LOC122323349


Basic Information

Item Value
gene id LOC122323349
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2986542 ~ 3045884 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006246993.1
tgaaagacatcgtcaaaATACTCCAtgtgccatcagtggttcaaacaGTATTTTATGAAGCAACTGGAATACTTTTTGcacacaagaaaaacaaaatactgaACAAAAGACACATTTGGTGTACATGATTAAtaagaaaattgtaatattttattaaatatatattatgtagtaTATTGTAACACCACGCCAGCGGAGGGAGCCGTCACCGAAGTACTGACTCGGATCCACTTCCTCTGcaatcacttcctgtttggacAGCATAAAGCCAGAGCTCACAAACTACTACCAGCTCACCCTGCTTTACTAAGCATTCTCATTGTCCATTCTGGCTGCTGTTtgtgtatgatctctgcctgtttaagaaaaaattattattattcagaatgTGTCGTCCATGTGGCCTGCTGTGCATGAGACATGATGCAATGGTGGCTCAAGACCAAGGTGTTTTCCCAGAGGGTTGGGGTTGTGTTGTCATGTAACGATAACGAAGGACACCACTCTGGATCTGAGGGAAGGCCGTCTAGAGAATCTGGAGCTGTGTAACCCTCATGAATGATGCATCCTGCTGCCTTCTGATAACAGACCTGTTGTGGATCCGGCAGAGAGAGAACATATTAAAGTTAAAGCACCTGGTGGTCAGGAGCTCTTTCATGtttcttcagaaatccttctaatattataattatcaaacattattattatcaatatttcaaatgcatttcttccagattatttgatgaataaaaggaTCGAAGgcattgtgtttttcagttctACCTGCCTGTTTATTAATTACCTCATTTGTTCTCTGTTCATTTAAGCCAGTATTTCTCAGTTCCTGTGTCttgtatttatgtaatgtgGTGCATGCTTTGTTGTCTTTGTTCTGCTCCTCGATTCTCTAATAACTTagtttaaaactgtttatagGGTTCCCCTTCGTTGTGCGTTTAACTCAGCATGGCAACACATGacaactggagtaatgatgcaaaaaaacacaaagaatgcTTGCAGGATTGGTGAGCGAAgagaaaaagcataaataaataaaatctccCTATTCAAGGAGGTCAAAA
>XR_006246994.1
tgaaagacatcgtcaaaATACTCCAtgtgccatcagtggttcaaacaGTATTTTATGAAGCAACTGGAATACTTTTTGcacacaagaaaaacaaaatactgaACAAAAGACACATTTGGTGTACATGATTAAtaagaaaattgtaatattttattaaatatatattatgtagtaTATTGTAACACCACGCCAGCGGAGGGAGCCGTCACCGAAGTACTGACTCGGATCCACTTCCTCTGcaatcacttcctgtttggacAGCATAAAGCCAGAGCTCACAAACTACTACCAGCTCACCCTGCTTTACTAAGCATTCTCATTGTCCATTCTGGCTGCTGTTtgtgtatgatctctgcctgtttaagaaaaaattattattattcagaatgTGTCGTCCATGTGGCCTGCTGTGCATGAGACATGATGCAATGGTGGCTCAAGACCAAGGTGTTTTCCCAGAGGGTTGGGGTTGTGTTGTCATGTAACGATAACGAAGGACACCACTCTGGATCTGAGGGAAGGCCGTCTAGAGAATCTGGAGGTTAAGGCAAGTACAGTGGTACCTTCATGGGACCCGGCAGTGGTTCTGGAGGGCTTGTGCAATGCCCCCTTCAAACCCATTGAGGAGGTTTCAGACAAGTTCAACATTTCTAAAGGAATTTATACTATGTAGTTAATTGCttgtgatttgttgttgttatgttttattatta
>XR_006246995.1
tgaaagacatcgtcaaaATACTCCAtgtgccatcagtggttcaaacaGTATTTTATGAAGCAACTGGAATACTTTTTGcacacaagaaaaacaaaatactgaACAAAAGACACATTTGGTGTACATGATTAAtaagaaaattgtaatattttattaaatatatattatgtagtaTATTGTAACACCACGCCAGCGGAGGGAGCCGTCACCGAAGTACTGACTCGGATCCACTTCCTCTGcaatcacttcctgtttggacAGCATAAAGCCAGAGCTCACAAACTACTACCAGCTCACCCTGCTTTACTAAGCATTCTCATTGTCCATTCTGGCTGCTGTTtgtgtatgatctctgcctgtttaagaaaaaattattattattcagaatgTGTCGTCCATGTGGCCTGCTGTGCATGAGACATGATGCAATGGTGGCTCAAGACCAAGGTGTTTTCCCAGAGGGTTGGGGTTGTGTTGTCATGTAACGATAACGAAGGACACCACTCTGGATCTGAGGGAAGGCCGTCTAGAGAATCTGGAGGAGGGATGTTTTCCACCAAAGATGTGTTCATCGTCTTGTCAAGTCACCTGCTTTGATGTTCCAGGCATGCAAACTCTGTGGGTGTGACGCTGACTGCAGTTTCTTCTCCTATTGGTAGTTAATGCTTCACATCTCGACTTATTTACATAAACTCAAACTTTTCTTCAAAACTTCAATGCATTAAAGTGGCAGTGCAGTGCAAACTGCATGCTGtttgaaatttatttaaatgtatacatttatattgaatGCAGTGGTGATGCTCACACACACTTGTGGTGAGGAAGTTGca

