LOC122323520


Basic Information

Item Value
gene id LOC122323520
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9773311 ~ 9774463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247020.1
AACAGAGTGGTCTGAAGATATGCTGTGGAGAGAGTGCAACTGAGGAGAAACAGGCCAGCACAAGGTATGATTTCTCAGGGTCTGAGAGCAATTTCAGCATGGCCAGTGGATCCAGAAATACCGATCAGAAAAATGACCAGACGAGAGCAACAAAGATAAGTAATGgAACACATCTGGCTTCAACCCTGTGAGATTGGGGTTGCTGCAGGGGTCAAACTGTCCTGTAAGCAAAGCGCAAAGTGTGACCATGTTAAAGAGCTTCATCATAAACGCATTTGAAATTCCATGATAAAAGGGGCTGATAAATGGAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043627 response to estrogen biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0016900 oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor molecular_function
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG:

id description
ko03010 Ribosome
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247020.1 True 311 lncRNA 0.45 3 9773311 9774463

Neighbor

gene id symbol gene type direction distance location
trib1 trib1,LOC107565192,LOC107724318,LOC107702074,LOC107710180,LOC107556392,LOC107653840 coding downstream 134329 9631241 ~ 9638982 (-)
klhl38a klhl38a,LOC107724354,LOC107565193,LOC107702087,LOC107556389,LOC103030765,LOC108424967,LOC108272409,LOC105907674 coding downstream 188538 9579575 ~ 9584773 (-)
azin1b azin1b,LOC107724288,LOC107702092,LOC107565195,LOC107710131,LOC107653834 coding downstream 245324 9521341 ~ 9527987 (-)
rrm2b rrm2b,LOC107556385,LOC107702093,LOC107724293,LOC107565196,LOC108425040 coding downstream 252172 9516444 ~ 9521139 (-)
mtdha mtdh coding downstream 258293 9507489 ~ 9515018 (-)
lrrc69 LOC107724328,LOC107556328,LOC107653817,LOC107702067 coding upstream 134641 9909104 ~ 9911742 (-)
otud6b otud6b,LOC107556329,LOC107724319,LOC107702071,LOC107653818,LOC107556366 coding upstream 137902 9912365 ~ 9915059 (-)
rp9 rp9,LOC107556335,LOC107670274,LOC107724340,LOC107653847,LOC107710715,LOC107556368 coding upstream 232578 10007041 ~ 10011759 (-)
c19h18orf21 LOC107670294,LOC107724369,LOC107653848,LOC107710313,LOC107556336 coding upstream 237945 10012408 ~ 10025651 (-)
sla1a LOC107724327,LOC107556331,LOC107670275,LOC107653820,LOC107556370,LOC107710725 coding upstream 600248 10374711 ~ 10378838 (-)
G131910 NA non-coding downstream 125287 9647549 ~ 9648024 (-)
G131903 fam91a1,LOC107710596 non-coding downstream 128464 9603121 ~ 9644847 (-)
G131899 NA non-coding downstream 181455 9591326 ~ 9591856 (-)
G131896 NA non-coding downstream 201925 9569070 ~ 9571386 (-)
LOC122323628 NA non-coding downstream 217943 9553543 ~ 9555368 (-)
G131944 runx1t1,LOC107702085,LOC107556395 non-coding upstream 102989 9877452 ~ 9890523 (-)
LOC122323594 NA non-coding upstream 167673 9942136 ~ 9945714 (-)
G132128 NA non-coding upstream 424110 10198573 ~ 10255238 (-)
LOC122323417 NA non-coding upstream 1006001 10780464 ~ 10783613 (-)
LOC122323785 NA non-coding upstream 1396563 11171026 ~ 11175620 (-)
cibar1 fam92a1,LOC107710198,LOC107653841,LOC107556364,LOC107702073,LOC107724322 other downstream 108852 9659356 ~ 9664459 (-)
G131861 stk3,LOC107724280,LOC107653827,LOC107710087,LOC107702102,LOC107556381 other downstream 463959 9308720 ~ 9309352 (-)
hey1 hey1,LOC107584259,LOC107702120,LOC107555572,LOC107696214 other downstream 986582 8724506 ~ 8786729 (-)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC107702119,LOC107584261,LOC107724282,LOC107743828,LOC107696212,LOC107555569 other downstream 1034525 8727259 ~ 8738786 (-)
tdp2b tdp2,LOC107743833,LOC107696206,LOC107555562 other downstream 1113825 8654498 ~ 8659486 (-)
elmo1 elmo1,LOC107710279,LOC107556397,LOC107702083,LOC107724338,LOC107556334,LOC107653845 other upstream 155403 9929866 ~ 9984305 (-)
elp2 elp2,LOC107556343,LOC107670280,LOC107724330,LOC107653855,LOC107710621,LOC107556355 other upstream 516809 10291272 ~ 10311936 (-)
ctnnal1 NA other upstream 541158 10315621 ~ 10362527 (-)
trappc3 trappc3,LOC107653823,LOC107565048,LOC107564495 other upstream 965911 10740374 ~ 10745129 (-)
G132219 LOC105418166,LOC101068103,LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 1395807 11170270 ~ 11170913 (-)

Expression


Co-expression Network