sla1a (LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725)


Basic Information

Item Value
gene id sla1a
gene name LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10374711 ~ 10378838 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218496.1
TGCCAGCGTTGCAAACTGTacttatttgcattaaaaatggtttGCTATACcgtatattgcattttatttgcattgagAATGTGTAGTAATTTCTGTTGGTGCACATTGACAGGACGGAGGAAGACGAGGTTAGGGAACTCTTCCTCATTTTACCAGAGGAAGTATGTGGCCGTGTGCTGTTTTCAGTAGACCAGTGCTCAGTTTAGATAAGCCTGCAGAGCAGTGCAGGCCACTCACAACACAACTGCTCTTACTGCTGGCCTTCGGTCTGAGACCAGGGCAATATTTCTTTACTCTGAACCACCTGCTTCAACTTTATTGGGAGCAGCCAGCCAGAACTGAAGCTTTGCCCTTTGGAGGAAACATGGATATTTAACTGCTTCAAGTGAGAGGATCTGTAGAGCTGCGGCCTCTAAACGGCCATTATGGGCAATGTGATGAGGCAGGAAAAGACAAACCCAGAGCCCAACAACTCTGACACCATGTTTAAAGACTGTGACAGTCTTGTGGTGCTCAGTGATTACCCATGTCGAGACATTAGTGAACCCATCTTTGGGATAGGGGACAAACTCAAAGGTCTCTCCGAAGATGGTTGCTGGTGGAAAGTCCGTTCTCTTCAAACAGGAACTGAGAATTACATTCCAAGTAATTATGTGGCAAAGGTTTATCATGGatGGCTGTTTGAGGGGATTAGCAGACAGAAGGCAGAAGAGCTTTTGTTATTGCCTGGTAACAGTGTTGGATCATTCCTTATTAGAGAGAGCCCGAGAGAAAGAGGTGTATATTCTCTCTCTGTGAGACACAGAACCATAAAGCACTATAAAATATTTCGTCTGACTAACAGCTGGTACTACGTCTCCCCGCGGCTTACCTTTCAGTGTCTGGAGGACATGGTCAATCACTACTCTGACTCATCGGACGGTATATGTTGTGTTCTCAGCGCTCCGTGTCTGACTCTGTCCACTTCTGCCCCGAGCACAACCCAGGAAGCCCCTCCTGTGGTAATGCGCCGTAACTTGGATTGGAAGAAAGTGAATAAGTCACAGCTGATGAGCCCGAGCGCACTGGATAATGCGGACAGCAAAGATGGCATGATGAGCTACGGCGTGAGGAGCAGCATAGCCTCATATCTGTCCTTAACATCAGTACCTGTGCTAGAGAACGCCAAAGACCGAAAGAAGAAGAGCAAGTCTGTCTATGTGATGCCCGACCACAGTAACATAAATGAAGATGAGGACTATTAGCTCACGAGCGTAGACttttaatcttttcattttaaccaACACATTGCAATGGACTGTAATATTTCTGCACTGAGTAAAGCGACCCATTCACATACATGTCCATTTATATGGAAGCCATTTCTGCGTTTACATATCCTAattttatatgtttacatttcgcaattctgactctctttttctctgaattCGGGGTTAAGATTCTTCGTTGTTTGTGCCATggaataaaaatttaaatagtaactgcacttttgcatttttctcACAAATTTCGACTTTTTTCTAGCagttgtaaattaaaatttgcaattgccttttttttttttcagaattataaGTTCATGTGTCATAATTCTGAATTCAGTCAAAATTGtgagtttagaaaaaaaaacatttacttttttttcatataatttttttttttcattttcattctgtaGTTTCAATTTTCAAGTAGTGTTTCACCCTAAAAtcaaattggaaaaaaaaaaatctcatttattgtaatgtttagaTGCTTTAATTTtagggatttttttatttcagtgattctTAAGCCTGGAATACACTACGCAATTTTTAGTTTATGATGCCCAATTTTCAAGTAGTGTATGATGCCTAGTGTTTTGAAAATCTGTTCAAAATATCCGTATGTTTCACTATTAAGCTTTAAAGTAAATCAAGAAAAATGTTGACATGCTACTTTTTTCTTGATTTACTTTATATAGCCTAGCACCAAAGATGAgcacgcatttttttttttttttaattcttcctTTAACTTTACTGTGAAGCACGGTTTCTTACTTAAAAACACTGAAgccaaaatgttaataaataatgcagcaaAATGTTTAATAGCGAATGTTACAGGAACACGTTTTATAGCAACTTAACGTTTTATGAACATTTGTTCATGAGTGTAAAGCCATAAGCACTTATAATTTAATGTACATATGCCTTTATCAAAGAACCATTGCTTTCTTTCTTGAAAATATTATGTGGCACGTTTAATTAAAGGAATGAGAGATGGGACACTTTCTCCTATACTTTAATA

Function

NR:

description
src-like-adapter isoform X2

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218496.1 True 2298 mRNA 0.38 8 10374711 10378838

Neighbor

gene id symbol gene type direction distance location
c19h18orf21 LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336 coding downstream 349060 10012408 ~ 10025651 (-)
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding downstream 362952 10007041 ~ 10011759 (-)
otud6b otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366 coding downstream 459652 9912365 ~ 9915059 (-)
lrrc69 LOC107724328,LOC107556328,LOC107653817,LOC107702067 coding downstream 462969 9909104 ~ 9911742 (-)
trib1 trib1,LOC107565192,LOC107724318,LOC107702074,LOC107710180,LOC107556392,LOC107653840 coding downstream 735729 9631241 ~ 9638982 (-)
ndrg1a ndrg1a,LOC107710403,LOC107670279,LOC107724345,LOC107653857,LOC107556406 coding upstream 13886 10392724 ~ 10402213 (-)
si:rp71-45k5.2 LOC107724323,LOC107670287,LOC107574714 coding upstream 31239 10410077 ~ 10411619 (-)
psma2b si:rp71-45k5.4,psma2,LOC107724313,LOC103023870,LOC108425697,LOC108440756,LOC107686300,LOC107592434 coding upstream 34843 10413681 ~ 10416026 (-)
bmp8a LOC107724317,LOC107564489,LOC107556408,LOC107710496,LOC107670293,LOC107653863 coding upstream 40190 10419028 ~ 10426439 (-)
macf1a macf1a,macf1,LOC106570016,LOC107670270,LOC107653864,LOC107724266,LOC107564497 coding upstream 49077 10427915 ~ 10578168 (-)
G132128 NA non-coding downstream 119473 10198573 ~ 10255238 (-)
LOC122323594 NA non-coding downstream 428997 9942136 ~ 9945714 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding downstream 484188 9877452 ~ 9890523 (-)
LOC122323520 NA non-coding downstream 600248 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 726687 9647549 ~ 9648024 (-)
LOC122323417 NA non-coding upstream 401626 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 792188 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 1105965 11484803 ~ 11487989 (-)
G132241 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 non-coding upstream 1129879 11508717 ~ 11565630 (-)
LOC122323791 NA non-coding upstream 1134293 11513131 ~ 11515458 (-)
ctnnal1 NA other downstream 12184 10315621 ~ 10362527 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other downstream 62775 10291272 ~ 10311936 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other downstream 390406 9929866 ~ 9984305 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 710252 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 1065359 9308720 ~ 9309352 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 361536 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 791432 11170270 ~ 11170913 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other upstream 1331085 11709923 ~ 11756438 (-)
G132292 NA other upstream 1453335 11832173 ~ 11832907 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 2056941 12435779 ~ 12438085 (-)

Expression


Co-expression Network