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006246993.1 True 1085 lncRNA 0.39 3 2986542 2998598
XR_006246994.1 False 713 lncRNA 0.41 3 2986542 2987665
XR_006246995.1 False 833 lncRNA 0.41 3 2986542 3045884

Neighbor

gene id symbol gene type direction distance location
edn2 NA coding upstream 64523 2919368 ~ 2922019 (+)
hivep3a hivep3a,LOC107708727,LOC107687396,LOC107689544,LOC107732924,LOC107595896,LOC107569862,LOC107732908 coding upstream 71833 2894544 ~ 2914709 (+)
ptprua ptprua,LOC107732911,LOC108272369 coding upstream 421986 2380621 ~ 2564556 (+)
gmeb1 gmeb1,LOC107556889,LOC107595901,LOC107708700 coding upstream 645419 2331733 ~ 2341123 (+)
LOC122324256 NA coding upstream 656266 2330141 ~ 2330276 (+)
LOC122323611 NA coding downstream 104193 3150077 ~ 3163642 (+)
tbxta ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085 coding downstream 440618 3486502 ~ 3491224 (+)
nr0b2b NA coding downstream 458225 3504109 ~ 3508711 (+)
paqr7a LOC107567589,LOC107754930,LOC107689535 coding downstream 521130 3567014 ~ 3570984 (+)
trnau1apa LOC107754918,LOC107689564,LOC107567591 coding downstream 532094 3577978 ~ 3582390 (+)
G130022 NA non-coding upstream 52095 2930427 ~ 2934447 (+)
G130020 NA non-coding upstream 59038 2927288 ~ 2927504 (+)
G130017 NA non-coding upstream 63922 2922165 ~ 2922620 (+)
G130015 NA non-coding upstream 70131 2915945 ~ 2916411 (+)
G129979 NA non-coding upstream 200715 2754024 ~ 2785827 (+)
G130079 NA non-coding downstream 57060 3102944 ~ 3103587 (+)
G130082 LOC103461248,LOC107835431,LOC106945151 non-coding downstream 103250 3149134 ~ 3149771 (+)
LOC122324184 NA non-coding downstream 307135 3353019 ~ 3368417 (+)
G130141 NA non-coding downstream 393829 3439713 ~ 3440187 (+)
G130150 NA non-coding downstream 419355 3465239 ~ 3541394 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other upstream 8126 2959593 ~ 2978416 (+)
serinc2 serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775 other upstream 92941 2889623 ~ 2893601 (+)
LOC122323290 NA other upstream 98914 2885413 ~ 2887628 (+)
G129993 NA other upstream 200194 2785925 ~ 2786348 (+)
ppp1r8a ppp1r8a,LOC107690919,LOC107732917,LOC107708698,LOC108441741,LOC108272406,LOC105903676 other upstream 845210 2134652 ~ 2141332 (+)
G130077 NA other downstream 47183 3093067 ~ 3093714 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other downstream 526378 3572262 ~ 3576193 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other downstream 713983 3759867 ~ 3760985 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other downstream 1198884 4244768 ~ 4259085 (+)
ptpn2b ptpn2b,LOC107738314,LOC107552315,LOC107672871,LOC107748370,LOC107666587,LOC108438851 other downstream 1348701 4394585 ~ 4406579 (+)

Expression


Co-expression Network