selenol (sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854)


Basic Information

Item Value
gene id selenol
gene name sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5024806 ~ 5029567 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU201117
GAGTAACTCACTGGAAGCTCAGCATGGCTACCGAAGTGGGCCAAAACACGGTCACAGAGGCTTTGAAAGAACTGGTCGGATTCGGTAGAGCATCTTTGGAGAATGTAGAAAAGGACATCGCCAGAGGTGGTTCTTTGCGAGACATCGTGGAGACAAAAGTTCGTCCTTTATTTGGTCTGATGTCAGCAGGTGCCAAGTTCTTCAACAcCCTGGGAGTGAAAAACCAAAAGGAAGCAGAAtatttgtgggaacagtttttTCAGTTAAGTGTAGTCTTTGAAATCCTTTCATTGGGGCATTCAATCGTCAAAcattttgcataataataataataataataataataactttttgaTACCAGGCAATCCTCATGTTTTTAACAATCATTAATCAATAAAacgaatgcattttttatttggtaAGTAGCGATGTAATAAACAGTCacatatgtaaaaaatgtatagttagTTGGTaattataaaagaataataataatccacatTTTGCCCTGTACTTTATCCATAACATATTGAATACCAGTGTCATAATAGTACACTGATGATACTATTATTTGATTCTAATTTAACAGAAACACTGATGTTCGAGATAATGTTGAAGGCTTACTACAACTGGAAgtggaGTGGGATTGTTTTTTGAAGCGTCTGGACGTTCAGATGAAAATGAGCGACACGGTTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCAGATACGCAGCTTATACACGTCCAGACTAAAGAGAACGTGTCTCTGGGTCAGTACTTTGGGAAGGGAGAGAATCTCCTCCTTGTGTTGCTCCGCCATTTTGGATGACAGCCATGACGAGACCACCTGACTGAGCTGAAGAACAGCCAGAAGCTTCAGGGAGCGCAGTCCTTGCGGGTGCTGGTGGTCTCGTACGGCTCTCTTGAAGGGGCCGCGTTCTGGCTCGATCAGACAGGCTATGAGTTTGACATGCTGTTGGATGCAGAGAGAGCGGTGTATCGAGCGTTTGGTCTGGGCTCATCGATCAGCAAGGTGATGAAGTTTAAGTTAATGCTGCACTACTCTGAAATACTGACGATGAACCAACGGCTCCCCGATGTGCCACCTCAGTTCATCGATGACCTCTTTCAGGTTGGCTCCTCAGATAGACAGCTCCCCCAGAGGTTGTATGAATGAAGATCTGACTCAAAGTCATACGCTTATGAAGAGTCATTTCTGATGGGCATTTACACCCTCTGGTCATCACAGCTTCACATCTGTTGAGTTACACCAGCCCAGACCCGTCTATATCGCACATCAGTGTCTCGATTAAATGAAGTGAGATTATTAACTTAATTGTTTGCAGATACATTTTGCAATTATTCAAGACACACGAAATGTGTGTCAAGCCGTTTAACCATTGTTTACTGTGAATGATTATTGAAATCAACACCGAATAAAGAGCTGGATGTTGGTCAGAA
>TU201118
GAGTAACTCACTGGAAGCTCAGCATGGCTACCGAAGTGGGCCAAAACACGGTCACAGAGGCTTTGAAAGAACTGGTCGGATTCGGTAGAGCATCTTTGGAGAATGTAGAAAAGGACATCGCCAGAGGTGGTTCTTTGCGAGACATCGTGGAGACAAAAGTTCGTCCTTTATTTGGTCTGATGTCAGCAGGTGCCAAGTTCTTCAACAcCCTGGGAGTGAAAAACCAAAAGGAAGCAGAAtatttgtgggaacagtttttTCAGTTAAGTGTAGTCTTTGAAATCCTTTCATTGGGGCATTCAATCGTCAAAcattttgcataataataataataataataataataactttttgaTACCAGGCAATCCTCATGTTTTTAACAATCATTAATCAATAAAacgaatgcattttttatttggtaAGTAGCGATGTAATAAACAGTCacatatgtaaaaaatgtatagttagTTGGTaattataaaagaataataataatccacatTTTGCCCTGTACTTTATCCATAACATATTGAATACCAGTGTCATAATAGTACACTGATGATACTATTATTTGATTCTAATTTAACAGAAACACTGATGTTCGAGATAATGTTGAAGGCTTACTACAACTGGAAgtggaGTGGGATTGTTTTTTGAAGCGTCTGGACGTTCAGATGAAAATGAGCGACACGGTTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCAGATACGCAGCTTATACACGTCCAGACTAAAGAGAACGTGTCTCTGGGTCAGTACTTTGGGAAGGGAGAGAATCTCCTCCTTGTGTTGCTCCGCCATTTTGGATGACAGCCATGACGAGACCACCTGACTGAGCTGAAGAACAGCCAGAAGCTTCAGGGAGCGCAGTCCTTGCGGGTGCTGGTGGTCTCGTACGGCTCTCTTGAAGGGGCCGCGTTCTGGCTCGATCAGACAGGCTATGAGTTTGACATGCTGTTGGATGCAGAGAGAGCGGTGTATCGAGCGTTTGGTCTGGGCTCATCGATCAGCAAGGTGATGAAGTTTAAGTTAATGCTGCACTACTCTGAAATACTGACGATGAACCAACGGCTCCCCGATGTGCCACCTCAGTTCATCGATGACCTCTTTCAGATGGGTGGTGATTTTGTGCTGGACTCGGGTGGTAAAGTGATATTTTCCTACCGGTGTAAAAGCCCTGTGGACAGACCATCAGTTACTCAGATTCTGGCTGCCATCTCTGCTCATTCGTAGCATTCCTGGAGAATAAAGGTTGGCTCCTCAGATAGACAGCTCCCCCAGAGGTTGTATGAATGAAGATCTGACTCAAAGTCATACGCTTATGAAGAGTCATTTCTGATGGGCATTTACACCCTCTGGTCATCACAGCTTCACATCTGTTGAGTTACACCAGCCCAGACCCGTCTATATCGCACATCAGTGTCTCGATTAAATGAAGTGAGATTATTAACTTAATTGTTTGCAGATACATTTTGCAATTATTCAAGACACACGAAATGTGTGTCAAGCCGTTTAACCATTGTTTACTGTGAATGATTATTGAAATCAACACCGAATAAAGAGCTGGATGTTGGTCAGAA
>TU201119
GAGTAACTCACTGGAAGCTCAGCATGGCTACCGAAGTGGGCCAAAACACGGTCACAGAGGCTTTGAAAGAACTGGTCGGATTCGGTAGAGCATCTTTGGAGAATGTAGAAAAGGACATCGCCAGAGGTGGTTCTTTGCGAGACATCGTGGAGACAAAAGTTCGTCCTTTATTTGGTCTGATGTCAGCAGGTGCCAAGTTCTTCAACAcCCTGGGAGTGAAAAACCAAAAGGAAGCAGAAtatttgtgggaacagtttttTCAGTTAAGTGTAGTCTTTGAAATCCTTTCATTGGGGCATTCAATCGTCAAAcattttgcataataataataataataataataataactttttgaTACCAGGCAATCCTCATGTTTTTAACAATCATTAATCAATAAAacgaatgcattttttatttggtaAGTAGCGATGTAATAAACAGTCacatatgtaaaaaatgtatagttagTTGGTaattataaaagaataataataatccacatTTTGCCCTGTACTTTATCCATAACATATTGAATACCAGTGTCATAATAGTACACTGATGATACTATTATTTGATTCTAATTTAACAGAAACACTGATGTTCGAGATAATGTTGAAGGCTTACTACAACTGGAAgtggaGTGGGATTGTTTTTTGAAGCGTCTGGACGTTCAGATGAAAATGAGCGACACGGTTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCAGATACGCAGCTTATACACGTCCAGACTAAAGAGAACGTGTCTCTGGGTCAGTACTTTGGGAAGGGAGAGAATCTCCTCCTTGTGTTGCTCCGCCATTTTGGATGACAGCCATGACGAGACCACCTGACTGAGCTGAAGAACAGCCAGAAGCTTCAGGGAGCGCAGTCCTTGCGGGTGCTGGTGGTCTCGTACGGCTCTCTTGAAGGGGCCGCGTTCTGGCTCGATCAGACAGGCTATGAGTTTGACATGCTGTTGGATGCAGAGAGAGCGGTGTATCGAGCGTTTGGTCTGGGCTCATCGATCAGCAAGGTGATGAAGTTTAAGTTAATGCTGCACTACTCTGAAATACTGACGATGAACCAACGGCTCCCCGATGTGCCACCTCAGTTCATCGATGACCTCTTTCAGATGGGTGGTGATTTTGTGCTGGACTCGGGTGGTAAAGTGATATTTTCCTACCGGTGTAAAAGCCCTGTGGACAGACCATCAGTTACTCAGATTCTGGCTGCCATCTCTGCTCATTCGTAGCATTCCTGGAGAATAAAGGTCTTTTATGTTTCgtctttctaatatgctaaaCCGCTTGACTTGCTTCCTTGCCTTCCTGATAAGAAGTTCCAGTTCCTGAAAAAGTTACACTCGTTCGTTTGTGCCAGAATTTATTCTTCCATTAAGAACGACGGCCAAAATAAAGTTTGCAAGATTGGCTGTTCCCATGCCCTCTGTTTAGGGTGGAAGAGGTCTGTTCTTTTCTAAAGCAGACTTTGGCCTTAATGGGGGAATTTACttatctgtaaatataaaaatgggaAGCTGCTGTATTAATGTCATACTAAAGGGAGCATGGAACAAATATCATATCAGGGTGTAAATGGTATGGTAAACAGTATTTGTAAAGACACTGTGACTGACTTTAGGCCTTTGATGTGTTGGTATAGGTTGGCTCCTCAGATAGACAGCTCCCCCAGAGGTTGTATGAATGAAGATCTGACTCAAAGTCATACGCTTATGAAGAGTCATTTCTGATGGGCATTTACACCCTCTGGTCATCACAGCTTCACATCTGTTGAGTTACACCAGCCCAGACCCGTCTATATCGCACATCAGTGTCTCGATTAAATGAAGTGAGATTATTAACTTAATTGTTTGCAGATACATTTTGCAATTATTCAAGACACACGAAATGTGTGTCAAGCCGTTTAACCATTGTTTACTGTGAATGATTATTGAAATCAACACCGAATAAAGAGCTGGATGTTGGTCAGAA
>XM_043219176.1
TGACTTGCTTGATGACAGCTGATCAGCGCAGTTACGAGTAACTCACTGGAAGCTCAGCATGGCTACCGAAGTGGGCCAAAACACGGTCACAGAGGCTTTGAAAGAACTGGTCGGATTCGGTAGAGCATCTTTGGAGAATGTAGAAAAGGACATCGCCAGAGGTGGTTCTTTGCGAGACATCGTGGAGACAAAAGTTCGTCCTTTATTTGGTCTGATGTCAGCAGGTGCCAAGTTCTTCAACAcCCTGGGAGTGAAAAACCAAAAGGAAGCAGAAtatttgtgggaacagtttttTCAAAACACTGATGTTCGAGATAATGTTGAAGGCTTACTACAACTGGAAgtggaGTGGGATTGTTTTTTGAAGCGTCTGGACGTTCAGATGAAAATGAGCGACACGGTTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCAGATACGCAGCTTATACACGTCCAGACTAAAGAGAACGTGTCTCTGGGTCAGTACTTTGGGAAGGGAGAGAATCTCCTCCTTGTGTTGCTCCGCCATTTTGGATGACAGCCATGACGAGACCACCTGACTGAGCTGAAGAACAGCCAGAAGCTTCAGGGAGCGCAGTCCTTGCGGGTGCTGGTGGTCTCGTACGGCTCTCTTGAAGGGGCCGCGTTCTGGCTCGATCAGACAGGCTATGAGTTTGACATGCTGTTGGATGCAGAGAGAGCGGTGTATCGAGCGTTTGGTCTGGGCTCATCGATCAGCAAGGTGATGAAGTTTAAGTTAATGCTGCACTACTCTGAAATACTGACGATGAACCAACGGCTCCCCGATGTGCCACCTCAGTTCATCGATGACCTCTTTCAGATGGGTGGTGATTTTGTGCTGGACTCGGGTGGTAAAGTGATATTTTCCTACCGGTGTAAAAGCCCTGTGGACAGACCATCAGTTACTCAGATTCTGGCTGCCATCTCTGCTCATTCGTAGCATTCCTGGAGAATAAAGGTTGGCTCCTCAGATAGACAGCTCCCCCAGAGGTTGTATGAATGAAGATCTGACTCAAAGTCATACGCTTATGAAGAGTCATTTCTGATGGGCATTTACACCCTCTGGTCATCACAGCTTCACATCTGTTGAGTTACACCAGCCCAGACCCGTCTATATCGCACATCAGTGTCTCGATTAAATGAAGTGAGATTATTAACTTAATTGTTTGCAGATACATTTTGCAATTATTCAAGACACACGAAATGTGTGTCAAGCCGTTTAACCATTGTTTACTGTGAATGATTATTGAAATCAACACCGAATAAAGAGCTGGATGTTGGTCAGAA
>XM_043219177.1
TGACTTGCTTGATGACAGCTGATCAGCGCAGTTACGAGTAACTCACTGGAAGCTCAGCATGGCTACCGAAGTGGGCCAAAACACGGTCACAGAGGCTTTGAAAGAACTGGTCGGATTCGGTAGAGCATCTTTGGAGAATGTAGAAAAGGACATCGCCAGAGGTGGTTCTTTGCGAGACATCGTGGAGACAAAAGTTCGTCCTTTATTTGGTCTGATGTCAGCAGGTGCCAAGTTCTTCAACAcCCTGGGAGTGAAAAACCAAAAGGAAGCAGAAtatttgtgggaacagtttttTCAAAACACTGATGTTCGAGATAATGTTGAAGGCTTACTACAACTGGAAgtggaGTGGGATTGTTTTTTGAAGCGTCTGGACGTTCAGATGAAAATGAGCGACACGGTTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCAGATACGCAGCTTATACACGTCCAGACTAAAGAGAACGTGTCTCTGGGTCAGTACTTTGGGAAGGGAGAGAATCTCCTCCTTGTGTTGCTCCGCCATTTTGGATGACAGCCATGACGAGACCACCTGACTGAGCTGAAGAACAGCCAGAAGCTTCAGGGAGCGCAGTCCTTGCGGGTGCTGGTGGTCTCGTACGGCTCTCTTGAAGGGGCCGCGTTCTGGCTCGATCAGACAGGCTATGAGTTTGACATGCTGTTGGATGCAGAGAGAGCGGTGTATCGAGCGTTTGGTCTGGGCTCATCGATCAGCAAGGTGATGAAGTTTAAGTTAATGCTGCACTACTCTGAAATACTGACGATGAACCAACGGCTCCCCGATGTGCCACCTCAGTTCATCGATGACCTCTTTCAGGTTGGCTCCTCAGATAGACAGCTCCCCCAGAGGTTGTATGAATGAAGATCTGACTCAAAGTCATACGCTTATGAAGAGTCATTTCTGATGGGCATTTACACCCTCTGGTCATCACAGCTTCACATCTGTTGAGTTACACCAGCCCAGACCCGTCTATATCGCACATCAGTGTCTCGATTAAATGAAGTGAGATTATTAACTTAATTGTTTGCAGATACATTTTGCAATTATTCAAGACACACGAAATGTGTGTCAAGCCGTTTAACCATTGTTTACTGTGAATGATTATTGAAATCAACACCGAATAAAGAGCTGGATGTTGGTCAGAA

Function

symbol description
sell Enables calcium ion binding activity; oligosaccharide binding activity; and protease binding activity. Involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules and leukocyte tethering or rolling. Is integral component of plasma membrane. Implicated in Crohn's disease; IgA glomerulonephritis; and ulcerative colitis. Biomarker of Alzheimer's disease; IgA glomerulonephritis; and systemic lupus erythematosus.

