LOC122323417


Basic Information

Item Value
gene id LOC122323417
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10780464 ~ 10783613 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247002.1
TCGCCATCCAGCTCGGCCCTTTCCAGTAGTACCACTTTATACTGTTATACCGTATCACATTGGAGCTTCCAGAATAGTATATCCCATTGAGATTGGAAGGACCACAAGCTTCGAACCACCACCCTGCAGAGATAAAAGACAGaccatccaagatgcagatgagtttgtttcttcatcgacACAAGTTTGGAGAAATTTACCAAAGGATCCCCTGAGTTCATTGGTGCCGTAAGAAGTTcaaatgtgttatatattaatCCAGACTTCTCCAGCCACcattattatgatatatatatttttattttatagccagactctcattctgacggcacccatttactgcagagaaTCCATTAGCGAGCAAGTGGTGCTAAACTTCTCCTACAGAAAAACTGATCTACATTTTGGAttgcctgaggGAGGAATCGCGAACACACTGTGCCAGAGAAAGGACCACACAGCTAGAAACTGCAGGAGATTGTGTtggcatcaaaacatttttgcaccATAGGTTGCTTGGCTGGTTAATCCCAAATGGGCCCAAAACCCTCGAGACCATGCCAGGATTCTCAGCGCGCTAATAAACGCACACTTACCATATGAGGTAAACTAGAAAACAAACGTGGGATTTGGCAAGTTCTAGTTCAGCAATTTCTCTACCTGtttacacgcacacaaacacaatctgATACCATTGCTACAACACTCTCGCATTCTATAGCTGtattccaaatcatttattttgagttaaatttaatatttctggTTCTGGTTCATTCGCTGTATAAGTATGCCCACAAGCAATACTGCATGTTTAATTGCATCCCTTAAGAGAGGTGTGAGATTTGTTTAACTCGGCAGTTTTCTGGCAAAGCCTCATGCTTGAAATGGTTTGCCCTGTTTCTCTTTTGTAGGCAGATCTGCTCCTGGGATCGGCAGACCATAAGCAATAACGATGCTGGGAGAAATGCCGGTTTACCCTAAATGTAGCTCATCATTTTGACTTGTGTACAAAATCACACAAGCGTCTCCTATCCCCGGAAAATGACAAAGACaagccaacaaaaaaaaaaattaaatgtatcaatAATGTTCTAAAAATGTGATTCACATTGCAAATCTAAATGCAAATCAAGCCTTAATCAGATTCTGTGCTCTGAACAATTATATACTGAACATATTCTACTTAAATGACACa

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247002.1 True 1198 lncRNA 0.40 3 10780464 10783613

Neighbor

gene id symbol gene type direction distance location
col8a2 col8a2,LOC107564494,LOC107710560,LOC107724334,LOC107565043 coding downstream 52457 10637428 ~ 10728007 (-)
ptp4a2b LOC107564493,LOC107670276,LOC107653869,LOC105012508,LOC103042327,LOC108257240,LOC107710550 coding downstream 143573 10617563 ~ 10636891 (-)
anln LOC107724311,LOC107670283 coding downstream 164455 10604697 ~ 10616009 (-)
ak2 LOC107653866,LOC107670285,LOC107564491,LOC107710539,LOC107724312,LOC107556372 coding downstream 176695 10600551 ~ 10603769 (-)
rnf19b rnf19b,LOC107710473,LOC107724316,LOC107670272 coding downstream 180751 10582745 ~ 10599713 (-)
csmd2 csmd2,LOC107698986,LOC107663732 coding upstream 92824 10876437 ~ 11118281 (-)
LOC122323869 NA coding upstream 706514 11490127 ~ 11496613 (-)
LOC122323775 fam206a,LOC107670282,LOC107556369,LOC107556344,LOC107710376 coding upstream 800437 11584050 ~ 11586071 (-)
efcab1 efcab1 coding upstream 1405669 12189282 ~ 12190901 (-)
LOC122323777 NA coding upstream 1407425 12191038 ~ 12192305 (-)
G132128 NA non-coding downstream 525226 10198573 ~ 10255238 (-)
LOC122323594 NA non-coding downstream 834750 9942136 ~ 9945714 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding downstream 889941 9877452 ~ 9890523 (-)
LOC122323520 NA non-coding downstream 1006001 9773311 ~ 9774463 (-)
G131910 NA non-coding downstream 1132440 9647549 ~ 9648024 (-)
LOC122323785 NA non-coding upstream 387413 11171026 ~ 11175620 (-)
G132231 NA non-coding upstream 701190 11484803 ~ 11487989 (-)
G132241 LOC107726138,LOC107664713,LOC107563276,LOC107555946,LOC107698981 non-coding upstream 725104 11508717 ~ 11565630 (-)
LOC122323791 NA non-coding upstream 729518 11513131 ~ 11515458 (-)
G132245 NA non-coding upstream 733572 11517185 ~ 11519279 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other downstream 35335 10740374 ~ 10745129 (-)
ctnnal1 NA other downstream 417937 10315621 ~ 10362527 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other downstream 468528 10291272 ~ 10311936 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other downstream 796159 9929866 ~ 9984305 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 1116005 9659356 ~ 9664459 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 386657 11170270 ~ 11170913 (-)
LOC122323871 ctnnal1,LOC107724361,LOC107670281,LOC107653856,LOC107710384 other upstream 926310 11709923 ~ 11756438 (-)
G132292 NA other upstream 1048560 11832173 ~ 11832907 (-)
bet1 bet1,LOC107669829,LOC107722155,LOC107731720 other upstream 1652166 12435779 ~ 12438085 (-)
sem1 NA other upstream 1814161 12597774 ~ 12669215 (-)

Expression


Co-expression Network