CI01000001_06981183_06981774 (RPL22)


Basic Information

Item Value
gene id CI01000001_06981183_06981774
gene name RPL22
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6981183 ~ 6981804 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06981183_06981774.mRNA
AGGAAGCAGCAGAGCTCTAAAGGTGGAAAGAAGAAGAAGCAGGTCCTGAAGTTCACGCTGGACTGCACGCATCCCGTTGAAGATGGTATTATGGATGCTGCCAACTTTGAGCAGTTCCTACAGGAGCGCATCAAAGTCAACGGTAAAGCAGGAAACCTGGGAGGTGGAGTTATCACCATTGAAAGAAGCAAGAGCAAAATCACAGTTTCTTCTGAGGTGCCCTTCTCCAAAAGGTACCTGAAGTATCTCACAAAGAAATACTTAAAGAAGAACAATCTCAGAGACTGGTTGCGTGTTGTAGCTAACACTAAAGAAAGCTATGAACTTCGCTACTTCCAGATCAACCAAGATGAGGAAGAAGAGGAGGATGAGGATTAAATTCTTGTTTTTTTTTTTTTGTACATTTAA

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06981183_06981774.mRNA True 408 mRNA 0.42 3 6981183 6981804

Neighbor

gene id symbol gene type direction distance location
CI01000001_06960133_06963752 ICMT coding upstream 16753 6960133 ~ 6964430 (+)
CI01000001_06956478_06959048 NA coding upstream 21563 6955499 ~ 6959620 (+)
CI01000001_06948672_06949034 NA coding upstream 32149 6948586 ~ 6949034 (+)
CI01000001_06939316_06939879 NA coding upstream 40478 6939233 ~ 6940705 (+)
CI01000001_06921000_06929478 TAS1R1 coding upstream 50824 6921000 ~ 6930359 (+)
CI01000001_06996957_07040074 NA coding downstream 15153 6996957 ~ 7040081 (+)
CI01000001_07045345_07052918 IGSF21B, IGSF21 coding downstream 63541 7045345 ~ 7052970 (+)
CI01000001_07056922_07065716 DHRS3, DHRS3A coding downstream 75118 7056922 ~ 7066543 (+)
CI01000001_07208833_07215412 NA coding downstream 226479 7208283 ~ 7215507 (+)
CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding downstream 249754 7231558 ~ 7266902 (+)
G16937 NA non-coding upstream 35032 6936142 ~ 6946151 (+)
CI01000001_06893068_06917387 IFFO2A non-coding upstream 62921 6893068 ~ 6917660 (+)
G16317 NA non-coding upstream 180802 6800168 ~ 6800381 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding upstream 248258 6717159 ~ 6747744 (+)
G16284 NA non-coding upstream 307672 6672182 ~ 6673511 (+)
G16977 NA non-coding downstream 109949 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 170290 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 297439 7279243 ~ 7284904 (+)
G17057 NA non-coding downstream 334860 7316664 ~ 7319030 (+)
G17061 NA non-coding downstream 341482 7323286 ~ 7323615 (+)
G15995 NA other upstream 1266232 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1691227 5279837 ~ 5287698 (+)
G15794 NA other upstream 1916479 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3359732 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5310179 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 550768 7531541 ~ 7540586 (+)
G17234 NA other downstream 1050320 8032124 ~ 8032483 (+)
G17353 NA other downstream 2234218 9216022 ~ 9228859 (+)
G17354 NA other downstream 2252659 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2436524 9435836 ~ 9436373 (+)

Expression


Co-expression Network