 8046276 ~ 8046879 (-)
LOC122323519 NA non-coding downstream 200454 7996087 ~ 7997257 (-)
G131495 NA non-coding upstream 8836 8224819 ~ 8272803 (-)
G131501 NA non-coding upstream 32838 8248821 ~ 8249227 (-)
G131506 NA non-coding upstream 64011 8279994 ~ 8280260 (-)
G131507 NA non-coding upstream 66618 8282601 ~ 8282824 (-)
G131508 NA non-coding upstream 67115 8283098 ~ 8283441 (-)
khdrbs1b LOC107745714,LOC107691518,LOC107584277,LOC107687088,LOC107709277,LOC107562753 other downstream 68441 8118949 ~ 8129270 (-)
G131373 NA other downstream 592568 7602133 ~ 7605143 (-)
LOC122323248 LOC107687071 other downstream 745795 7445758 ~ 7451916 (-)
LOC122324169 si:dkeyp-46h3.1,LOC107694323,LOC107584363,LOC107691540,LOC107754838 other downstream 799765 7395180 ~ 7397946 (-)
LOC122323893 ppp1r11,LOC107595604,LOC107694341,LOC107711309,LOC107677477 other downstream 837568 7356621 ~ 7360143 (-)
trit1 trit1,LOC107691527,LOC107687082,LOC107709271,LOC107562762,LOC107724344 other upstream 71162 8287145 ~ 8320901 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other upstream 438515 8654498 ~ 8659486 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other upstream 508523 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other upstream 511276 8727259 ~ 8738786 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other upstream 1092737 9308720 ~ 9309352 (-)

Expression


Co-expression Network