NR:

description
selenoprotein L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201117 False 1468 TUCP 0.42 8 5024806 5029532
TU201118 False 1606 TUCP 0.43 9 5024806 5029532
TU201119 True 1998 TUCP 0.42 8 5024806 5029532
XM_043219176.1 False 1314 mRNA 0.47 10 5024806 5029567
XM_043219177.1 False 1176 mRNA 0.47 9 5024806 5029567

Neighbor

gene id symbol gene type direction distance location
LOC122324828 cnksr3,ipcef1,LOC107560196,LOC107742203,LOC107679663,LOC107678675 coding downstream 14247 4973048 ~ 5010559 (-)
LOC122324969 tiam2,LOC107560208,LOC107678678,LOC107742216 coding downstream 58025 4928862 ~ 4966781 (-)
LOC122324970 cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202 coding downstream 96646 4917807 ~ 4928160 (-)
bcl11bb LOC107742200,LOC107678676,LOC107679682,LOC107560207,LOC107555305 coding downstream 143179 4849379 ~ 4881627 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding downstream 319498 4695514 ~ 4705308 (-)
ttc13 ttc13,LOC107679664,LOC106571397 coding upstream 4782 5034349 ~ 5052435 (-)
fam89a fam89a,LOC107727345,LOC107742210,LOC107685750,LOC107679680 coding upstream 31140 5060707 ~ 5064427 (-)
sprtn sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995 coding upstream 37048 5066615 ~ 5072155 (-)
c20h1orf131 LOC107727347,LOC107685755 coding upstream 86281 5115848 ~ 5121484 (-)
ints7 ints7,LOC107685756,LOC107659878 coding upstream 346386 5375953 ~ 5385180 (-)
G136175 NA non-coding downstream 5940 5018361 ~ 5018866 (-)
G136069 NA non-coding downstream 288000 4736549 ~ 4736806 (-)
G136012 NA non-coding downstream 578603 4445773 ~ 4446203 (-)
trnat-ugu_51 NA non-coding downstream 726251 4298483 ~ 4298555 (-)
G135980 NA non-coding downstream 753117 4271296 ~ 4271689 (-)
G136176 NA non-coding upstream 4032 5033599 ~ 5033804 (-)
G136180 NA non-coding upstream 61733 5091300 ~ 5097061 (-)
G136188 NA non-coding upstream 82606 5112173 ~ 5119766 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 622732 5652299 ~ 5652925 (-)
G136356 NA non-coding upstream 671614 5701181 ~ 5701475 (-)
si:ch73-111k22.3 LOC107742221 other downstream 12226 5011381 ~ 5012580 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 442709 4564356 ~ 4582097 (-)
LOC122325550 NA other downstream 1049548 3968763 ~ 3975258 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other downstream 1154740 3638289 ~ 3870066 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 2267376 2740552 ~ 2757430 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other upstream 131639 5161206 ~ 5360069 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 561771 5591338 ~ 5598666 (-)
G136357 NA other upstream 672112 5701679 ~ 5703911 (-)
zpax2 NA other upstream 894499 5924066 ~ 5931122 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other upstream 1245187 6274754 ~ 6302976 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_06948569_06952962 NA coding CI01000051 null 6948569 ~ 6954096 (+)