LOC122324206 (pdcd6ip,LOC107669307,LOC107593555,LOC107706184,LOC107742851,LOC107591619,LOC107696546)


Basic Information

Item Value
gene id LOC122324206
gene name pdcd6ip,LOC107669307,LOC107593555,LOC107706184,LOC107742851,LOC107591619,LOC107696546
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13228815 ~ 13240727 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218473.1
ctctgcctttgtttttgtCCGTCTGCAGTGTTCTCATTCTCCACTAGAACTGCGTTTCCACCGGGCCCAAATGGCGACGTTTATTTCTGTCCCGTTGAAGAAGTCTTCGGAGGTCGACTTAGTAAAACCGTTGTCGAAATTTGTAACGTCCACGTATCCTCCCGGCGAGGAGCAGGCGGAGTATCTCCGTGCCGTGGAAGAGCTCAATAAGCTGCGGAAAAGTGCTCTTGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAAATCCTGCTTCGATATTATGATCAGCTCTGTGCAATTGAACCCAAATTTCCTTTTACAGAGttatgtcTGACATTTACATGGAAAGATGCTTTTGATAAAGGATCTCTTTTTGGAGGCTCAGTCAAGCTTGCATTGGCAAGTTTAGGTTATGAGAAGACGTGTGTGCTGTTTAATGTGGGCGCCCTGGCCAGTCAGATTGCTTCTGAGCAGAATCTCGACAATGACGAGGGACTGAAAACCGCCGCCAAATTCTACCAGCTGGCGAGTGGTGCGTTCGCTCATATAAAGGACACAGTGCTCTCCGCACTGAATAGAGAGCCCACCATGGACATCTCCCCCGAGACGGTGGGCACGCTTAGTCAGATCATGCTCAGCCAGGCACAGGAGGTCTTCGTTCTCAAAGCCACTGCTGATAAGATGAAGGACGCCATTGTCGCTAAACTTGCCAACCAGGCGGCAGATTACTACGGCGACGCTTTTAAGCAATGTCAATACAAAGAGAATCTGCCTAAGtatttttatttccagGAAGTGCTTCCCGTCCTCGCCGCCAAGCACTGCATGATGCAGGCCACTGCAGAGCTGCACCAGTCAGCCTTggccaatcagaagaaaaaATTCGGAGAGGAGATCGCTCGGCTGCAGCACGCCACAGAGCTGGTGAAGACCGCAGCTTCTCGATACGATGAGTATGTTAATGTAAAGGACCTCTCAGATAAGATCAGTCGCGCCCTCACAGCTGCAAAGAAAGACAATGACTTCATTTATCATGACCGCGTGCCAGAGGTCAAAGACCTGGAGCACATTGGCAAAGCATCTCTGGTCAAAGCAACTGCAATCCAGACACCACTGAGCCAGAAGTTCACAGatCTGTTTGAGAAGATGGTGCCGATGGCAGTGCAGCAGTCAGTGAGTGCAGCCAATTCCAGGAAAGCTGACACAGTCAACAGACTGATTGGTAGCATGAGGGAAGCAACGAATCTCTGCAATGGGGTGTTGGCGTCTTTGAACCTGCCAGCTGCTCTAGAAGATCTGTCAGGAGATGCAGTCCCTCAGTCTATCCTTGAGAAAAGCCGTGCTATTGTTCAGCAGGGTGGCCTACAGAGTATTGAGCAGCTTATTAAAGATCTGCCCGAACTACTGCAGAGGAACCGTGAGATCCTGGATGAGTCCTTGAAGATGTTAGATGATGAGGAAGCAACAGACAATGAACTCAGAGGCAAATTCAATCAGCGCTGGAACAGAACTCCCTCTGGAGATCTGTATAAACCACTCAGAGCAGAGGGAAATAATTTTCGCAATATACTGGACAAGGCAGTGCAGGCTGATCAGGTGGTGAGAGAGCGTTACACTGCACATTGTGAGATGATTGCTTTGCTCTGTAAGCCAGAGAATGAGCTCAGTGCCGCCATACCGTCTGCCAACCCTGCCAAGACTCTGCAGGGCAGTGAGGTGGTAAACGTGTTGAGAGCTCAGCTGGCTCAGCTGGATGAGGTGAAGAGGGAACGGGAAGTTCTGGAGGGAGAGGTGAAGTCTGTGACTTTTGATATGACGGCAAAGTTCCTTACAGCACTGGCTCAAGATGGTGCTATTAACGAAGAGGTTCTGACCACCAGTGAGATAGACACTCGTTACGGCTCTCACACGCAACGTGTTCAGCAGAATTTGCGCAGACAGGAAGAACTGCTGTCACAGATACAGGTGTCTCATCAGGAGTTTTCAGTACTCAAGCAGTCCAACTCTGAGGCTAATAACAGAGAGGAGGTCTTGAAGAAGCTCGCCTCAGCCCACGATAGCTACATTGAGATCAGCTCCAATATCAAAGAGGGCACTAAATTCTACAACGATCTGACAGAAATCCTCTTAAAGTTTCAAAATAAGTGCAGCGACATTGTCTTCGCTCGCAAAACGGAGAGGGATGAATTGCTCAAGGAGCTACAGCAGAGCATCGCTCGTGAGCCGAGCGCTCCTTCATTCAACGTCCCATCATACCAGTCCAACACTCCTGTTCCTGCCCCAGGAGGTCCGACCCCTGCCCCCAGGACTGTGTTTACCCAGCAGCAGCCTCAGGCTAAACCCCAGCCGCCAGCCAGACCGCCACCGCCTAACGTCACTCCTCTGGCGGCCAGTACTTCAGCTCCCGTCAGTACTCCAGTGGCTCCCAGCAGCACTAATCCCCCACCTGTTGCACCACCCTCACAGGCTCAAGGACCACCCTACCCAACTTATCAAGGCTACCCGGGGTATTACCAGATGCCGATGGCTTATAACCCCTATGCGTATGGGCAGTTTAATATGCCATACATGCCCTATCAGGCCCAGGGGCAGGCTGGATACCCTGGAGCCCCTCCTGCACAGCAGCCCTACCCCTATCCTCAACAACCACCACAGCAACAGCCCTACTACCCCCAGCAGTAGAGCATACCTCTATCTCCTACAGCCACACTCATTCCTGTAAACTAGCACTCCTCTTACTGCACTCAACTATTAACACTCACTCTTGCTCTCTACTTAACATCTGGCTTTATCTGGCTCCGCCTCCTCTTTGTGGGTGGATATTTAGGCCAGTGTTCACAAAGCAGGTGTGCTCATCGAGGGAAGATCtgatctctgtctctctctctctctctctctttctctctgtcttacCCTCTAGCCCAAAGTGAAGCTGCTGGCTGCCTGCCACTGCTTATatcttatttttgtaatgaatacTGACATATAATCTAATGCAAGAGATGTTGATTTCTTAccttgatgatgatgatttaatTGCTGAGAGAAAGACCACGGTTCTGTCTTACTGTAACCCTAGTTGTATTATTATACCTCCTTCTGTTCGGTCTACAATCATCGCTTCGGGAAAGGAACAGTTACACAGCTTAGAGAATGGATTCGTCActaaaaatagttcatttttttgtgtttctattGTTTTCATGTGATTAAAACCTGTCTGATATTAAA
>XM_043218474.1
ctctgcctttgtttttgtCCGTCTGCAGTGTTCTCATTCTCCACTAGAACTGCGTTTCCACCGGGCCCAAATGGCGACGTTTATTTCTGTCCCGTTGAAGAAGTCTTCGGAGGTCGACTTAGTAAAACCGTTGTCGAAATTTGTAACGTCCACGTATCCTCCCGGCGAGGAGCAGGCGGAGTATCTCCGTGCCGTGGAAGAGCTCAATAAGCTGCGGAAAAGTGCTCTTGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAAATCCTGCTTCGATATTATGATCAGCTCTGTGCAATTGAACCCAAATTTCCTTTTACAGAGttatgtcTGACATTTACATGGAAAGATGCTTTTGATAAAGGATCTCTTTTTGGAGGCTCAGTCAAGCTTGCATTGGCAAGTTTAGGTTATGAGAAGACGTGTGTGCTGTTTAATGTGGGCGCCCTGGCCAGTCAGATTGCTTCTGAGCAGAATCTCGACAATGACGAGGGACTGAAAACCGCCGCCAAATTCTACCAGCTGGCGAGTGGTGCGTTCGCTCATATAAAGGACACAGTGCTCTCCGCACTGAATAGAGAGCCCACCATGGACATCTCCCCCGAGACGGTGGGCACGCTTAGTCAGATCATGCTCAGCCAGGCACAGGAGGTCTTCGTTCTCAAAGCCACTGCTGATAAGATGAAGGACGCCATTGTCGCTAAACTTGCCAACCAGGCGGCAGATTACTACGGCGACGCTTTTAAGCAATGTCAATACAAAGAGAATCTGCCTAAGGAAGTGCTTCCCGTCCTCGCCGCCAAGCACTGCATGATGCAGGCCACTGCAGAGCTGCACCAGTCAGCCTTggccaatcagaagaaaaaATTCGGAGAGGAGATCGCTCGGCTGCAGCACGCCACAGAGCTGGTGAAGACCGCAGCTTCTCGATACGATGAGTATGTTAATGTAAAGGACCTCTCAGATAAGATCAGTCGCGCCCTCACAGCTGCAAAGAAAGACAATGACTTCATTTATCATGACCGCGTGCCAGAGGTCAAAGACCTGGAGCACATTGGCAAAGCATCTCTGGTCAAAGCAACTGCAATCCAGACACCACTGAGCCAGAAGTTCACAGatCTGTTTGAGAAGATGGTGCCGATGGCAGTGCAGCAGTCAGTGAGTGCAGCCAATTCCAGGAAAGCTGACACAGTCAACAGACTGATTGGTAGCATGAGGGAAGCAACGAATCTCTGCAATGGGGTGTTGGCGTCTTTGAACCTGCCAGCTGCTCTAGAAGATCTGTCAGGAGATGCAGTCCCTCAGTCTATCCTTGAGAAAAGCCGTGCTATTGTTCAGCAGGGTGGCCTACAGAGTATTGAGCAGCTTATTAAAGATCTGCCCGAACTACTGCAGAGGAACCGTGAGATCCTGGATGAGTCCTTGAAGATGTTAGATGATGAGGAAGCAACAGACAATGAACTCAGAGGCAAATTCAATCAGCGCTGGAACAGAACTCCCTCTGGAGATCTGTATAAACCACTCAGAGCAGAGGGAAATAATTTTCGCAATATACTGGACAAGGCAGTGCAGGCTGATCAGGTGGTGAGAGAGCGTTACACTGCACATTGTGAGATGATTGCTTTGCTCTGTAAGCCAGAGAATGAGCTCAGTGCCGCCATACCGTCTGCCAACCCTGCCAAGACTCTGCAGGGCAGTGAGGTGGTAAACGTGTTGAGAGCTCAGCTGGCTCAGCTGGATGAGGTGAAGAGGGAACGGGAAGTTCTGGAGGGAGAGGTGAAGTCTGTGACTTTTGATATGACGGCAAAGTTCCTTACAGCACTGGCTCAAGATGGTGCTATTAACGAAGAGGTTCTGACCACCAGTGAGATAGACACTCGTTACGGCTCTCACACGCAACGTGTTCAGCAGAATTTGCGCAGACAGGAAGAACTGCTGTCACAGATACAGGTGTCTCATCAGGAGTTTTCAGTACTCAAGCAGTCCAACTCTGAGGCTAATAACAGAGAGGAGGTCTTGAAGAAGCTCGCCTCAGCCCACGATAGCTACATTGAGATCAGCTCCAATATCAAAGAGGGCACTAAATTCTACAACGATCTGACAGAAATCCTCTTAAAGTTTCAAAATAAGTGCAGCGACATTGTCTTCGCTCGCAAAACGGAGAGGGATGAATTGCTCAAGGAGCTACAGCAGAGCATCGCTCGTGAGCCGAGCGCTCCTTCATTCAACGTCCCATCATACCAGTCCAACACTCCTGTTCCTGCCCCAGGAGGTCCGACCCCTGCCCCCAGGACTGTGTTTACCCAGCAGCAGCCTCAGGCTAAACCCCAGCCGCCAGCCAGACCGCCACCGCCTAACGTCACTCCTCTGGCGGCCAGTACTTCAGCTCCCGTCAGTACTCCAGTGGCTCCCAGCAGCACTAATCCCCCACCTGTTGCACCACCCTCACAGGCTCAAGGACCACCCTACCCAACTTATCAAGGCTACCCGGGGTATTACCAGATGCCGATGGCTTATAACCCCTATGCGTATGGGCAGTTTAATATGCCATACATGCCCTATCAGGCCCAGGGGCAGGCTGGATACCCTGGAGCCCCTCCTGCACAGCAGCCCTACCCCTATCCTCAACAACCACCACAGCAACAGCCCTACTACCCCCAGCAGTAGAGCATACCTCTATCTCCTACAGCCACACTCATTCCTGTAAACTAGCACTCCTCTTACTGCACTCAACTATTAACACTCACTCTTGCTCTCTACTTAACATCTGGCTTTATCTGGCTCCGCCTCCTCTTTGTGGGTGGATATTTAGGCCAGTGTTCACAAAGCAGGTGTGCTCATCGAGGGAAGATCtgatctctgtctctctctctctctctctctttctctctgtcttacCCTCTAGCCCAAAGTGAAGCTGCTGGCTGCCTGCCACTGCTTATatcttatttttgtaatgaatacTGACATATAATCTAATGCAAGAGATGTTGATTTCTTAccttgatgatgatgatttaatTGCTGAGAGAAAGACCACGGTTCTGTCTTACTGTAACCCTAGTTGTATTATTATACCTCCTTCTGTTCGGTCTACAATCATCGCTTCGGGAAAGGAACAGTTACACAGCTTAGAGAATGGATTCGTCActaaaaatagttcatttttttgtgtttctattGTTTTCATGTGATTAAAACCTGTCTGATATTAAA

