ubp1 (ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855)


Basic Information

Item Value
gene id ubp1
gene name ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13210147 ~ 13227655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218475.1
TTGTTTGGAAGCCGAGAGTGACTACGACGCGTCCGAGCGCTAGCCGTGGAGACGATGACGACAGATCCTCGCAAGCCGATTGGTTGAGCGCGGCTCGCAGAGCGACGTGATTGGCTGACAGATTCCAGACCCGGATCCCTGCTGCGGCTCTCTCGCGTTTGGGGTTTGAATGGTGGCAGACAGAGGGCCGCGTCCGTGTGCGGTGATCTTTGGCCTCTTCCGACAGAGCAAGCGGGCGGGTCACCACGATGAAATTAGGCGAACGTTTTCGGAGAACATCGAGCGTAAAGGCACCGCGCTGCGTGTAGGATTAGACGAAAGCGTGctgagcgagcgagcgagctcTGCCAACCCAGTTACTCGAGCGGACATTGCGTGTGAATGCGGTGACAGTCAACAGCGTCCTCCCACCCTGCTTTATATAATGGAAGATCGCATGCAGATATGATGTGCTGCTGATGTGCACGGCGCGACATACGGGAGCTGGAAACGGATAATACACGAGGAGGTGTCGCGTGGAGGTTCGAGTTGACTTCGCGACATCCCGAGACTGTTATTTCTCGCCTGCGTTACTGTGAAACTCAAGCAATGGCGAGGCACACGGCGGTCGGGGCTAGAGCCGTTCGCCCTGCTTTCAACAGCTAGCCTTCCCGCGGGTGGCCACCTAACCAGCTCTAGTAGGACTAGCCGACTCCTGCGGCAACGCGAGCTCCGCGCAGGTGCTGTCTGTACGAGGCGAAGCTGGCGGCGCTCCGGTTAGAGTCGGAGGAGAAGGATCTGGGCGCCATGGCGTGGGTGCTGAAGATGGACGATGCTACCATCGAGTCTGGGCTTGTGCACGACTTCGATGCCAGTTTGTCTGGCATCGGCCAGGAGCTCGGGGCTGGCGCGTACAGCATGAGTGACGTGTTGGCTCTGCCCATCTTTAAGCAGGAAGATGTTAGCGTTCCTGTGGAGTCCGACACCAAGAATCCTCCGTTTCAGTACGTGCTGTGTGCCGCCACGTCCCCTGCTGTTAAACTGCACGAGGAGACGCTCACCTACCTAAACCAAGGCCAGTCGTATGAGATCCGATTGCTTGATAATAGGAAAATAGGGGAGATGCCCGAACTCAACAACAAGACTGTTAAGAGTATAGTTAGGGTGGTTTTCCATGACCGAAGGCTTCAGTACATGGAGCACCAGCAGCTGGAGGGCTGGAAATGGAATCGGCCTGGTGACCGCCTCCTCGACATCGATATCCCCATGTCAGTTGGAATCACTGAGCCCCGCACACACTCGTCACAGCTGAACGCCGCTGAGTTCCTGTGGGATCTCTCCAAGCGGGCGTCTGTGTTTGTACAGGTTCACTGCATCAGTACAGAGTTCACCCCGCGGAAACACGGCGGAGAGAAAGGAGTACCGTTCCGGATCCAGATTGATACTTTTAGACAAAATGAAAGCGGAGAGCACACCGAGCACCTGCACTCCGCCAGCTGCCAGATCAAAGTCTTTAAGCCAAAGGGAgcagacagaaaacaaaaaactgaccGAGAGAAGATGGAGAAAAAGACTGTGcaggaaaaagagaaatatcaACCTTCTTATGACACCACTATTTTGTCAGAGACTCGATTAGAGCCTGTGATTGAGGAGGCTGTAGAACATGAGCTAAAGAAATCCAGCAAGCGGACGCTTCCTGCAGACTGCGGCGATTCCATCGCCAAAAGCAAAAGAGGAAGTTGCTCTCCATGGCCAGATAATGCATACGTCAACCCCAACACAGCAGCTACACCGACCTTCACCTCCAGCACACACACCTACAGCACTAGCAGCACAGTACCAGACAGCGAATCGTCTTCACCTAACCATCAAGGGGATCTTGGTAGCCTCATGTCTATGGAGtctctGAGTCCCACAGCATCTATACAAGACGCACAGAAGTGGCTGCTTAAGAACAGATTTAACTCATACAGTCGTGTTTTCACCCATTTCTCAGGTTCTGATCTACTGAAATTAACTCGTGAGGATTTAGTCCAAATTTGTGGTGCAGCTGATGGAATCAGACTCTACAATGCACTTAAGTCAAgAGCTGTGCGTCCCAGACTTACCGTGTACGTGTCCCTGGAGGCGTCTCAGAGTGAGAGCCCTCTGCTGGAGAAACGTGGCCACAGTAAAAATGGCGAACACAGCAGTCCAACATCCATACCTGtttaccACGCTCTTTACCTAGAGGAGATGACCGCTTGCGAGCTAACGAGGAAAATCTCCAGTGTCTTGGCACTGCCGCTGTCCCACATCAACCAAGTCTACAAACAGGGGCCCACAGGGATACACATACTACTCAGTGACCAGATGGTTTATAACTTCCCAGATGAGAGCAGTTTCATTGTCAGCACAATACAAgATGACACCAGTGATGGTTTTCACCTGGTTCTGAAGTAGAGCTGCTGCAAGCAACATGAAGCAGAGTGTGGTGACATACATCTCGAGGCTCCATACTGCCATTCTTGAACATTGGACACGTTCCCTCCatcctcctctctcttcctttcctcatctctctctcgttcttCACGTCTCGCTCGTctagaggagagagagagatagccGGGGTTGGGCAGGGCCTCCTAACTGTTAGAATCTGACTTCAGTGTGTAAATTGTTTCATATTGAAAACACTTAAACTGATGCCAGTGTGTGCGAGCGGTGGGCTTTTAATTGTGCGTGCGAGTGCGTCTTTGAAGGTTGAATCGGGAGGGATGGAGGTGGGCAGAAACCACAAGGAAGCGGAGGAGAACTGCGACCACTTACTTCAGCATGGTGTTCGTGGGAGAATCTGAGCATCCTGTGCCGCCGTATGGCTACGCTCAGACTCTGTCCTCACTTTGCTAATTATGAACGTACAGTACTTACTTGAGTTTGTCTGCCTTTTGTCTGTGAGTTGTCAAGCGTATCGCTTCCTGCCCCTTCGGATTGGCCTGCAGACGCCATCACAAAACCCCTCAGTAGATAGTGATGACCTCTTTTTCAAATGTGGGGAAATGCGTCCTGACTTAGGCATGCGCGGGACGTCTTTATGTCTGTCTGGATGAAATAATTCCTTGAGTTTGAGCACGGTGCCCTGCAGCTAACATGAGGTTGTGAGACTCAAGTTTCGGCTGTATCCTACTCTCGTAGATGACCTTGTCAATCGTTTTCCAATTCCTCTCTCAAGACCAATCGTTTCTGGTGCCATTGTTTTAGATTCTGTTAGTTTCTTAGCATTTACTTTGTGCTTAGCGGGATGACTTTAAGCGTCAGCTGGTTCCACATGTTTAGAATTAAATGATGGTTTTTAGATTGTGATTGGCGTGCTTCGTATTCTCTGTGCCCGGTAACTGCGTACCTGCCCTATTATAGTAGCTCCTGGCACAGATTATAACACGATTATTGATAAATGTGCACAATCACAAGCAGCCATAAATTATATTTCCCATAATGCCTTTGCTTTCtattatcttaatttttttggcCGGTGCTTTTCTAAATGCACACATGGTTTACCGCCAGCTGCTCCAGTTAAACCTAGCCTGAGCCTGCGGTCAgcctgcctttttttttttttttttttttttttttttcttcttatctCAGTAGTCATGTATTGGGCAGCTGTGCTTTGGCATGTACTGTGCTTATTATTGCCACTTTATAGAGGAGCATGGTTGTGAGAATGACTCCTTTTAATtctcataataaaaaaaaaaatgaagaaaaaaaaaaaaaggaatgacCAAGTCTGCACTGAAACTGATACCACAGTGAAATGGATACTTTGCTGTTGTTGGATGCTCACTTAGACTTTTGGTGTACACGATGTTTCCAGGTTGAACAAATGATCCAAGTCTAAATCTATGAAGAGGTGTGTTCTCTTCCTTTGATCACCGGACTGTCCTCTGCGTTTCCGTGATGATAATCATGGTGCCCTCATGTCACTGTCTGTCAAAAGAAGCCTCTCTTCCATAGGGGGTGCTGAGATGTACACAATTAATGCCTGtaccagaaataaaaataattttcata
>XM_043218476.1
CGGCGTGACTCGACACGAGACTGCTCGGGTCGCTGTCCGTCGCTAGATTTTCAGGATTGATCGCGGGTTTCGCAGATAGCAATGCAATGCTGTTCTGGCAGCTGCACGCTGGGAGCTTTGAGAGTCGACAGCCCTACAGCTGCAGCAGCAACAACACACGTGACGTGTTGGCTCTGCCCATCTTTAAGCAGGAAGATGTTAGCGTTCCTGTGGAGTCCGACACCAAGAATCCTCCGTTTCAGTACGTGCTGTGTGCCGCCACGTCCCCTGCTGTTAAACTGCACGAGGAGACGCTCACCTACCTAAACCAAGGCCAGTCGTATGAGATCCGATTGCTTGATAATAGGAAAATAGGGGAGATGCCCGAACTCAACAACAAGACTGTTAAGAGTATAGTTAGGGTGGTTTTCCATGACCGAAGGCTTCAGTACATGGAGCACCAGCAGCTGGAGGGCTGGAAATGGAATCGGCCTGGTGACCGCCTCCTCGACATCGATATCCCCATGTCAGTTGGAATCACTGAGCCCCGCACACACTCGTCACAGCTGAACGCCGCTGAGTTCCTGTGGGATCTCTCCAAGCGGGCGTCTGTGTTTGTACAGGTTCACTGCATCAGTACAGAGTTCACCCCGCGGAAACACGGCGGAGAGAAAGGAGTACCGTTCCGGATCCAGATTGATACTTTTAGACAAAATGAAAGCGGAGAGCACACCGAGCACCTGCACTCCGCCAGCTGCCAGATCAAAGTCTTTAAGCCAAAGGGAgcagacagaaaacaaaaaactgaccGAGAGAAGATGGAGAAAAAGACTGTGcaggaaaaagagaaatatcaACCTTCTTATGACACCACTATTTTGTCAGAGACTCGATTAGAGCCTGTGATTGAGGAGGCTGTAGAACATGAGCTAAAGAAATCCAGCAAGCGGACGCTTCCTGCAGACTGCGGCGATTCCATCGCCAAAAGCAAAAGAGGAAGTTGCTCTCCATGGCCAGATAATGCATACGTCAACCCCAACACAGCAGCTACACCGACCTTCACCTCCAGCACACACACCTACAGCACTAGCAGCACAGTACCAGACAGCGAATCGTCTTCACCTAACCATCAAGGGGATCTTGGTAGCCTCATGTCTATGGAGtctctGAGTCCCACAGCATCTATACAAGACGCACAGAAGTGGCTGCTTAAGAACAGATTTAACTCATACAGTCGTGTTTTCACCCATTTCTCAGGTTCTGATCTACTGAAATTAACTCGTGAGGATTTAGTCCAAATTTGTGGTGCAGCTGATGGAATCAGACTCTACAATGCACTTAAGTCAAgAGCTGTGCGTCCCAGACTTACCGTGTACGTGTCCCTGGAGGCGTCTCAGAGTGAGAGCCCTCTGCTGGAGAAACGTGGCCACAGTAAAAATGGCGAACACAGCAGTCCAACATCCATACCTGtttaccACGCTCTTTACCTAGAGGAGATGACCGCTTGCGAGCTAACGAGGAAAATCTCCAGTGTCTTGGCACTGCCGCTGTCCCACATCAACCAAGTCTACAAACAGGGGCCCACAGGGATACACATACTACTCAGTGACCAGATGGTTTATAACTTCCCAGATGAGAGCAGTTTCATTGTCAGCACAATACAAgATGACACCAGTGATGGTTTTCACCTGGTTCTGAAGTAGAGCTGCTGCAAGCAACATGAAGCAGAGTGTGGTGACATACATCTCGAGGCTCCATACTGCCATTCTTGAACATTGGACACGTTCCCTCCatcctcctctctcttcctttcctcatctctctctcgttcttCACGTCTCGCTCGTctagaggagagagagagatagccGGGGTTGGGCAGGGCCTCCTAACTGTTAGAATCTGACTTCAGTGTGTAAATTGTTTCATATTGAAAACACTTAAACTGATGCCAGTGTGTGCGAGCGGTGGGCTTTTAATTGTGCGTGCGAGTGCGTCTTTGAAGGTTGAATCGGGAGGGATGGAGGTGGGCAGAAACCACAAGGAAGCGGAGGAGAACTGCGACCACTTACTTCAGCATGGTGTTCGTGGGAGAATCTGAGCATCCTGTGCCGCCGTATGGCTACGCTCAGACTCTGTCCTCACTTTGCTAATTATGAACGTACAGTACTTACTTGAGTTTGTCTGCCTTTTGTCTGTGAGTTGTCAAGCGTATCGCTTCCTGCCCCTTCGGATTGGCCTGCAGACGCCATCACAAAACCCCTCAGTAGATAGTGATGACCTCTTTTTCAAATGTGGGGAAATGCGTCCTGACTTAGGCATGCGCGGGACGTCTTTATGTCTGTCTGGATGAAATAATTCCTTGAGTTTGAGCACGGTGCCCTGCAGCTAACATGAGGTTGTGAGACTCAAGTTTCGGCTGTATCCTACTCTCGTAGATGACCTTGTCAATCGTTTTCCAATTCCTCTCTCAAGACCAATCGTTTCTGGTGCCATTGTTTTAGATTCTGTTAGTTTCTTAGCATTTACTTTGTGCTTAGCGGGATGACTTTAAGCGTCAGCTGGTTCCACATGTTTAGAATTAAATGATGGTTTTTAGATTGTGATTGGCGTGCTTCGTATTCTCTGTGCCCGGTAACTGCGTACCTGCCCTATTATAGTAGCTCCTGGCACAGATTATAACACGATTATTGATAAATGTGCACAATCACAAGCAGCCATAAATTATATTTCCCATAATGCCTTTGCTTTCtattatcttaatttttttggcCGGTGCTTTTCTAAATGCACACATGGTTTACCGCCAGCTGCTCCAGTTAAACCTAGCCTGAGCCTGCGGTCAgcctgcctttttttttttttttttttttttttttttcttcttatctCAGTAGTCATGTATTGGGCAGCTGTGCTTTGGCATGTACTGTGCTTATTATTGCCACTTTATAGAGGAGCATGGTTGTGAGAATGACTCCTTTTAATtctcataataaaaaaaaaaatgaagaaaaaaaaaaaaaggaatgacCAAGTCTGCACTGAAACTGATACCACAGTGAAATGGATACTTTGCTGTTGTTGGATGCTCACTTAGACTTTTGGTGTACACGATGTTTCCAGGTTGAACAAATGATCCAAGTCTAAATCTATGAAGAGGTGTGTTCTCTTCCTTTGATCACCGGACTGTCCTCTGCGTTTCCGTGATGATAATCATGGTGCCCTCATGTCACTGTCTGTCAAAAGAAGCCTCTCTTCCATAGGGGGTGCTGAGATGTACACAATTAATGCCTGtaccagaaataaaaataattttcata