Function

symbol description
pdcd6ip Is expressed in cloaca; epidermis; otic vesicle; and sensory system. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein).

NR:

description
PREDICTED: programmed cell death 6-interacting protein-like isoform X1

GO: NA

KEGG:

id description
K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218473.1 True 3232 mRNA 0.49 18 13228815 13240727
XM_043218474.1 False 3217 mRNA 0.50 18 13228815 13240727

Neighbor

gene id symbol gene type direction distance location
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding upstream 1160 13210147 ~ 13227655 (+)
clasp2 clasp2,LOC107669402,LOC107696541 coding upstream 19659 13168463 ~ 13209156 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding upstream 61382 13156264 ~ 13167433 (+)
LOC122324110 crtap,LOC107593591,LOC107706152,LOC107670137,LOC107696527,LOC107591617,LOC107742876 coding upstream 85849 13139261 ~ 13142966 (+)
si:dkey-166k12.1 si:dkey-166k12.1,LOC107706180,LOC107593577,LOC107670044 coding upstream 114734 13104681 ~ 13114081 (+)
arpp21 arpp21,LOC107593556,LOC107706187,LOC107669332,LOC107742849,LOC107696582 coding downstream 4571 13245298 ~ 13255979 (+)
fabp3 LOC107669374,LOC107593560,LOC107591627,LOC107696578,LOC107742844 coding downstream 33295 13274022 ~ 13276574 (+)
snrnp40 snrnp40,LOC107593559,LOC107591625,LOC107696518 coding downstream 38804 13279531 ~ 13283732 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding downstream 43934 13284661 ~ 13289734 (+)
pum1 LOC107706192,LOC107593563,LOC107591628,LOC107742842,LOC107696544,LOC107697057 coding downstream 50570 13291297 ~ 13307428 (+)
G132549 NA non-coding upstream 102198 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 104849 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 125890 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 363220 12786644 ~ 12865595 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 270881 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 272295 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 314284 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 320440 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 606055 13846782 ~ 13848115 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 202789 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 803737 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1115918 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1704934 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 2810719 10415640 ~ 10418096 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 68700 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1546817 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1593874 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1837727 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 2068000 15308727 ~ 15313877 (+)

Expression


Co-expression Network