Function

symbol description
ubp1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human UBP1 (upstream binding protein 1).

NR:

description
PREDICTED: upstream-binding protein 1-like isoform X2

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218475.1 True 4044 mRNA 0.49 16 13211833 13227655
XM_043218476.1 False 3302 mRNA 0.47 16 13210147 13227655

Neighbor

gene id symbol gene type direction distance location
clasp2 clasp2,LOC107669402,LOC107696541 coding upstream 991 13168463 ~ 13209156 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding upstream 42714 13156264 ~ 13167433 (+)
LOC122324110 crtap,LOC107593591,LOC107706152,LOC107670137,LOC107696527,LOC107591617,LOC107742876 coding upstream 67181 13139261 ~ 13142966 (+)
si:dkey-166k12.1 si:dkey-166k12.1,LOC107706180,LOC107593577,LOC107670044 coding upstream 96066 13104681 ~ 13114081 (+)
pogza NA coding upstream 111110 13090763 ~ 13099037 (+)
LOC122324206 pdcd6ip,LOC107669307,LOC107593555,LOC107706184,LOC107742851,LOC107591619,LOC107696546 coding downstream 1160 13228815 ~ 13240727 (+)
arpp21 arpp21,LOC107593556,LOC107706187,LOC107669332,LOC107742849,LOC107696582 coding downstream 17643 13245298 ~ 13255979 (+)
fabp3 LOC107669374,LOC107593560,LOC107591627,LOC107696578,LOC107742844 coding downstream 46367 13274022 ~ 13276574 (+)
snrnp40 snrnp40,LOC107593559,LOC107591625,LOC107696518 coding downstream 51876 13279531 ~ 13283732 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding downstream 57006 13284661 ~ 13289734 (+)
G132549 NA non-coding upstream 83530 13125877 ~ 13126617 (+)
G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding upstream 86181 13118716 ~ 13123966 (+)
G132541 psmb4,LOC107593590,LOC107669568,LOC107706179 non-coding upstream 107222 13101949 ~ 13102925 (+)
G132498 LOC107593576,LOC107731729,LOC107706171,LOC107696598 non-coding upstream 344552 12786644 ~ 12865595 (+)
G132755 klhl43,LOC107706211,LOC107589442,LOC107742826,LOC107696549,LOC107591641 non-coding downstream 283953 13511608 ~ 13512971 (+)
G132754 klhl43,LOC107589442,LOC107706211,LOC107742826,LOC107591641,LOC107696549,LOC108426671 non-coding downstream 285367 13513022 ~ 13513896 (+)
G132773 NA non-coding downstream 327356 13555011 ~ 13556679 (+)
G132774 NA non-coding downstream 333512 13561167 ~ 13561445 (+)
G132884 NA non-coding downstream 619127 13846782 ~ 13848115 (+)
jtb jtb,LOC107706175,LOC107591609,LOC107731414,LOC107593543 other upstream 184121 13021417 ~ 13026026 (+)
gngt1 gngt1,LOC103023645,LOC108257427,LOC107085869 other upstream 785069 12423290 ~ 12425078 (+)
LOC122323774 NA other upstream 1097250 12111279 ~ 12112897 (+)
LOC122323782 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 1686266 11522229 ~ 11523881 (+)
zgc:91910 zn706,LOC107556412,LOC107574718,LOC107710523,LOC107670289,LOC104962755,LOC108425704 other upstream 2792051 10415640 ~ 10418096 (+)
sdc3 LOC107697058,LOC107696563,LOC107593566,LOC107742841,LOC107706193,LOC107591629 other downstream 81772 13309427 ~ 13336749 (+)
G133066 ext1c,LOC107654729,LOC107706241,LOC107592050,LOC107754264,LOC107592945,LOC107688378 other downstream 1559889 14787544 ~ 15212430 (+)
LOC122323257 tpmt,tpmt.1,LOC107591974,LOC107688424 other downstream 1606946 14834601 ~ 14837969 (+)
LOC122323518 LOC107654743,LOC107688368,LOC107602377,LOC108413484,LOC107706254,LOC107710329 other downstream 1850799 15078454 ~ 15192566 (+)
LOC122323314 LOC107602378,LOC107591987,LOC107706255,LOC107710332,LOC107688367,LOC107654747 other downstream 2081072 15308727 ~ 15313877 (+)

Expression


Co-expression Network